NO07G03750, NO07G03750 (gene) Nannochloropsis oceanica

Overview
NameNO07G03750
Unique NameNO07G03750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1752
Alignment locationchr7:1052833..1054584 -

Link to JBrowse

Properties
Property NameValue
DescriptionPhosphatidylinositol-glycan biosynthesis class S protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1052833..1054584 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0042765GPI-anchor transamidase complex
GO:0042765GPI-anchor transamidase complex
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0016255attachment of GPI anchor to protein
GO:0016255attachment of GPI anchor to protein
Vocabulary: INTERPRO
TermDefinition
IPR019540PtdIno-glycan_biosynth_class_S
Homology
[Close]
BLAST of NO07G03750 vs. NCBI_GenBank
Match: EWM26978.1 (Phosphatidylinositol-glycan biosynthesis class S protein [Nannochloropsis gaditana])

HSP 1 Score: 201.1 bits (510), Expect = 9.700e-48
Identity = 124/315 (39.37%), Postives = 164/315 (52.06%), Query Frame = 0 
Query:    1 MAGTRLLTQLWFTAGIGLLAPFAFWSAWWPVGFKSVTLPPLPLSLQKPHTPFPLTLHVLLPYDHHLHEGTEVEIESIRVVWTTISIPMEG---KDESLLVQARRLLQEHAP---GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNITWRLQERFGYT---SNSINIASRACHDLAQALSHVIFNPPPSHLISLQRNVQLALLSQDASHRFCKWNVSRLLDHYLNPLFHQLAPLTTLLPSLQXXXXXXXXXPSTTQRHGHRIPTSALIGMEGYWNENLLPPSLPFVGEGMGEPVPPLRVIFYCPATEEEQRMVFV 307
            MAGTRL TQLWF AG+ +LAPFAF  AWW  GF+ V+ P +P SL+ P  PF   L VL+ +D       E+E++  RV    +S        ++E+L   ARR + E+A                                    ITWRL+ERFGY    ++  +I  +A  +L+ A + + F P  S  + L R +QL L+SQDAS RFC+WN + LL+ +LNPL   L PLTT LPSLQ           T   HG+ +P S L G+  YW   LLPPSL  V    G    PLR +FYCPA+  EQ + F+
Sbjct:    1 MAGTRLWTQLWFLAGVVVLAPFAFRLAWWQEGFERVSFPDIPSSLRPPGAPFLPFLVVLVGHDFS-SSLMEMEVDDFRVALKRVSFIAASSGQENETLESFARRAVAENAAPEMDANMLQYWLVLLPSSLPMSSTEADSSTPSISGITWRLEERFGYARRGNDDHSIIQQAGRELSHARAQISFRPATSTPLPLAREIQLTLVSQDASVRFCRWNRAHLLNRHLNPLVRALIPLTTFLPSLQLLPYGTLLPVQTKHAHGYPLPLSTLTGIRQYWETTLLPPSLSLVAT-PGPMASPLRFLFYCPASSSEQSLAFM 313
The following BLAST results are available for this feature:
BLAST of NO07G03750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26978.19.700e-4839.37Phosphatidylinositol-glycan biosynthesis class S p... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000474NSK000474Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03750.1NO07G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337141gene_2717Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100127g3gene3557Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03750.1NO07G03750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03750 ID=NO07G03750|Name=NO07G03750|organism=Nannochloropsis oceanica|type=gene|length=1752bp
ATGGCCGGCACTCGGCTTTTGACGCAGCTCTGGTTCACTGCAGGGATCGG
TCTGCTGGCACCTTTTGCGTTTTGGTCAGCTTGGTGGCCCGTGGGGTTTA
AGAGCGTGACTTTGCCTCCCTTGCCGCTGTCACTGCAGAAACCGCATACA
CCGTTTCCCCTAACTCTGCATGTTTTACTTCCCTACGATCACCACCTCCA
TGAAGGGACGGAAGTGGAGATAGAAAGCATCCGAGTCGTCTGGACTACAA
TCAGCATTCCTATGGAAGGGAAGGACGAATCACTCTTGGTACAAGCGCGG
CGCCTGCTCCAGGAGCACGCCCCCGGAGATGACGACGAGAGGCTCTTGCA
GTATTGGCTCGTCCTACTCCCTACCCCACAGCCCGCCTCCTCTTTAGCAT
CATCATCGTCGTCCTCAAACATCACCTGGCGCCTTCAAGAACGCTTCGGG
TACACCAGCAATTCCATCAATATAGCCAGTCGAGCTTGTCACGACCTCGC
CCAGGCCCTCAGCCACGTCATTTTCAACCCACCTCCCTCCCACCTCATCT
CCCTCCAACGTAACGTGCAATTGGCCCTTCTCAGTCAAGATGCCAGCCAT
CGCTTCTGCAAATGGAACGTTTCCCGCCTATTGGACCACTATCTCAACCC
TCTTTTCCACCAGCTAGCGCCCTTGACCACCCTCCTTCCCTCCCTCCAAC
TCCTCCCCTTCGGGACGCTCCTCCCACCCAGCACCACGCAACGTCACGGG
CATCGTATTCCTACCTCTGCGCTCATTGGCATGGAAGGATACTGGAATGA
GAATCTTCTCCCTCCCTCACTCCCTTTCGTGGGGGAAGGAATGGGAGAGC
CCGTGCCTCCCCTCCGCGTCATTTTCTACTGCCCAGCCACGGAGGAGGAG
CAAAGGATGGTGTTTGTTGCGGATGAGCACAAGGGTGGAGAGGATGCTCC
GTCGTCCTCGTCCTCTATTGGGGTGGAGCTGGAAGACTGGGGCGGGATGA
TGGTCCTCCAAACAAACAACCATTCCACTTCCTCCCCTCCGTCCTCTTCC
TCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCTCCGCCCTT
CTACTCTTTCCTCTCTGATGCCAACTACAGATCCATTACCACCTTCCTCA
AAATCCTCCTCCGCCACTCGCTGGGCTTCCCCTCCTCCCTCCCTCCCTCC
CTCCCTCCCTGCCGCACCTCTCAAGCCCTGCATCCTCTCGAATTGGACAC
GATGGCAATTCACACGGCGGAGGAACGACGACGCGACACCCTCCACCGCC
TCTCCCTCCTTCGTGACCTCCTTTCTACTCACCCAGGCATGTCCTGTCCT
GCCCGTGTTGCAAGCCGCGTGGAAGCAGCTATGGCCAGCTTACAGACTCG
GGAAGACGACAGAGAAGGCAGCATTAGTGGTAACAAGAACAGCAGCAGGA
GCAGAAGCAGAAGCGGAGCCACGTCTATCTCTTTCTCCCCCTCCCCCTCT
TCTTTTTGGCATACATTAATGAATTTAAACAACGCGTGGGCTGCTGCCCA
AGAAGCACAACAAGACGAGGCCCTCCTTCCTCCCCCCCACCACCCTTTCG
AGCACTACGCAGCCATCTTCCTCCCCCTTCTCCTCCCTGTTCTCCTCCCT
CTACTCCTGGGACTACAAAATGAGTGGATGCGATACGAGAAGAAAGTGAA
TTTGAAGAAGCAGAAGAAGCAGAAGAAGAAACAGAAGCAGAAGACGGGTT
GA
back to top

