NO07G03390, NO07G03390 (gene) Nannochloropsis oceanica

Overview
NameNO07G03390
Unique NameNO07G03390
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1984
Alignment locationchr7:930323..932306 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:930323..932306 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO07G03390 vs. NCBI_GenBank
Match: EWM27064.1 (hypothetical protein Naga_100056g5 [Nannochloropsis gaditana])

HSP 1 Score: 295.8 bits (756), Expect = 2.100e-76
Identity = 142/222 (63.96%), Postives = 172/222 (77.48%), Query Frame = 0 
Query:   66 QFLSPCSPSLASPHTRQAHLTTKCVLLTVGIIASLAWAVGLAAVLLPEWTVEDANVDSTLNAHIGLFETIYHVGEVRESSTLRFCNGLGPIYSTEKCVMWRVAQISALVGLGMGYTGLLFLYSAVGKSWIRPRRMPEVVAWVWTFFLLAGVCALASATAWKFLVLAFMRDHGKLGDGYSVKMGVSMLLMAGVGVIFLTLPFWRIVTQ----YWLVGSGSIAG 284
            Q LS CSPS  SP++R   +T K V L   IIA+LAW +GLAAVLLPEWTVEDANV STL+AHIGLFETIYHVGEVRESST RFCNGLGP+YSTEKCV WR++QI+AL+ LGMGYTG+L L+  +G SWIRP+ +  + AWVW  FL AGVC + SA AW  LVLAF+RDH +L DGYSV MG+SM +MA +G +F++LP WR+V +     W   SG++AG
Sbjct:    6 QHLSTCSPSWLSPNSRLKQITAKRVFLATFIIATLAWGLGLAAVLLPEWTVEDANVQSTLDAHIGLFETIYHVGEVRESSTPRFCNGLGPMYSTEKCVWWRISQITALLSLGMGYTGVLLLFLVIGSSWIRPQHVYSLAAWVWNIFLFAGVCGIGSAAAWNLLVLAFLRDHRELQDGYSVHMGLSMFVMAAMGAVFISLPLWRMVFERCILTWSSSSGTLAG 227
The following BLAST results are available for this feature:
BLAST of NO07G03390 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27064.12.100e-7663.96hypothetical protein Naga_100056g5 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000517NSK000517Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03390.1NO07G03390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|336073gene_2673Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100056g5gene3516Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03390.1NO07G03390.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03390 ID=NO07G03390|Name=NO07G03390|organism=Nannochloropsis oceanica|type=gene|length=1984bp
CCAGGAATGCTTCTTTCTTGCTCTTCCTCCACCTTCTTCAAAGATCATCA
AGCCCACAAAATGCTCACTTCCTTGTCATATCACCCCAAGCGCAGACGGC
TGAGTCCAGTCCACGTGCCAATCCCCCTCGGTATGGCCCCTTTTCCATCC
AAACCACACCAATCAGCGATGGGACTTTGCCCCCTGCAAGCTACGGAACT
CCAGTTCCTATCGCCCTGTTCCCCCTCTCTGGCATCGCCCCACACCCGTC
AGGCCCATCTCACTACGAAATGTGTCCTCTTGACCGTAGGCATCATTGCC
AGCTTGGCCTGGGCCGTGGGGTTGGCCGCCGTCTTGCTTCCAGAGTGGAC
TGTCGAGGACGCCAATGTCGACAGCACTCTCAATGCCCACATCGGGCTCT
