NO07G03860, NO07G03860 (gene) Nannochloropsis oceanica

Overview
NameNO07G03860
Unique NameNO07G03860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2309
Alignment locationchr7:1078836..1081144 -

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial pyruvate carrier
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1078836..1081144 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006850mitochondrial pyruvate transmembrane transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR005336MPC
Homology
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_009836393.1 (hypothetical protein H257_11213 [Aphanomyces astaci] >ETV74287.1 hypothetical protein H257_11213 [Aphanomyces astaci])

HSP 1 Score: 153.3 bits (386), Expect = 4.100e-34
Identity = 69/99 (69.70%), Postives = 77/99 (77.78%), Query Frame = 0 
Query:    2 SARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA 101
            + R   F+N PTGPKTTHFWGPVANWGFV AAI D  KPPE IS  MT  ++VYSM+FMRFAWMVQPRNYLLLACHASNE AQLYQL R + +  +  A
Sbjct:    4 AGRFKAFVNHPTGPKTTHFWGPVANWGFVAAAIADMNKPPENISINMTSAMAVYSMIFMRFAWMVQPRNYLLLACHASNEAAQLYQLKRALVHKWTSPA 102
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: CCI41107.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 152.9 bits (385), Expect = 5.300e-34
Identity = 67/92 (72.83%), Postives = 78/92 (84.78%), Query Frame = 0 
Query:    3 ARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKY 95
            A   +F+N PTGP+TTHFWGPVANWGFVLAAI+D +KPPE IS  MT  +SVYS++FMRFAWMVQPRNYLLLACH SNE AQLYQL R +++
Sbjct:    4 AHFRRFLNHPTGPRTTHFWGPVANWGFVLAAIMDMKKPPEMISVNMTMAMSVYSILFMRFAWMVQPRNYLLLACHGSNETAQLYQLQRALRH 95
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_019150810.1 (PREDICTED: mitochondrial pyruvate carrier 1-like [Ipomoea nil] >XP_019150811.1 PREDICTED: mitochondrial pyruvate carrier 1-like [Ipomoea nil] >XP_019150812.1 PREDICTED: mitochondrial pyruvate carrier 1-like [Ipomoea nil])

HSP 1 Score: 152.9 bits (385), Expect = 5.300e-34
Identity = 67/91 (73.63%), Postives = 75/91 (82.42%), Query Frame = 0 
Query:    3 ARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIK 94
            A    F+NSP GPKTTHFWGPVANWGFV+A ++D++KPPE IS  MT  + VYS +FMRFAWMVQPRNYLLLACHASNEC QLYQLSR  K
Sbjct:    2 ASFRAFLNSPVGPKTTHFWGPVANWGFVVAGLVDTQKPPEMISGNMTSAMCVYSALFMRFAWMVQPRNYLLLACHASNECVQLYQLSRWAK 92
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_002947825.1 (hypothetical protein VOLCADRAFT_79838 [Volvox carteri f. nagariensis] >EFJ51358.1 hypothetical protein VOLCADRAFT_79838 [Volvox carteri f. nagariensis])

HSP 1 Score: 152.5 bits (384), Expect = 6.900e-34
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 0 
Query:    2 SARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSR 91
            SARL+ F NSPTGPKTTHFWGPVANWGFVLA + D RK PE IS  MTGV+ +YS++FMRFAW V+PRNYLLLACHASNE  QLYQLSR
Sbjct:    5 SARLLNFWNSPTGPKTTHFWGPVANWGFVLAGLADMRKDPEYISPNMTGVMCIYSLLFMRFAWEVKPRNYLLLACHASNETVQLYQLSR 93
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_008879186.1 (hypothetical protein H310_13455 [Aphanomyces invadans] >ETV92222.1 hypothetical protein H310_13455 [Aphanomyces invadans])

HSP 1 Score: 152.1 bits (383), Expect = 9.100e-34
Identity = 69/99 (69.70%), Postives = 77/99 (77.78%), Query Frame = 0 
Query:    2 SARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA 101
            + R   FIN PTGPKTTHFWGPVANWGFV AAI D  KPPE IS  MT  ++VYS++FMRFAWMVQPRNYLLLACHASNE AQLYQL R + +  +  A
Sbjct:    4 AGRFKAFINHPTGPKTTHFWGPVANWGFVAAAIADMNKPPEKISINMTSAMAVYSLIFMRFAWMVQPRNYLLLACHASNETAQLYQLQRALAHKWTSPA 102
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_002462297.1 (mitochondrial pyruvate carrier 1 [Sorghum bicolor] >XP_021308236.1 mitochondrial pyruvate carrier 1 [Sorghum bicolor] >EER98818.1 hypothetical protein SORBI_3002G186500 [Sorghum bicolor])