protein sequence of NO07G03750.1

>NO07G03750.1-protein ID=NO07G03750.1-protein|Name=NO07G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MAGTRLLTQLWFTAGIGLLAPFAFWSAWWPVGFKSVTLPPLPLSLQKPHT
PFPLTLHVLLPYDHHLHEGTEVEIESIRVVWTTISIPMEGKDESLLVQAR
RLLQEHAPGDDDERLLQYWLVLLPTPQPASSLASSSSSSNITWRLQERFG
YTSNSINIASRACHDLAQALSHVIFNPPPSHLISLQRNVQLALLSQDASH
RFCKWNVSRLLDHYLNPLFHQLAPLTTLLPSLQLLPFGTLLPPSTTQRHG
HRIPTSALIGMEGYWNENLLPPSLPFVGEGMGEPVPPLRVIFYCPATEEE
QRMVFVADEHKGGEDAPSSSSSIGVELEDWGGMMVLQTNNHSTSSPPSSS
SSSSSSSSSSSSSSPPFYSFLSDANYRSITTFLKILLRHSLGFPSSLPPS
LPPCRTSQALHPLELDTMAIHTAEERRRDTLHRLSLLRDLLSTHPGMSCP
ARVASRVEAAMASLQTREDDREGSISGNKNSSRSRSRSGATSISFSPSPS
SFWHTLMNLNNAWAAAQEAQQDEALLPPPHHPFEHYAAIFLPLLLPVLLP
LLLGLQNEWMRYEKKVNLKKQKKQKKKQKQKTG*
back to top
Synonyms
Publications