NO07G03660, NO07G03660 (gene) Nannochloropsis oceanica

Overview
NameNO07G03660
Unique NameNO07G03660
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1146
Alignment locationchr7:1018227..1019372 +

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger mynd domain-containing protein 19
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1018227..1019372 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Homology
BLAST of NO07G03660 vs. NCBI_GenBank
Match: EWM27007.1 (zinc finger mynd domain-containing protein 19 [Nannochloropsis gaditana])

HSP 1 Score: 344.4 bits (882), Expect = 4.700e-91
Identity = 187/389 (48.07%), Postives = 234/389 (60.15%), Query Frame = 0
Query:   16 SPSSSAVLTPSPLPASSLESELARGLKLTEEXXXXXXXXXXXXXXKTSNRSNIQ-------------PNKQGITVLFEVDLQYAPLAEDADASATKRKCHLPSCPVTDGSSSTPLASCAQCKTVRYCGRVHQTQDWKLGHKHECAQWKTLRAMAVAAEVLASAELKGGADEEEAGLNXXXXXXXXXXXXXXXXXXXKAIYDEDIASPPSTDT---SSFPAATRAT-ASTFPLPL------NFDRQDIACKLLCKIRLHLGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLERSVLIHFLTWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVMRVPLVPDARACRKLAEDYQWADRTSVKLELD 382
            SP S+         +SSLE+ELARGL+LT E                 N S                PNK GI++LF+ DLQYAP +E  +  +T +KCHLP+C   +  +S  L+ CAQCK  RYCGR HQ  DWK GHKHECAQWKTL AM  ++          G ++  A                      ++  +        TD    S+  A++ A+ A+  P P+        D++D+A KLLCK+RLHLGPYT+AHYD+QGRGF F+QSTATA +L ++RPI   G P++R VL+H+LTWGEF+SVVLEDDFEYTVAR PLQ ALA YDPE EYV ++KLRCGFL V RVPLVP A ACR+LAEDY WA+R SV LELD
Sbjct:    4 SPQSADTKGMPSCSSSSLEAELARGLQLTAELTSYSKGKTNSTSSSGGNESPSSTNSSPVDSRQAAFPNKAGISILFDADLQYAPPSETDEEGSTLQKCHLPACTQIEDRASIRLSLCAQCKVARYCGRAHQVLDWKQGHKHECAQWKTLMAMKASSREADEPLPTAGGNKTNASKAQIPTEVEAPSLQTAEFPDVESTNESGSLKSTRTDEKHGSTLTASSAASEAAVSPRPVLSPSFSTLDKKDVASKLLCKLRLHLGPYTLAHYDRQGRGFGFLQSTATAGELLLSRPINRLGHPVQRHVLLHYLTWGEFVSVVLEDDFEYTVARTPLQAALAAYDPEVEYVAVVKLRCGFLGVFRVPLVPHAAACRRLAEDYAWAERASVTLELD 392          
BLAST of NO07G03660 vs. NCBI_GenBank
Match: CBJ33540.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 141.7 bits (356), Expect = 4.600e-30
Identity = 64/145 (44.14%), Postives = 95/145 (65.52%), Query Frame = 0
Query:  235 DRQDIACKLLCKIRLHLGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLERSVLIHFLTWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVMRVPLVPDARACRKLAEDYQWADRTSVKLE 380
            DRQ +  ++L ++RL+L P+ + H +  GRGF FVQ+     +L   RP+ S GR L+RS+++HFL+ GEF+  VL+DDFE  V R PL+ A+  YD + E VVL + RCG++AV+ VPLVP    CR+L  +Y+  D   + L+
Sbjct:  154 DRQSVVARVLGRVRLYLCPFAVCHGEALGRGFVFVQTPNPVLELEYLRPVNSNGRRLDRSIILHFLSMGEFVDAVLQDDFELGVIRSPLEAAVESYDTKAEMVVLFRARCGYMAVVVVPLVPGWAVCRQLGLEYKEKDALQLNLD 298          
BLAST of NO07G03660 vs. NCBI_GenBank
Match: XP_002180420.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC47828.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 117.1 bits (292), Expect = 1.200e-22
Identity = 60/148 (40.54%), Postives = 90/148 (60.81%), Query Frame = 0
Query:  235 DRQDIACKLLCKIRLHLGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLE-RSVLIHFLTWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVMRVPLVPDARACRKLAEDYQWADRTSVKLELD 382
            D+Q    +L  +IR ++ PY +      GRGF F+QS  T   + +  P  S GRP + R++LI++LT GEF + V  +DFE    R  LQEA+  YD EDE V+L++ RCG +++    LVPD R C+KL  DY +++ T+  L+L+
Sbjct:   88 DKQQACNELFGRIRFYVCPYAVHKATTLGRGFLFIQSDRTLATMSLTLPKDSYGRPTDNRALLIYYLTLGEFDAEVCREDFEMATVRTKLQEAVENYDEEDEIVILMRFRCGHVSLGTSALVPDHRVCKKLGIDY-YSESTAAALQLN 234          
BLAST of NO07G03660 vs. NCBI_GenBank
Match: OEU16333.1 (hypothetical protein FRACYDRAFT_160780, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 117.1 bits (292), Expect = 1.200e-22
Identity = 58/147 (39.46%), Postives = 90/147 (61.22%), Query Frame = 0
Query:  236 RQDIACKLLCKIRLHLGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLERSVLIHFLTWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVMRVPLVPDARACRKLAEDYQWADRT-SVKLELD 382
            +Q+I  +L  +IR ++ PY +    + GRGF F+Q+  T  DL +  P    G  + RS+L+HFLT GEF S V ++DFE  + R PL++A+  Y+ E E V+L + RCG +++ +  LVPD   C+KL +DY   +   +V+L LD
Sbjct:   79 KQEIRNELFQRIRFYVCPYAVLRTSELGRGFLFLQTDKTLQDLSVYIPKDCTGHTVTRSILLHFLTLGEFDSEVCKEDFELAMMRTPLKDAIDSYETEKEVVILCRFRCGNMSLGKAILVPDYGICKKLGQDYYAENPAGAVQLNLD 225          
BLAST of NO07G03660 vs. NCBI_GenBank
Match: XP_002286115.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED95756.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 102.4 bits (254), Expect = 3.100e-18
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 0
Query:  219 AATRATASTFPLPLNFDRQDIACKLLCKIRLHLGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGR--PLERSVLIHFLTWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVMRVPLVPDARACRKLAEDYQWADRTSVKLELD 382
            AA +       +  + D+      +L +IR +  PY++      GRGF F+QS ++   L +  P  S G+  P +RSVL+H+LT  EF S V  +DFE    ++ L+ A+  Y+ E E  VL++ RCG +AV   PLVPD + C+ L ++Y  + + S  ++L+
Sbjct:  107 AAYKRVGEDMMIIFSDDKDSARQDILSRIRFYAFPYSVHKSSIVGRGFLFLQSDSSLAVLSLPAPTMSNGKKYPKQRSVLLHWLTMKEFSSEVCMEDFELASVQKELKSAVESYNEEVEVPVLMRFRCGHVAVGIAPLVPDIKLCKMLGKEYYGSGKGSGAVQLN 271          
BLAST of NO07G03660 vs. NCBI_GenBank
Match: GBG26549.1 (SET and MYND domain-containing protein DDB_G0277331 [Aurantiochytrium sp. FCC1311])

