NO07G03370, NO07G03370 (gene) Nannochloropsis oceanica

Overview
NameNO07G03370
Unique NameNO07G03370
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1434
Alignment locationchr7:926084..927517 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:926084..927517 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO07G03370 vs. NCBI_GenBank
Match: EWM27057.1 (hypothetical protein Naga_100056g7 [Nannochloropsis gaditana])

HSP 1 Score: 439.5 bits (1129), Expect = 1.100e-119
Identity = 220/312 (70.51%), Postives = 257/312 (82.37%), Query Frame = 0
Query:   90 GLFQRRSHLGTTSLAASAMAALFLFSPSAAYAARIKGAAELDAEAYLVDLLKGNPLTGGAEQSPLPIRPARVLDKDFATFLDMTTLGLISKISGQSLEKVNKEVSAFRQTVEPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPDLRARAVFVRDLGEAVLNGVIKGSPGI------KSNDAQKDGLDGTIEGMKQILAYMQSKGFLKDSKINIEDYDRASWDDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISVEKGRQ 396
            GL  RR+ + + + A    AALFL  PSAA  ARIKGAAE+DAEAY  DLLKGNPLTGG EQS + IRPARVLDK+FATFLD TTL L+S+ SG S+E V +EV+AFRQ VEPGFQRRAPFP+ DL+NERCFDCYSYADFRVAAKLIP+LRARA FVR LGE VL  + +G   I      ++ DAQKDGL+  + G+ +ILAYM+ KGFLKD ++N +DYDRASWD+G++LE+LVTV+EPATLGGN+QFTGEGFLFHPDYVAETLLAYL  CGV+ AK+LQYLLDTEYRPNPKDYNPTEVLYQIS+ KG +
Sbjct:   55 GLSSRRTVIDSGATAGKLAAALFLTHPSAA-QARIKGAAEIDAEAYFQDLLKGNPLTGGIEQSAIEIRPARVLDKEFATFLDKTTLKLLSETSGVSMEGVEREVAAFRQAVEPGFQRRAPFPTGDLSNERCFDCYSYADFRVAAKLIPNLRARATFVRQLGETVLGKIFEGQRAIDAKAVPRTYDAQKDGLEEALTGLSRILAYMKLKGFLKDFRVNADDYDRASWDEGFSLEVLVTVIEPATLGGNVQFTGEGFLFHPDYVAETLLAYLALCGVRNAKALQYLLDTEYRPNPKDYNPTEVLYQISLGKGSE 365          
BLAST of NO07G03370 vs. NCBI_GenBank
Match: XP_005854086.1 (uracil-DNA glycosylase [Nannochloropsis gaditana CCMP526] >EKU22271.1 uracil-DNA glycosylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 384.0 bits (985), Expect = 5.500e-103
Identity = 194/282 (68.79%), Postives = 229/282 (81.21%), Query Frame = 0
Query:   90 GLFQRRSHLGTTSLAASAMAALFLFSPSAAYAARIKGAAELDAEAYLVDLLKGNPLTGGAEQSPLPIRPARVLDKDFATFLDMTTLGLISKISGQSLEKVNKEVSAFRQTVEPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPDLRARAVFVRDLGEAVLNGVIKGSPGI------KSNDAQKDGLDGTIEGMKQILAYMQSKGFLKDSKINIEDYDRASWDDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQ 366
            GL  RR+ + + + A    AALFL  PSAA  ARIKGAAE+DAEAY  DLLKGNPLTGG EQS + IRPARVLDK+FATFLD TTL L+S+ SG S+E V +EV+AFRQ VEPGFQRRAPFP+ DL+NERCFDCYSYADFRVAAKLIP+LRARA FVR LGE VL  + +G   I      ++ DAQKDGL+  + G+ +ILAYM+ KGFLKD ++N +DYDRASWD+G++LE+LVTV+EPATLGGN+QFTGEGFLFHPDYVAETLLAYL  CGV+ AK+LQ
