NO07G03860, NO07G03860 (gene) Nannochloropsis oceanica

Overview
NameNO07G03860
Unique NameNO07G03860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2309
Alignment locationchr7:1078836..1081144 -

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Properties
Property NameValue
DescriptionMitochondrial pyruvate carrier
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1078836..1081144 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006850mitochondrial pyruvate transmembrane transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005743mitochondrial inner membrane
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR005336MPC
Homology
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: EWM26988.1 (brain protein 44-like protein [Nannochloropsis gaditana])

HSP 1 Score: 195.7 bits (496), Expect = 7.100e-47
Identity = 91/101 (90.10%), Postives = 97/101 (96.04%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEAK 102
            MSARL+QFINSPTGPKTTHFWGPVANWGFVLAA+IDSRKPPETISAKMTGVLSVYS++FMRFAWMVQPRNYLLLACHASNE AQLYQLSRRI YD+ Q+ K
Sbjct:    1 MSARLVQFINSPTGPKTTHFWGPVANWGFVLAAMIDSRKPPETISAKMTGVLSVYSLLFMRFAWMVQPRNYLLLACHASNEVAQLYQLSRRISYDMEQKGK 101
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_002904178.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY54356.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 161.0 bits (406), Expect = 2.000e-36
Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA 101
            M++RL  FINSPTGPKTTHFWGPVANWGFVLAA+ D +KP + IS  MT  LS+YS++FMRFAWMV+PRNYLLLACHASNE AQLYQL R ++Y  S++A
Sbjct:    3 MASRLRYFINSPTGPKTTHFWGPVANWGFVLAAMADMQKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNETAQLYQLQRGVRYQASKKA 102
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_008900827.1 (hypothetical protein PPTG_08478 [Phytophthora parasitica INRA-310] >ETI53426.1 hypothetical protein F443_03622 [Phytophthora parasitica P1569] >ETK93267.1 hypothetical protein L915_03516 [Phytophthora parasitica] >ETL46674.1 hypothetical protein L916_03467 [Phytophthora parasitica] >ETL99819.1 hypothetical protein L917_03387 [Phytophthora parasitica] >ETM52977.1 hypothetical protein L914_03491 [Phytophthora parasitica] >ETN13752.1 hypothetical protein PPTG_08478 [Phytophthora parasitica INRA-310] >ETO82151.1 hypothetical protein F444_03691 [Phytophthora parasitica P1976] >ETP23214.1 hypothetical protein F441_03617 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 160.6 bits (405), Expect = 2.500e-36
Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA 101
            M++RL  FINSPTGPKTTHFWGPVANWGFV+AA+ D RKP + IS  MT  LS+YS++FMRFAWMV+PRNYLLLACHASNE AQLYQL R I++  S++A
Sbjct:   45 MASRLRYFINSPTGPKTTHFWGPVANWGFVVAAMADMRKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNEAAQLYQLQRGIRFQASKKA 144
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: ETP51226.1 (hypothetical protein F442_03602 [Phytophthora parasitica P10297])

HSP 1 Score: 160.6 bits (405), Expect = 2.500e-36
Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA 101
            M++RL  FINSPTGPKTTHFWGPVANWGFV+AA+ D RKP + IS  MT  LS+YS++FMRFAWMV+PRNYLLLACHASNE AQLYQL R I++  S++A
Sbjct:   45 MASRLRYFINSPTGPKTTHFWGPVANWGFVVAAMADMRKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNEAAQLYQLQRGIRFQASKKA 144
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: KUF93431.1 (Mitochondrial pyruvate carrier 1 [Phytophthora nicotianae] >KUF98302.1 hypothetical protein AM588_10009697 [Phytophthora nicotianae])

HSP 1 Score: 160.6 bits (405), Expect = 2.500e-36
Identity = 72/100 (72.00%), Postives = 85/100 (85.00%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA 101
            M++RL  FINSPTGPKTTHFWGPVANWGFV+AA+ D RKP + IS  MT  LS+YS++FMRFAWMV+PRNYLLLACHASNE AQLYQL R I++  S++A
Sbjct:    3 MASRLRYFINSPTGPKTTHFWGPVANWGFVVAAMADMRKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNEAAQLYQLQRGIRFQASKKA 102
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_009537035.1 (hypothetical protein PHYSODRAFT_288894 [Phytophthora sojae] >EGZ07469.1 hypothetical protein PHYSODRAFT_288894 [Phytophthora sojae])