HSP 1 Score: 99.8 bits (247), Expect = 2.000e-17
Identity = 45/130 (34.62%), Postives = 78/130 (60.00%), Query Frame = 0
Query:  243 LLCKIRLHLGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLERSVLIHFLTWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVMRVPLVPDARACRKLAEDYQWAD 373
            +L +IR+++ P+        G+GF  ++S +T        P+ ++G+PL RSV + +LT GEF  +  EDDFE    R  L+EAL  Y+ + + VV++ L+CGF A + +P+VP+    ++LA  Y++ +
Sbjct:  126 MLRRIRMYMCPFAAGFSLLHGKGFVLLRSNSTLQQWVYEFPMDAEGQPLRRSVQLQYLTLGEFDGLAFEDDFELAAVRPKLEEALEAYEVQTQVVVVIVLKCGFFACVTIPMVPEFAIGKQLAAMYKYVE 255          
BLAST of NO07G03660 vs. NCBI_GenBank
Match: GAX17827.1 (hypothetical protein FisN_18Hh027 [Fistulifera solaris])

HSP 1 Score: 97.8 bits (242), Expect = 7.600e-17
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 0
Query:  243 LLCKIRLHLGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLERSVLIHFLTWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVMRVPLVPDARACRKLAED-YQWADRTSVKLELD 382
            +L +IRL+  PY +      GRGF F+QST T         +T  GR   RSVL+H+LT GE+ + V  DDFE T  R  LQ+A+  YD + + VVL++ RCG +AV  +PL  +   C +L ++ YQ     +++L+LD
Sbjct:  100 VLHQIRLYAMPYAVYQMQALGRGFLFIQSTQT------LAALTLPGR--NRSVLLHYLTLGEYDAEVCRDDFELTAVRTCLQKAVNDYDAQQQMVVLMRFRCGHVAVGIIPLSLEFAVCLQLGKEYYQNVTAGALELQLD 231          
BLAST of NO07G03660 vs. NCBI_GenBank
Match: GAX20089.1 (hypothetical protein FisN_18Lh027 [Fistulifera solaris])