TCGAGACCATCTACCACGTCGGAGAAGTCCGGGAGTCCTCCACCCTTCGA
TTCTGCAATGGTTTGGGTCCAATTTATTCGACGGAAAAATGCGTCATGTG
GCGCGTGGCACAAATTAGCGCGTTGGTTGGACTAGGCATGGGATACACGG
GCCTTCTCTTCTTATACAGTGCGGTGGGGAAGAGTTGGATCCGTCCTCGG
AGAATGCCAGAGGTGGTCGCGTGGGTGTGGACATTCTTTCTACTGGCAGG
TGTGTGTGCATTAGCAAGCGCGACTGCGTGGAAGTTTTTGGTGTTGGCTT
TCATGCGGGACCATGGCAAGTTGGGTGATGGGTACTCGGTAAAAATGGGC
GTATCGATGCTGCTTATGGCGGGGGTAGGTGTGATCTTTCTGACTTTGCC
ATTCTGGAGAATAGTGACGCAGTATTGGTTGGTGGGTAGTGGTAGTATAG
CTGGATTTTATAGGGGGAGGAAGAGTTCGTTGCCGTCGTCGTCAGAGGCA
TCAGCTGTAGCAGAGACAGCGGGGAACAGCAGCAGCAGTAGCAGCCGCAG
CAACAGCAGCTGCGGCAGTAGCAGCGGCGGTGGCAACAAGTCTCGTGTTC
AGAGACCACCTCATCGTCATAGCTTCAACAAGGAGGGGATCTCACGCTGG
CGAAAACGGGCGGCGGACATCCTGCAATTGCCCAGGGTGGATAGCATGAA
GGAGAAAGAGGGAGGGTTGGAGGAAGGGGAAGAGGGGAGGGACGCAGATG
AGGAGGAAGGCGAGGGGAGCATGAGGAATCAGAAGGAAAGAATTGAATTG
GCGAAACCTCCCATTGCCATTGGTTGTCAGAGTACAGAGCTTAAGTAGTA
GACAAGAAATGGATAGCACGACATTTAGATTGACTAGGAAGCGCCAAATA
AAACAAATCACACAACACTAAATATACAAATACTGCCATTGTATATTTGG
TTGAACAGACAGCCGTTTCCGATTTGGTTCTCTTTCTTGTCAAACTAACT
TATTTTTGAATCAGAAGAACCACTTTTGTATCTGTCGGCCCTCGCCTACT
TGCAACCGATGCATTTCGCCCTTGGTCAAAGTCATCACATTTGTCCTCCT
GCAACCAACACGTTCCCTCCTCTCCGTCGTAGGTGTTACTTCCTGATCCT
ACTTGCTTCCTACATCCTTATCGCCCGCTTTCCCATTCTCTCGGACTTCT
CCCCTGGTGCACGTTTTTATTTTTTTCGAAAAAAAAATACATAGAACATA
GAACATTAAACATAGAAAATCAAAATCAAAATTTCAAGAGGCGTCAAATA
TGCGCGACTCGACCTACACTTGCAGTACGTACTCCGGCTCTTCTTGTGCC
ATGGCTCTTTTTGGGGACAAAACAGACAAAATTTAACATAGAAAATCAAA
ATAATGGCACGCACATCTCCCGGTGATTCCCTTGGTCTCGCACGGGCTGA
AGGACATTCATTGGTGCCACTGATGGGCAGGATTCACCAGTTAGTGTTAT
GACACATCTAGAGAGGCAAAAGATACATCAAAATTATTGCTCCATAAATG
CGGGCAAGAAATAGGACCGAGCTTCATTTGGTAG
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protein sequence of NO07G03390.1

>NO07G03390.1-protein ID=NO07G03390.1-protein|Name=NO07G03390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MLLSCSSSTFFKDHQAHKMLTSLSYHPKRRRLSPVHVPIPLGMAPFPSKP
HQSAMGLCPLQATELQFLSPCSPSLASPHTRQAHLTTKCVLLTVGIIASL
AWAVGLAAVLLPEWTVEDANVDSTLNAHIGLFETIYHVGEVRESSTLRFC
NGLGPIYSTEKCVMWRVAQISALVGLGMGYTGLLFLYSAVGKSWIRPRRM
PEVVAWVWTFFLLAGVCALASATAWKFLVLAFMRDHGKLGDGYSVKMGVS
MLLMAGVGVIFLTLPFWRIVTQYWLVGSGSIAGFYRGRKSSLPSSSEASA
VAETAGNSSSSSSRSNSSCGSSSGGGNKSRVQRPPHRHSFNKEGISRWRK
RAADILQLPRVDSMKEKEGGLEEGEEGRDADEEEGEGSMRNQKERIELAK
PPIAIGCQSTELK*
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Synonyms
Publications