Sbjct:   38 GLSSRRTVIDSGATAGKLAAALFLTHPSAA-QARIKGAAEIDAEAYFQDLLKGNPLTGGIEQSAIEIRPARVLDKEFATFLDKTTLKLLSETSGVSMEGVEREVAAFRQAVEPGFQRRAPFPTGDLSNERCFDCYSYADFRVAAKLIPNLRARATFVRQLGETVLGKIFEGQRAIDAKAVPRTYDAQKDGLEEALTGLSRILAYMKLKGFLKDFRVNADDYDRASWDEGFSLEVLVTVIEPATLGGNVQFTGEGFLFHPDYVAETLLAYLALCGVRNAKALQ 318          
BLAST of NO07G03370 vs. NCBI_GenBank
Match: XP_005829043.1 (hypothetical protein GUITHDRAFT_164226 [Guillardia theta CCMP2712] >EKX42063.1 hypothetical protein GUITHDRAFT_164226 [Guillardia theta CCMP2712])

HSP 1 Score: 147.9 bits (372), Expect = 6.700e-32
Identity = 102/342 (29.82%), Postives = 163/342 (47.66%), Query Frame = 0
Query:   59 PPTLKRITIMSSFS-------GYSDSANMPHPRAAPTRGLFQRRSHLGTTSLAASAMAALFLFSPSAAYAARIKGAAELDAEAYLVDLLKGNPLTGG--AEQSPLPIRPARVLDKDFATFLDMTTLGLISKISGQSLEKVNKEVSAFRQTVEPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPDLRARAVFVRDLGEAVLNGVIKGSPGIKSNDAQKDGLDGTIEGMKQILAYMQSKGFLKDSKINIEDYDRASW-DDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISV 391
            P  L R+T+M   S         S   +    R   T     RR  L     A  +   L     +AA   ++ GAAELD   Y+         TG    E + + I PAR +D++ A  L      +  +++G+ +++++  V + R+ V   FQ+R  F   DLT++   D  SY  ++  A+++P    R VF R + + +L  + +        ++ ++G +   +G   +LA ++S GFL+ S + + D+D   W  D     L VT+ +P TL  N+Q  GEG  F PD +   L  YLE CG+     + Y +D  YRPNP DY P++VL QI+V
Sbjct:   17 PSALDRLTLMRGCSIIDRTRHRCSSRGSRLECRMQGTSDPVSRRRLLQVVLGALVSSTVLLRQDANAATTTKVWGAAELDFWVYICS------ATGKFCPEMTKVEISPARKVDRELAEALHSIPRQVFVEMTGRKVQELDASVDSDRELVLSLFQKRVSFDPSDLTDQYSLDFDSYLVWKSLARILPSNEERRVFQRQVAKRMLEQLTRQGASAVFYNSVEEGPEKAFQGCSSLLALLKSTGFLEASNVEVGDFDVKYWKSDSPPTTLTVTIDKPVTLQANLQLGGEGTGFKPDVIENMLAVYLESCGML-VDWVSYFIDPTYRPNPDDYQPSQVLCQINV 351          
BLAST of NO07G03370 vs. NCBI_GenBank
Match: GAX23704.1 (hypothetical protein FisN_12Hh281 [Fistulifera solaris])

HSP 1 Score: 147.5 bits (371), Expect = 8.700e-32
Identity = 98/305 (32.13%), Postives = 157/305 (51.48%), Query Frame = 0
Query:  113 LFSPSAAYAARIKGAAELDAEAYLVDLLKGNPLTGGAEQSPLP-IRPARVLDKDFATFLD-------MTTLGLISKISGQS-------LEK-VNKEVSAFRQTVEPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPDLRARAVFVRDLGEAVLNGVIKGSPGIKSNDAQKDGLDGTIEGMKQILAYMQSKGFLK---------DSKINIEDYDRASWDDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISVEK 393
            L +P  A AAR  GAAELD E Y+ DL+ GN   G  + S LP + P R L   F   L+       + T  LI++I  +        LEK + ++V   R+     F  RAP+ S+ +T++  FD  +Y+ ++ AA ++P+   R +FVR++G ++   +     G+     + + L   I  + ++L +  S  F K         D  + ++D D  +W  G +++ L+++ E ATLG ++Q TGE   F PD V  T+ A  +     + +S  Y +D EYRPNPKDY P E L+Q ++ K