HSP 1 Score: 94.0 bits (232), Expect = 1.100e-15
Identity = 56/137 (40.88%), Postives = 81/137 (59.12%), Query Frame = 0
Query:  246 KIRLHLGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLERSVLIHFLTWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVMRVPLVPDARACRKLAED-YQWADRTSVKLELD 382
            +IRL+  PY        GRGF F+QST T     +A  +T  GR   RSVL+H+LT GE+ + V  DDFE T  R  LQ+A+  YD + + VVL++ RCG +AV  +PL  +   C +L ++ YQ     +++L+LD
Sbjct:  126 QIRLYAMPYAAHQMQTLGRGFLFLQSTQT----LVA--LTLPGR--NRSVLLHYLTLGEYDAEVCRDDFELTAVRTCLQKAVNDYDAQQQMVVLMRFRCGHVAVGVIPLSLEYAVCLQLGKEYYQNVTAGALELQLD 254          
The following BLAST results are available for this feature:
BLAST of NO07G03660 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM27007.14.700e-9148.07zinc finger mynd domain-containing protein 19 [Nan... [more]
CBJ33540.14.600e-3044.14conserved unknown protein [Ectocarpus siliculosus][more]
XP_002180420.11.200e-2240.54predicted protein [Phaeodactylum tricornutum CCAP ... [more]
OEU16333.11.200e-2239.46hypothetical protein FRACYDRAFT_160780, partial [F... [more]
XP_002286115.13.100e-1833.94predicted protein [Thalassiosira pseudonana CCMP13... [more]
GBG26549.12.000e-1734.62SET and MYND domain-containing protein DDB_G027733... [more]
GAX17827.17.600e-1740.00hypothetical protein FisN_18Hh027 [Fistulifera sol... [more]
GAX20089.11.100e-1540.88hypothetical protein FisN_18Lh027 [Fistulifera sol... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000484NSK000484Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03660.1NO07G03660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581249gene_2705Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100079g14gene3544Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03660.1NO07G03660.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03660 ID=NO07G03660|Name=NO07G03660|organism=Nannochloropsis oceanica|type=gene|length=1146bp
ATGCCTACAGGCACAAAAAAGAAGTCGGAGGCGTCGAACTCCTTGTCACC
TTCCTCATCCGCAGTCCTTACACCGTCACCATTGCCAGCCTCCTCCCTCG
AATCAGAGCTGGCCCGGGGCCTGAAGCTCACAGAGGAGCTCACGTCGTCC
ACCTCTACTAGCACCACCGAAAGCGCTTGCAAAACCTCCAACAGATCCAA
CATTCAGCCCAACAAGCAAGGCATCACCGTACTCTTCGAAGTTGATCTGC
AATATGCCCCCCTGGCCGAGGACGCCGACGCTTCCGCCACGAAGCGCAAA
TGTCACTTGCCCTCCTGCCCGGTGACCGACGGCAGCAGTTCCACCCCGCT
TGCAAGCTGTGCACAATGCAAAACTGTACGTTACTGTGGGCGAGTGCATC
AAACGCAGGATTGGAAGCTAGGGCATAAACACGAATGTGCCCAATGGAAG
ACCTTGAGGGCCATGGCAGTGGCAGCCGAGGTGTTGGCAAGTGCCGAGTT
AAAGGGAGGAGCTGATGAAGAGGAGGCAGGCCTCAATGAGAGCAAGAGCA
ATAATACTTCAACACCTAGTACTAGCACCGCCTCTGTGGAATCAAAAGCT
ATCTATGACGAGGACATTGCCTCCCCTCCATCCACCGATACCAGCTCCTT
TCCTGCCGCCACACGAGCTACAGCCAGCACCTTCCCTCTCCCTCTGAACT
TCGACAGACAAGATATCGCCTGCAAACTTCTCTGCAAGATTCGTCTCCAC
CTCGGCCCCTACACCATAGCTCACTACGACAAGCAAGGCAGAGGGTTTGC
TTTTGTCCAATCTACCGCCACGGCCCACGACCTCTTCATCGCCCGCCCCA
TCACCTCGAAAGGGCGCCCGCTAGAGCGAAGCGTCCTCATCCACTTCTTG
ACCTGGGGTGAATTCATCAGTGTGGTCCTAGAAGACGATTTTGAGTACAC
TGTGGCGAGAGAACCGTTACAAGAGGCCTTGGCAGTTTACGACCCGGAAG
ATGAATACGTTGTGCTCCTGAAACTTAGATGCGGGTTTTTGGCCGTGATG
CGCGTGCCGCTCGTGCCGGATGCGAGGGCGTGTAGAAAATTGGCGGAGGA
CTATCAGTGGGCGGACAGGACGTCGGTCAAACTGGAGTTGGATTAA
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protein sequence of NO07G03660.1

>NO07G03660.1-protein ID=NO07G03660.1-protein|Name=NO07G03660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MPTGTKKKSEASNSLSPSSSAVLTPSPLPASSLESELARGLKLTEELTSS
TSTSTTESACKTSNRSNIQPNKQGITVLFEVDLQYAPLAEDADASATKRK
CHLPSCPVTDGSSSTPLASCAQCKTVRYCGRVHQTQDWKLGHKHECAQWK
TLRAMAVAAEVLASAELKGGADEEEAGLNESKSNNTSTPSTSTASVESKA
IYDEDIASPPSTDTSSFPAATRATASTFPLPLNFDRQDIACKLLCKIRLH
LGPYTIAHYDKQGRGFAFVQSTATAHDLFIARPITSKGRPLERSVLIHFL
TWGEFISVVLEDDFEYTVAREPLQEALAVYDPEDEYVVLLKLRCGFLAVM
RVPLVPDARACRKLAEDYQWADRTSVKLELD*
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Synonyms
Publications