NO07G03830, NO07G03830 (gene) Nannochloropsis oceanica

Overview
NameNO07G03830
Unique NameNO07G03830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1369
Alignment locationchr7:1071921..1073289 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1071921..1073289 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO07G03830 vs. NCBI_GenBank
Match: EWM26980.1 (hypothetical protein Naga_100127g12 [Nannochloropsis gaditana])

HSP 1 Score: 277.7 bits (709), Expect = 5.100e-71
Identity = 165/340 (48.53%), Postives = 204/340 (60.00%), Query Frame = 0 
Query:    1 MASGAGKLTTSTRRTPSPSSHSPIH-----PIHDHGRHTPPIAEENLKNIDLGNVGSGGGHEHLGRSPSHAAVVPIHANSAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSVWTLVLAQIKRFDIELSIGFLITIFICSAIAVSAQDEGWFLATAPLENFPLVNTLASFSIGLSSYVTEAHGGDEQLTLYRHEGPISELSLRAGDIAVSLHICLIASVVLSVGLLWYVLQLHDYLKSSEILPSRELTTRLLGLKALTLGLLLLGLGTGAFRAVIWNDLKXXXXXXXXXXXXXXXXXXXTSFTNIESSELFLETRYAYSLTIAAWFLWLVVGSILMLR 336
            +ASGAG     +R +P P S SP++      IHDHGRHTPPI E +LKNIDL     GGGH     +P  A     H + +                              ASS W L LAQ+KRFDIE  I FL+ IF CSA A+  +D+GWFL TAPL  FPL N  ASF+IGLS+YV EA+GGDE+LTLYRH G ISELS RAG IA+ L++CL+ S++LSV LLWY+   + YLKSSE+LPS+E   RL GL ALTLGLLL  LGTG+FRAVIWND++                    SFT+I++  L L   YAY  T+  W LW++VG + + R
Sbjct:    9 LASGAGNFRNGSRMSP-PLSRSPMNRASPPSIHDHGRHTPPIPEASLKNIDL-----GGGHV----APHQAIRRRDHLSPS------FVLSKQYPIPEVQELTAVDGRGQGASSAWRLALAQLKRFDIEWVISFLLIIFTCSATAIFTRDKGWFLLTAPLVGFPLSNAFASFNIGLSTYVAEAYGGDERLTLYRHVGRISELSPRAGSIAIYLYVCLVFSLLLSVILLWYIALFYQYLKSSEVLPSKESAVRLFGLGALTLGLLLSALGTGSFRAVIWNDMR----HRRNSSESVNGADASPSFTDIDTGALALRNGYAYGSTVITWLLWIIVGCVFISR 328
The following BLAST results are available for this feature:
BLAST of NO07G03830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26980.15.100e-7148.53hypothetical protein Naga_100127g12 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000465NSK000465Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03830.1NO07G03830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669267gene_2727Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100127g12gene3565Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03830.1NO07G03830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03830 ID=NO07G03830|Name=NO07G03830|organism=Nannochloropsis oceanica|type=gene|length=1369bp
ACAGCTCGTTTGAGCAAAGCATTCGATCAAGTTCTACACCATGGCTTCTG
GCGCCGGGAAGCTGACTACCAGCACACGGAGGACGCCTTCTCCTTCTTCG
CATTCGCCCATTCATCCCATCCATGACCACGGCCGACACACGCCGCCCAT
TGCTGAAGAGAACCTCAAAAACATCGATCTGGGGAACGTTGGGAGTGGAG
GCGGGCATGAGCACTTGGGGCGTTCGCCTTCCCACGCAGCTGTCGTTCCA
ATCCACGCTAACTCAGCCCATGCTTCAGCCTCTTCCTCCGCCTCTGCATC
CGCATACGAGGAGACATACCCACCAAAACAGAGTCGGGGACACGGACGGG
GTCATGCAGCATCATCGGTGTGGACGTTGGTTTTGGCTCAAATAAAACGG
TTCGATATTGAGTTGTCCATAGGTTTCCTCATCACCATTTTTATTTGCTC
CGCCATCGCCGTTTCTGCGCAGGACGAGGGGTGGTTCCTCGCTACAGCAC
CATTGGAGAACTTCCCACTCGTCAATACCCTGGCTTCATTCAGCATTGGT
CTTAGCAGCTATGTCACCGAGGCGCATGGTGGAGACGAACAGCTCACCCT
ATACCGACACGAAGGCCCCATTTCTGAGCTTTCTCTTCGAGCAGGAGATA
TTGCCGTGTCCCTGCACATATGCCTTATTGCTTCAGTAGTTTTGTCTGTA
GGTTTGCTCTGGTACGTATTGCAACTTCATGATTACCTGAAGAGCAGTGA
GATTTTGCCTTCGCGCGAACTGACCACGCGTCTCCTGGGCCTCAAGGCTC
TGACGCTTGGCCTGTTGCTGCTGGGGTTGGGAACAGGTGCATTCCGCGCT
GTTATTTGGAATGATTTGAAGGAACATCACAACGACGGCAGCAGTAGCAG
CAGTAGCAGTAGCAGCAGTGGTGGTCCAACGTCGTTTACGAATATTGAAT
CAAGCGAGCTCTTCCTCGAGACGCGCTATGCTTATTCTCTCACAATAGCA
GCGTGGTTCCTCTGGCTAGTTGTCGGGTCTATCCTTATGTTACGGCCGTG
TTACCGTAACATAAATATTTATATGATACGGGGCCACGGGCGCGAGGTTA
GCCGCGATGAGGGAGGAGAAGAAGGAAGGAGCTGAGGTGAGAGAGATGGA
GGGAGTAGAGAAGGAGTTCATGGAGGAGATGCAGGCTGCGGAGGTATAGC
TTGACAAATGGAATGGAGAATGGTGGCATTGACATGTAGCAAAAGTAGAC
ATGCTTGGATTTCCTTGAGATAAGTGTTTTATGTGCATGTAAGAAATGGA
AAAGAAAGAAGCGGAGAACAGTTGCTGGCTCGAAAGAGTGGCAAATGTGG
AGCTGACCCGTCCATGTCG
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protein sequence of NO07G03830.1

>NO07G03830.1-protein ID=NO07G03830.1-protein|Name=NO07G03830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MASGAGKLTTSTRRTPSPSSHSPIHPIHDHGRHTPPIAEENLKNIDLGNV
GSGGGHEHLGRSPSHAAVVPIHANSAHASASSSASASAYEETYPPKQSRG
HGRGHAASSVWTLVLAQIKRFDIELSIGFLITIFICSAIAVSAQDEGWFL
ATAPLENFPLVNTLASFSIGLSSYVTEAHGGDEQLTLYRHEGPISELSLR
AGDIAVSLHICLIASVVLSVGLLWYVLQLHDYLKSSEILPSRELTTRLLG
LKALTLGLLLLGLGTGAFRAVIWNDLKEHHNDGSSSSSSSSSSGGPTSFT
NIESSELFLETRYAYSLTIAAWFLWLVVGSILMLRPCYRNINIYMIRGHG
REVSRDEGGEEGRS*
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Synonyms
Publications