Sbjct:   55 LITPQNANAAR--GAAELDFEFYVRDLIGGNRPEGNVQASTLPTLAPPRTLSLFFEKILNKECSIECLATQQLIAQIQRREKKRETTFLEKEIQRQVQTIREGARKSFFSRAPWESETMTDQYFFDLTAYSFWKTAAVMLPNFADRDMFVRNVGRSIYTSL--RDEGLLKTKCRDESLSSCIPCVVEVLDFFVSTNFCKAYRLGEKVDDEYLFLDDIDNQAWSKGVSVDCLLSIFESATLGSSLQITGEQSRFIPDLVGPTIAAVWDPQSSVQWES--YFVDPEYRPNPKDYFPNEQLFQYTLAK 353          
BLAST of NO07G03370 vs. NCBI_GenBank
Match: GAX15023.1 (hypothetical protein FisN_12Lh281 [Fistulifera solaris])

HSP 1 Score: 142.9 bits (359), Expect = 2.100e-30
Identity = 98/305 (32.13%), Postives = 156/305 (51.15%), Query Frame = 0
Query:  113 LFSPSAAYAARIKGAAELDAEAYLVDLLKGNPLTGGAEQSPLPI-RPARVLDKDFATFLD-------MTTLGLISKISGQSLEK----VNKEVSAFRQTVEPG----FQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPDLRARAVFVRDLGEAVLNGVIKGSPGIKSNDAQKDGLDGTIEGMKQILAYMQSKGFLK---------DSKINIEDYDRASWDDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISVEK 393
            L +P  A AAR  GAAELD E Y+ D + GN   G  + S LPI  P R L   F   L+       + T  LI++I  +  ++    + KE+     T+  G    F  RAP+ S+ +T++  FD  +Y+ ++ AA L+P+   R +FVR+LG ++   +      +     +++ L  +I  +  +L    S  F K         D  + ++D D  +W +G +++ L+++ E ATLG ++Q TGE   F PD V  T+ A  +     + +S  Y +D EYRPNPKDY P E L+Q ++ K
Sbjct:   64 LAAPQNANAAR--GAAELDLEFYVRDFIGGNRPEGNVQASTLPILAPPRTLSPFFEKVLNKECSIDCLATQQLIAQIQRRDQKRETALLEKEIHRQAHTIGEGARKSFYSRAPWESETMTDQYFFDLTAYSFWKTAAVLLPNFADRDMFVRNLGRSIYQSL--RDERLLQTKCREESLSSSIPCVVAVLDCFVSTNFCKAYRLGEKIDDEYLFLDDIDNQAWSNGVSVDCLLSIFESATLGSSLQITGEQSRFIPDLVGPTIAAVWDTQSTVQWES--YFVDPEYRPNPKDYFPNEQLFQYTLAK 362          
BLAST of NO07G03370 vs. NCBI_GenBank
Match: XP_002181694.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC46908.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 131.7 bits (330), Expect = 4.900e-27
Identity = 97/313 (30.99%), Postives = 150/313 (47.92%), Query Frame = 0
Query:  116 PSAAYAARIKGAAELDAEAYLVDLLKGNPLTGGA--EQSPLPIRPARVL---------DKDFATFLDMTTLG---LISKISGQSLEKVNKEVS----AFRQTVEPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPDLRARAVFVRDLGEAVLNGVIKGSPGIKSNDAQKDGLDGTIEGMKQILAYMQSKGFLKDSKIN--------------------IEDYDRASWDDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISV 391
            PS A AAR  GAAELD E Y+   + GN   G      SP P  P  +          D   A+ + + TL    L S+ + Q   ++ + +     A+R+     F  +AP+ +  ++++  FD  SYA +R AA L+P+   R  F+R +G  +LN + +       + A +     TI  M+ +L    S GF +D +I                      +D D  +   G +++ LV+V+EPATLG ++Q TGE   F PD+V  TL A  E+  +  +  + + +D EYRPNPKDY P E L Q ++