HSP 1 Score: 151.4 bits (381), Expect = 1.500e-33
Identity = 68/90 (75.56%), Postives = 73/90 (81.11%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSR 91
            MS  L  FINSP GPKTTHFWGPVANWGFV+A ++D  KPPE IS  MT  + VYS +FMRFAWMVQPRNYLLLACHASNE  QLYQLSR
Sbjct:    1 MSTALKAFINSPVGPKTTHFWGPVANWGFVIAGLVDMNKPPEMISGNMTAAMCVYSGLFMRFAWMVQPRNYLLLACHASNESVQLYQLSR 90
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_011044191.1 (PREDICTED: mitochondrial pyruvate carrier 1-like [Populus euphratica])

HSP 1 Score: 151.4 bits (381), Expect = 1.500e-33
Identity = 66/90 (73.33%), Postives = 75/90 (83.33%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSR 91
            M+A    F+NSP GPKT+HFWGPVANWGFV+A ++D +KPPE IS  MTG + VYS +FMRFAWMVQPRNYLLLACHASNE  QLYQLSR
Sbjct:    1 MAATFRAFLNSPVGPKTSHFWGPVANWGFVVAGLVDMKKPPEMISGNMTGAMCVYSALFMRFAWMVQPRNYLLLACHASNETVQLYQLSR 90
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: OEL28092.1 (Mitochondrial pyruvate carrier 1, partial [Dichanthelium oligosanthes])

HSP 1 Score: 151.4 bits (381), Expect = 1.500e-33
Identity = 68/90 (75.56%), Postives = 73/90 (81.11%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSR 91
            MS  L  F+NSP GPKTTHFWGPVANWGFVLA ++D  KPPE IS  MT  + VYS +FMRFAWMVQPRNYLLLACHASNE  QLYQLSR
Sbjct:   11 MSTALKAFLNSPVGPKTTHFWGPVANWGFVLAGLVDMNKPPEMISGNMTAAMCVYSGLFMRFAWMVQPRNYLLLACHASNESVQLYQLSR 100
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_019160408.1 (PREDICTED: mitochondrial pyruvate carrier 1-like [Ipomoea nil] >XP_019160409.1 PREDICTED: mitochondrial pyruvate carrier 1-like [Ipomoea nil])

HSP 1 Score: 151.4 bits (381), Expect = 1.500e-33
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 0 
Query:    3 ARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIK 94
            A    F+NSP GPKTTHFWGPVANWGFV+A ++D++KPPE IS  MT  + VYS +FMRFAWMVQPRNYLLL CHASNEC QLYQLSR  K
Sbjct:    2 ASFRAFLNSPVGPKTTHFWGPVANWGFVVAGLVDTQKPPEMISGNMTSAMCVYSALFMRFAWMVQPRNYLLLGCHASNECVQLYQLSRWAK 92
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_004956693.1 (mitochondrial pyruvate carrier 1 [Setaria italica] >XP_004956694.1 mitochondrial pyruvate carrier 1 [Setaria italica] >KQL24295.1 hypothetical protein SETIT_031588mg [Setaria italica])

