NO07G03810, NO07G03810 (gene) Nannochloropsis oceanica

Overview
NameNO07G03810
Unique NameNO07G03810
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1159
Alignment locationchr7:1066828..1067986 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1066828..1067986 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO07G03810 vs. NCBI_GenBank
Match: EWM26983.1 (hypothetical protein Naga_100127g10 [Nannochloropsis gaditana])

HSP 1 Score: 239.6 bits (610), Expect = 7.700e-60
Identity = 125/179 (69.83%), Postives = 145/179 (81.01%), Query Frame = 0 
Query:    1 MSFTSILRTIIFNLGALAVAYVLLLSGVHKFTYKLWRVELSQGLYRSLNKSYLLATEQAYKHIDAFFASHPSLPPALPRYHASTIKAFVGVFELLLAFLWLTR-RWRAAAWGSALCFASWMAIAWSDFLPDSAGGEEGMSFALFFFGLSLGLLFTGPRSGKNIGGDVAREGAGGASSKK 179
            MSF S+LRTI+FNLGALAVAYVLLLSG+HKFTYKLW +ELSQ LYRSLNKSYLLATEQAYKH+DA  A+HPSL   +PR+ AST+K  VGVFELLLAFLW+TR RWR AA GSALCFA W+AIAWS+FLPD+AG E+G++FALFF  LS+GLL+  P  G      V    AGGA  ++
Sbjct:    1 MSFASLLRTILFNLGALAVAYVLLLSGIHKFTYKLWGIELSQDLYRSLNKSYLLATEQAYKHVDALLAAHPSLHARVPRFPASTVKTAVGVFELLLAFLWMTRHRWRTAARGSALCFACWVAIAWSEFLPDAAGVEDGVTFALFFVALSIGLLYIAPADGTEA---VEAGRAGGAMKRR 176
The following BLAST results are available for this feature:
BLAST of NO07G03810 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26983.17.700e-6069.83hypothetical protein Naga_100127g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000467NSK000467Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03810.1NO07G03810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337135gene_2725Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100127g10gene3563Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03810.1NO07G03810.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03810 ID=NO07G03810|Name=NO07G03810|organism=Nannochloropsis oceanica|type=gene|length=1159bp
ACAGAGAGCAGCAACCCACTAATCACGCGGACTGTCTCCCACCGGCGTCG
TCCCCCTCCGAACGACAGAGCAACCAGCATCATTCGGAGCCTTTACTTAT
GTCGTTCACATCGATACTACGGACCATCATATTTAACTTGGGCGCCCTGG
CGGTGGCATACGTCCTCCTTCTGAGTGGTGTGCACAAATTTACGTACAAG
gtacgttgaaaggaaggagcgcggacagcagggaggatgagaccgaaggg
acttggcggggcgcgacctggtgctacgtcgaagggtcttgctcatggcc
ttggcgctgaacaaggtccgcactggtcaaggacgaatatgggggaggaa
ggagaggcttaaggaggactcgtaatgtccgccagacaagccttgacatt
cctattcgaaccattttcccagtcaatgcacagatataaatgtattcttt
ccatccaccccttccttcttttcattttcttgctttcgccattcactcat
ccgctgcatcccgtcaccgtgtacctattatagCTTTGGCGCGTCGAGCT
CTCCCAAGGTCTCTACCGCTCCCTCAACAAGTCCTACCTCCTGGCGACCG
AGCAGGCCTACAAACACATCGACGCCTTTTTTGCCTCCCACCCGTCTCTC
CCTCCCGCCCTCCCGCGCTACCATGCCTCGACCATTAAGGCCTTCGTTGG
AGTGTTTGAATTACTGCTGGCTTTTCTCTGGCTGACGCGACGCTGGCGGG
CCGCGGCATGGGGAAGCGCGTTGTGCTTTGCCTCGTGGATGGCCATTGCG
TGGTCAGATTTCTTGCCGGACTCGGCGGGGGGGGAGGAAGGCATGTCATT
CGCCTTATTCTTCTTCGGCTTGTCGCTGGGCTTGCTATTTACCGGGCCGA
GGAGTGGCAAGAATATTGGAGGGGACGTGGCGAGGGAAGGTGCAGGCGGC
GCCTCATCGAAGAAGCAGAGATGAAAGAAAGGGATGAAAGGGATAGGGAT
AGAGAGATGTGAGGAAATGAAACTAAAAAGTATGTAAAGTAAAAGTAAAG
AAAGGGGAATGATAGGACGGAGGGAATGCGTTGACTTGAGCACCAAGAAA
ACTTCTCCCTACTTTGTCCTCCTCCACAGGATATGCACCAAGTGACGACA
AAGACGTGG
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protein sequence of NO07G03810.1

>NO07G03810.1-protein ID=NO07G03810.1-protein|Name=NO07G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MSFTSILRTIIFNLGALAVAYVLLLSGVHKFTYKLWRVELSQGLYRSLNK
SYLLATEQAYKHIDAFFASHPSLPPALPRYHASTIKAFVGVFELLLAFLW
LTRRWRAAAWGSALCFASWMAIAWSDFLPDSAGGEEGMSFALFFFGLSLG
LLFTGPRSGKNIGGDVAREGAGGASSKKQR*
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Synonyms
Publications