HSP 1 Score: 159.5 bits (402), Expect = 5.700e-36
Identity = 71/100 (71.00%), Postives = 85/100 (85.00%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA 101
            M++RL  FINSPTGPKTTHFWGPVANWGFVLAA+ D +KP + IS  MT  LS+YS++FMRFAWMV+PRNYLLLACHASNE AQLYQL R ++Y  S+++
Sbjct:    3 MASRLRYFINSPTGPKTTHFWGPVANWGFVLAAMADMQKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNETAQLYQLQRGLRYQASKKS 102
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: POM68331.1 (UPF0041 domain containing hypothetical protein [Phytophthora palmivora var. palmivora] >POM71292.1 UPF0041 domain containing hypothetical protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 159.5 bits (402), Expect = 5.700e-36
Identity = 71/100 (71.00%), Postives = 85/100 (85.00%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA 101
            M++RL  FINSPTGPKTTHFWGPVANWGFVLAA+ D RKP + IS  MT  LS+YS++FMRFAWMV+PRNYLLLACHASNE AQLYQL R +++  +++A
Sbjct:    3 MASRLRYFINSPTGPKTTHFWGPVANWGFVLAAMADMRKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNETAQLYQLQRGLRFQANKKA 102
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: OWZ22014.1 (hypothetical protein PHMEG_0003330 [Phytophthora megakarya])

HSP 1 Score: 159.1 bits (401), Expect = 7.400e-36
Identity = 71/100 (71.00%), Postives = 85/100 (85.00%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA 101
            M++RL  FINSPTGPKTTHFWGPVANWGFVLAA+ D +KP + IS  MT  LS+YS++FMRFAWMV+PRNYLLLACHASNE AQLYQL R +++  S++A
Sbjct:    3 MASRLRYFINSPTGPKTTHFWGPVANWGFVLAAMADMQKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNETAQLYQLQRGLRFQASKKA 102
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_024583777.1 (brain protein 44-like protein [Plasmopara halstedii] >CEG47408.1 brain protein 44-like protein [Plasmopara halstedii])

HSP 1 Score: 157.9 bits (398), Expect = 1.700e-35
Identity = 73/102 (71.57%), Postives = 86/102 (84.31%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLS-QEAK 102
            M++RL  FINSPTGPKTTHFWGPVANWGFVLAA+ D +KP + IS  MT  LS+YS++FMRFAWMV+PRNYLLLACHASNE AQLYQL R +++  S +EAK
Sbjct:    1 MASRLRYFINSPTGPKTTHFWGPVANWGFVLAAMADMQKPADVISINMTSALSIYSLIFMRFAWMVKPRNYLLLACHASNETAQLYQLQRGLRFQASTKEAK 102
[Close]
BLAST of NO07G03860 vs. NCBI_GenBank
Match: XP_001699677.1 (predicted protein [Chlamydomonas reinhardtii] >PNW87202.1 hypothetical protein CHLRE_02g113100v5 [Chlamydomonas reinhardtii])