HSP 1 Score: 151.0 bits (380), Expect = 2.000e-33
Identity = 67/90 (74.44%), Postives = 73/90 (81.11%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSR 91
            MS  L  F+NSP GPKTTHFWGPVANWGFVLA ++D  KPPE +S  MT  + VYS +FMRFAWMVQPRNYLLLACHASNE  QLYQLSR
Sbjct:    1 MSTALKAFLNSPVGPKTTHFWGPVANWGFVLAGLVDMNKPPEMVSGNMTAAMCVYSGLFMRFAWMVQPRNYLLLACHASNESVQLYQLSR 90
The following BLAST results are available for this feature:
BLAST of NO07G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009836393.14.100e-3469.70hypothetical protein H257_11213 [Aphanomyces astac... [more]
CCI41107.15.300e-3472.83unnamed protein product [Albugo candida][more]
XP_019150810.15.300e-3473.63PREDICTED: mitochondrial pyruvate carrier 1-like [... [more]
XP_002947825.16.900e-3477.53hypothetical protein VOLCADRAFT_79838 [Volvox cart... [more]
XP_008879186.19.100e-3469.70hypothetical protein H310_13455 [Aphanomyces invad... [more]
XP_002462297.11.500e-3375.56mitochondrial pyruvate carrier 1 [Sorghum bicolor]... [more]
XP_011044191.11.500e-3373.33PREDICTED: mitochondrial pyruvate carrier 1-like [... [more]
OEL28092.11.500e-3375.56Mitochondrial pyruvate carrier 1, partial [Dichant... [more]
XP_019160408.11.500e-3372.53PREDICTED: mitochondrial pyruvate carrier 1-like [... [more]
XP_004956693.12.000e-3374.44mitochondrial pyruvate carrier 1 [Setaria italica]... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000462NSK000462Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03860.1NO07G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581321gene_2730Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100127g18gene3568Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03860.1NO07G03860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03860 ID=NO07G03860|Name=NO07G03860|organism=Nannochloropsis oceanica|type=gene|length=2309bp
ACGTTGTTATTTACTTCGGTCTTTGATTTCTACATACACAAGCTTGCTTG
CTCGTGTCTCGCAGTACCGTCCTTTCAACGGACTGCTCACCATCCCTCCC
TCCCTCCCTCCCTCTCGCTTTCTCTCCCTCTCTCCCTCCCTCTTCGCCTC
CCCTACTCCCCATCGCTTTCAGACAGACCCAATCCTTCATCCACCTCAAA
CTCCGTCCCTGCATCATCTTCTCCCTCCACCGTGGCCTCCTCCATCTCCT
CCATCTCCTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCTTCC
TCCTCCTCCTCCTCCTCCTCCCGCCTGGTCACCACCCCTATGGGCGTGGG
AGCAACAATGGTCTGAATTTCAACCAGCTTATCCTCCAGCTGTCGTTCCA
TGTGCGCAAGCATTTCCAGCTCTCCGTGCTCCAACCTCGGGAACCAGGCT
TCATATCGACGGGGGAGGGAAACGAGGGAAGGGAGGGGAAAGAGATGAAT
GCTGGACCGCGTTATTTTCCGCCTACAAACTCGGTGACATGAGGCAAACT
TACGCACGACGAGACTTTGAGGGGCGAGTTAGAGGGATCTACCACGCTAT
AACACTTACCCTCCTCGGTGTCGCGGGGCTCCAAAAGTGGAAAGGGAAAG
GGGATGGCGTTCATGGCTTGTGCTTAGCGTCCGAGTGTCCTCGCGGGTCA
AAATTCTCCTCCCCCTCCTTCTCTTTTTTTGGGGTAAGCGGAGGTGGTCT
GCGCGGTTTGCACGGTAGGGATTGTGTGTTGAGAGTGAAGCGCGGTACTG
TGGACTTGGCGATGATGGGAGCGAGCTGAAGGCTTGTGCCGAGCGAGGGT
GGAAAGGCCAGCCTCTACCCAGACACACTTCCCATCCCCCCTCCACCATC
TCTACGAGCAGGCACAATAACAGTGCTGTCTCTGTGTTTTGCCAATATAG
CAGTGGTAAGGGTGTCACCCCAGCCAAAATGAGAGCAAGAGAGAGAGGTG
AAGAAAGAAGCATGTCGGTCATAATCACAGGCCTCATAGCCCCTCATCTC
CCCACCACATCCAAACCCTCGCATGACCTACCCAAGACCACCACCCTATA
TCCTGCGTTCCGCAAGCACAGGCCGCTTTTTAATCCACCAGCCGGCTGCC
TGCTCCATCCCTTGCTCGTCGTTGCTGATTGCTTGCTCCTCTCCCTCCTA
GCTACACACGTCTAATTCATGTCGGCGCGACTTATGCAGTTTATCAACAG
CCCCACAGGCCCCAAGACAACTCATTTCTGGGGGCCTGTGGCCAATTGGG
GGTTTGTGTTGGCGgtatgtgatggcagcgggtgggaggagagggaggga
aggaaggcggggaaagtggaggagggagggtggtaggaagaggaggtagg
gcgtctattcatgcgctgtccacactaatacagGCAATCATCGACTCGCG
GAAGCCACCGGAGACTATTTCTGCCAAGATGACGGGTGgtacgtacctcc
gcaagctgggccgtgttgatttttctccctctttttggggagtattaatt
ttgttcttttttttgggtgggtgtgggggggcagaatccgttccttcact
tccatcaacctcgctcgctcgctctttcctctccctctctgtcattcctc
tttgtgcatggactgtttggagcgtatgcgttgtttatcgagctagcctc
ccgctgttaacgacccttgtggcaatcctgccttcagccccctctaacga
tctcattcactccttcctccctcctctttttcctccctcagTCCTCTCCG
TTTATAGCATGATGTTTATGCGTTTTGCCTGGATGGTACAGCCACGAAAC
TACCTCTTGTTGGCGTGCCATGCCTCCAATGAATGCGCGCAGCTTTATCA
GCTGTCGCGGAGAATCAAATATGAgtaagtggggaagggtggaggatcgg
agaaagggaggcaaggagaaaggtcgggagaaagggcgactttgaagatg
aagacgtgacttgtgttattacgctcctatactcgcaaccgacctcaagc
attccttgacccacacacacacacaccccacacagCCTGAGTCAGGAGGC
AAAGTGATAATTGGACGACGAATCATCTCACAGCACCGGCTACGATTGCT
CTAGATACGGATTTCTTAGTATGGGGGGAGGGAGAAAGGTTAGGGTGTGA
CGAGGTGCACAAGAGACGAGCGGAGAAAGTAGACTGGAGGAAAGAAAAAA
GTTGAAGGGTGAGGGGGAAAAAAAACGACGGCACTCGGTAGTATGTCGTT
TTAAACGCC
back to top

protein sequence of NO07G03860.1

>NO07G03860.1-protein ID=NO07G03860.1-protein|Name=NO07G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTG
VLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA
K*
back to top
Synonyms
Publications