Sbjct:   54 PSQAQAAR--GAAELDFEYYIRSAVSGNKREGNVLPSLSPTPPLPRTLKEPLLSLLLNDDCSASCVPIATLVQTILQSRSNTQDSNEIERNIQQRLRAYREKARKSFYAKAPWENALVSDQYYFDLTSYALWRTAADLLPNFVDRDRFIRGIGRDLLNNMQEKGLLPNKSTAIRGSATATIPSMQAVLQTFTSSGFCRDYRIGEAPVLDKKGKIAADAPPVILFDDLDDDALTSGASIDCLVSVLEPATLGASLQITGEQSRFGPDFVGATLSAVWEQADLTSSWEV-FFVDPEYRPNPKDYFPNEQLLQYTI 363          
BLAST of NO07G03370 vs. NCBI_GenBank
Match: EJK52026.1 (hypothetical protein THAOC_28744, partial [Thalassiosira oceanica])

HSP 1 Score: 127.1 bits (318), Expect = 1.200e-25
Identity = 93/297 (31.31%), Postives = 140/297 (47.14%), Query Frame = 0
Query:  105 ASAMAALFLFSPSAAYAARIKGAAELDAEAYLVDLLKGNPLTGG--AEQSPLPIRPARVLDKDFATFL------DMTTLGLISKISGQSLEKVNKEVSAFRQTVEPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPDLRARAVFVRDLGEAVLNGVIK----GSPGIKSNDAQKDGLDGTIEGMKQILAYMQSKGF------------LKDSKINIEDYDRASWDDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQYLLDTEYRPNPK 378
            A+++ A+ L  P  ++A  +KGAAE D E YL D   GN   G   A Q P P RP R L       L          +   S+IS   + ++ +E+  FR      FQ   P+  + + +E  FD   Y+ +RVA+  I D   R +FVR++G  +L+ VI+     S  I +  +   GL  T+  +  IL   +S GF             +   +  ++ D      G +++ LV+V++ +TLGG +Q  GEG  F+PD+V   L A  ER G        Y +D  YRPNPK
Sbjct:   27 AASIFAIALGIPLPSHA--VKGAAEYDLEYYLRDAFMGNNKEGNLPASQGP-PPRPPRQLGGPLLPLLLDDQLESCIVMQEFSRISNTPVTELGEEIKIFRNKAARAFQVSHPYVQESVRDEYFFDLTCYSIWRVASVRIQDFSKRDLFVRNVGRKLLDEVIRLGLIPSKNINTLQSGSGGLTDTLPAVIGILELFKSSGFCTKFQLGDKNDEFRTGMLAFDELDDEELRGGGSIDCLVSVLDASTLGGALQINGEGSRFYPDFVGPVLAAIWERAGRVSINYESYFVDPVYRPNPK 320          
BLAST of NO07G03370 vs. NCBI_GenBank
Match: CEM29174.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 112.5 bits (280), Expect = 3.100e-21
Identity = 89/320 (27.81%), Postives = 148/320 (46.25%), Query Frame = 0
Query:  103 LAASAMAALFLFSPSAAYAARIK--------GAAELDAEAYLVDLLKGNPLTGGAEQSPLPIRPARVLDKDFATFLDMTTLGLISKISGQSLEKVNKEVSAFRQTVEPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPD-------LRARAVF-------VRDLGEAVLNGVIKG--SPGIKSNDAQKDGLDGTIEGMKQILAYMQSKGFLKDSKINIEDYDRASWDDGYN-LELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISVEKGRQPL 398
            LAAS +A L L  P++A A  I         G+ ELD + YL +L+  N   G  +  PL    AR LD++    L    +G + ++SG S  ++  E+    +  +  F +R  +   D  ++  FD +S+  ++VAA  IP          AR  F       +RD+  A    +  G   P ++  DA+++GL   + G++++L  +Q  GF++  K+   +Y    W      L + V+V E A+L  +     E   F PD++   +  YL  C +      +  LD ++RPNP DY  +E LY   V++    L