HSP 1 Score: 156.8 bits (395), Expect = 3.700e-35
Identity = 72/100 (72.00%), Postives = 82/100 (82.00%), Query Frame = 0 
Query:    1 MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTGVLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA 101
            M++R MQ++NSPTGPKTTHFWGPVANWGFVLA + D RK PE IS  MTGV+ VYS++FMRFAW VQPRNYLLLACHASNE  QLYQLSR   +  S +A
Sbjct:    1 MASRFMQWVNSPTGPKTTHFWGPVANWGFVLAGLADMRKDPEYISPNMTGVMCVYSVLFMRFAWEVQPRNYLLLACHASNETVQLYQLSRWYSWSNSAKA 100
The following BLAST results are available for this feature:
BLAST of NO07G03860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26988.17.100e-4790.10brain protein 44-like protein [Nannochloropsis gad... [more]
XP_002904178.12.000e-3672.00conserved hypothetical protein [Phytophthora infes... [more]
XP_008900827.12.500e-3672.00hypothetical protein PPTG_08478 [Phytophthora para... [more]
ETP51226.12.500e-3672.00hypothetical protein F442_03602 [Phytophthora para... [more]
KUF93431.12.500e-3672.00Mitochondrial pyruvate carrier 1 [Phytophthora nic... [more]
XP_009537035.15.700e-3671.00hypothetical protein PHYSODRAFT_288894 [Phytophtho... [more]
POM68331.15.700e-3671.00UPF0041 domain containing hypothetical protein [Ph... [more]
OWZ22014.17.400e-3671.00hypothetical protein PHMEG_0003330 [Phytophthora m... [more]
XP_024583777.11.700e-3571.57brain protein 44-like protein [Plasmopara halstedi... [more]
XP_001699677.13.700e-3572.00predicted protein [Chlamydomonas reinhardtii] >PNW... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000462NSK000462Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03860.1NO07G03860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581321gene_2730Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100127g18gene3568Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03860.1NO07G03860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03860 ID=NO07G03860|Name=NO07G03860|organism=Nannochloropsis oceanica|type=gene|length=2309bp
ACGTTGTTATTTACTTCGGTCTTTGATTTCTACATACACAAGCTTGCTTG
CTCGTGTCTCGCAGTACCGTCCTTTCAACGGACTGCTCACCATCCCTCCC
TCCCTCCCTCCCTCTCGCTTTCTCTCCCTCTCTCCCTCCCTCTTCGCCTC
CCCTACTCCCCATCGCTTTCAGACAGACCCAATCCTTCATCCACCTCAAA
CTCCGTCCCTGCATCATCTTCTCCCTCCACCGTGGCCTCCTCCATCTCCT
CCATCTCCTCCTCTTCCTCTTCCTCCTCCTCCTCCTCCTCCTCTTCTTCC
TCCTCCTCCTCCTCCTCCTCCCGCCTGGTCACCACCCCTATGGGCGTGGG
AGCAACAATGGTCTGAATTTCAACCAGCTTATCCTCCAGCTGTCGTTCCA
TGTGCGCAAGCATTTCCAGCTCTCCGTGCTCCAACCTCGGGAACCAGGCT
TCATATCGACGGGGGAGGGAAACGAGGGAAGGGAGGGGAAAGAGATGAAT
GCTGGACCGCGTTATTTTCCGCCTACAAACTCGGTGACATGAGGCAAACT
TACGCACGACGAGACTTTGAGGGGCGAGTTAGAGGGATCTACCACGCTAT
AACACTTACCCTCCTCGGTGTCGCGGGGCTCCAAAAGTGGAAAGGGAAAG
GGGATGGCGTTCATGGCTTGTGCTTAGCGTCCGAGTGTCCTCGCGGGTCA
AAATTCTCCTCCCCCTCCTTCTCTTTTTTTGGGGTAAGCGGAGGTGGTCT
GCGCGGTTTGCACGGTAGGGATTGTGTGTTGAGAGTGAAGCGCGGTACTG
TGGACTTGGCGATGATGGGAGCGAGCTGAAGGCTTGTGCCGAGCGAGGGT
GGAAAGGCCAGCCTCTACCCAGACACACTTCCCATCCCCCCTCCACCATC
TCTACGAGCAGGCACAATAACAGTGCTGTCTCTGTGTTTTGCCAATATAG
CAGTGGTAAGGGTGTCACCCCAGCCAAAATGAGAGCAAGAGAGAGAGGTG
AAGAAAGAAGCATGTCGGTCATAATCACAGGCCTCATAGCCCCTCATCTC
CCCACCACATCCAAACCCTCGCATGACCTACCCAAGACCACCACCCTATA
TCCTGCGTTCCGCAAGCACAGGCCGCTTTTTAATCCACCAGCCGGCTGCC
TGCTCCATCCCTTGCTCGTCGTTGCTGATTGCTTGCTCCTCTCCCTCCTA
GCTACACACGTCTAATTCATGTCGGCGCGACTTATGCAGTTTATCAACAG
CCCCACAGGCCCCAAGACAACTCATTTCTGGGGGCCTGTGGCCAATTGGG
GGTTTGTGTTGGCGgtatgtgatggcagcgggtgggaggagagggaggga
aggaaggcggggaaagtggaggagggagggtggtaggaagaggaggtagg
gcgtctattcatgcgctgtccacactaatacagGCAATCATCGACTCGCG
GAAGCCACCGGAGACTATTTCTGCCAAGATGACGGGTGgtacgtacctcc
gcaagctgggccgtgttgatttttctccctctttttggggagtattaatt
ttgttcttttttttgggtgggtgtgggggggcagaatccgttccttcact
tccatcaacctcgctcgctcgctctttcctctccctctctgtcattcctc
tttgtgcatggactgtttggagcgtatgcgttgtttatcgagctagcctc
ccgctgttaacgacccttgtggcaatcctgccttcagccccctctaacga
tctcattcactccttcctccctcctctttttcctccctcagTCCTCTCCG
TTTATAGCATGATGTTTATGCGTTTTGCCTGGATGGTACAGCCACGAAAC
TACCTCTTGTTGGCGTGCCATGCCTCCAATGAATGCGCGCAGCTTTATCA
GCTGTCGCGGAGAATCAAATATGAgtaagtggggaagggtggaggatcgg
agaaagggaggcaaggagaaaggtcgggagaaagggcgactttgaagatg
aagacgtgacttgtgttattacgctcctatactcgcaaccgacctcaagc
attccttgacccacacacacacacaccccacacagCCTGAGTCAGGAGGC
AAAGTGATAATTGGACGACGAATCATCTCACAGCACCGGCTACGATTGCT
CTAGATACGGATTTCTTAGTATGGGGGGAGGGAGAAAGGTTAGGGTGTGA
CGAGGTGCACAAGAGACGAGCGGAGAAAGTAGACTGGAGGAAAGAAAAAA
GTTGAAGGGTGAGGGGGAAAAAAAACGACGGCACTCGGTAGTATGTCGTT
TTAAACGCC
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protein sequence of NO07G03860.1

>NO07G03860.1-protein ID=NO07G03860.1-protein|Name=NO07G03860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=102bp
MSARLMQFINSPTGPKTTHFWGPVANWGFVLAAIIDSRKPPETISAKMTG
VLSVYSMMFMRFAWMVQPRNYLLLACHASNECAQLYQLSRRIKYDLSQEA
K*
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Synonyms
Publications