Sbjct:  105 LAASVLAGLALL-PASASAGGIPWTGGEKGLGSGELDLQMYLYNLINRNRPMG--KTDPLDFVVARTLDENLVKALKEAAMGELQRVSGVSRRQLQSEMEELLRKRDKLFSQR--YLVTDERDQYAFDLWSWLLWKVAASHIPKGDANDPLGTARRSFQLSIGRRLRDIARARHEALYAGDSEPFMRVYDAEREGLGEAVSGIERMLRVLQKDGFIRSYKVATPEYMDEDWAARSGPLNIQVSVYESASLTASTLLNDERTNFRPDWIGTAVTTYLRDCNLPYNGYEELFLDEKWRPNPADYRVSEQLYSFIVDRSLDSL 419          
BLAST of NO07G03370 vs. NCBI_GenBank
Match: XP_002297458.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED86242.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 111.7 bits (278), Expect = 5.300e-21
Identity = 82/276 (29.71%), Postives = 131/276 (47.46%), Query Frame = 0
Query:  155 PIRPARVLDKDFATFLDMTTLGLISKISGQSLEKVNKEVSAFRQTVEPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIP-DLRARAVFVRDLGEAVLNGVI------KGSPGIKSNDAQKDG--LDGTIEGMKQILAYMQSKGFLKDSKI---------------NIEDYDRASWDDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERC--------------GVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISVEK 393
            P+ P  +LD +  T + +  L   SKI+      +++++ A R  V+P F  R P+  + +++E  FD   Y+ ++VA+  IP D   R  FVR++G  +L   I      K S    S   +K G  L  TI  + +IL   QS  +  + ++                ++D + +S   G ++  LV++ +P+ LGG +Q TGEG  F PD+V  TL A  ER               GV   +   Y +D  YRPNPKD+ P E  YQ ++ +
Sbjct:   26 PLLPL-LLDDELQTSIPIQEL---SKITNTPPSTLSEQIKAVRSKVQPAFSARYPWKDELVSDEYYFDLTCYSVWKVASIAIPNDYVKRDEFVRNIGRRILEEAISKEIISKQSIDALSKAGEKTGSTLTSTIPCIIEILNLFQSTNYCSNYRLGDKNDEVRTGPGVFDELDDEELSSSSTGGSVNCLVSIYDPSDLGGALQITGEGSRFAPDFVGPTLAAIWERVGGSSSGSGGKKRGEGVVAVQFESYFVDPVYRPNPKDFFPNERFYQYTIAR 297          
BLAST of NO07G03370 vs. NCBI_GenBank
Match: OEU21330.1 (hypothetical protein FRACYDRAFT_167495 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 81.3 bits (199), Expect = 7.700e-12
Identity = 50/145 (34.48%), Postives = 74/145 (51.03%), Query Frame = 0
Query:  260 GSPGIKSNDAQKDG-LDGTIEGMKQILAYMQSKGFLKDSKINIEDYDRASW-------DDGYNL----ELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLLAYLERCGVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISVEK 393
            G   + SN  + DG L  TI  + ++L   +  G+ K+ +I   D +  S        D+   +      LV++ EPATLG ++Q  GE   F PD+V  +L A  E+ G   +    + +D EYRPNPKDY P E L QI++ K
Sbjct:   15 GQQQMSSNKDKNDGALVSTIPAIVEVLELFKRSGYCKNFRIRSSDDNNDSGPIFDELDDESLTIYGTANCLVSIYEPATLGASLQINGENSRFAPDFVGTSLAAIWEKHGGIRSTWDVFFVDPEYRPNPKDYFPNEQLLQITLNK 159          
The following BLAST results are available for this feature:
BLAST of NO07G03370 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 12
Match NameE-valueIdentityDescription
EWM27057.11.100e-11970.51hypothetical protein Naga_100056g7 [Nannochloropsi... [more]
XP_005854086.15.500e-10368.79uracil-DNA glycosylase [Nannochloropsis gaditana C... [more]
XP_005829043.16.700e-3229.82hypothetical protein GUITHDRAFT_164226 [Guillardia... [more]
GAX23704.18.700e-3232.13hypothetical protein FisN_12Hh281 [Fistulifera sol... [more]
GAX15023.12.100e-3032.13hypothetical protein FisN_12Lh281 [Fistulifera sol... [more]
XP_002181694.14.900e-2730.99predicted protein [Phaeodactylum tricornutum CCAP ... [more]
EJK52026.11.200e-2531.31hypothetical protein THAOC_28744, partial [Thalass... [more]
CEM29174.13.100e-2127.81unnamed protein product [Vitrella brassicaformis C... [more]
XP_002297458.15.300e-2129.71predicted protein [Thalassiosira pseudonana CCMP13... [more]
OEU21330.17.700e-1234.48hypothetical protein FRACYDRAFT_167495 [Fragilario... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000519NSK000519Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03370.1NO07G03370.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100056g7gene3514Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03370.1NO07G03370.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03370 ID=NO07G03370|Name=NO07G03370|organism=Nannochloropsis oceanica|type=gene|length=1434bp
ATGGCACCTTCATCATGTCGATGGCATCGACTCCTTTTGCTTGCGGTTGC
GGTCACTAGTACTCTGTTTTCCTCTACCCTAGTTCCAACCCAGGCTTTCA
CACTGCTACGTCATCGGAGCTCGATGACGGTCAGCAAGTGGGAGGATTCC
GCTACCCCACTACGCTCACGGACCCCACCTACTCTTAAGAGGATCACCAT
TATGTCAAGTTTTAGTGGCTACAGTGATTCCGCCAACATGCCGCATCCGC
GAGCTGCTCCGACTCGAGGTCTTTTCCAACGACGCAGCCACCTGGGCACC
ACGTCCCTCGCTGCATCCGCGATGGCGGCCCTATTCCTTTTTTCCCCTTC
CGCCGCATACGCTGCTCGCATCAAGGGTGCGGCCGAGCTCGATGCCGAGG
CATATCTCGTCGATTTGTTGAAAGGAAATCCTCTCACTGGTGGAGCGGAG
CAGTCCCCCCTCCCTATCCGCCCTGCCCGAGTGCTAGACAAAGACTTTGC
CACCTTTCTGGACATGACTACCCTCGGATTGATAAGCAAGATCTCGGGGC
AATCTTTAGAAAAGGTGAACAAGGAAGTGAGTGCATTCCGACAGACTGTC
GAACCGGGTTTCCAACGACGGGCACCTTTCCCCTCAGACGACTTAACGAA
TGAACGGTGCTTCGATTGCTATTCTTACGCCGATTTCCGCGTGGCCGCCA
AGCTTATTCCTGATCTCCGGGCCCGAGCGGTTTTTGTCCGAGACCTAGGC
GAAGCAGTTTTGAATGGAGTCATAAAGGGATCACCAGGTATCAAGAGCAA
CGACGCTCAAAAAGATGGATTGGACGGAACTATAGAAGGAATGAAGCAAA
TTTTGGCCTACATGCAGAGCAAAGGCTTTCTCAAGGATTCTAAAATAAAT
ATCGAGGATTACGACAGGGCTTCTTGGGACGACGGGTATAATCTAGAGCT
GCTAGTGACGGTGGTGGAGCCAGCGACGTTGGGCGGTAATATTCAATTTA
CAGGGGAAGGGTTTTTGTTTCACCCGGACTATGTCGCCGAGACGCTGTTG
GCATACTTGGAGCGCTGTGGCGTGAAGGAAGCTAAGTCATTGCAGgtatg
gaaggcaaaaaggattggggcggggggggggagaggagaagattggaatt
tgtggaaagtggggaattgattgttggcagcattggactggagagatgca
tgacccttcctcatgacctccctcaacggctttccccatcgattgaggtg
gacgaactaaatagggttagacctcttagttactttataagactcattca
aatcccacttaacactctcactctttcacgaaaagTATCTGCTTGACACG
GAGTATCGGCCCAACCCTAAGGACTACAACCCTACTGAGGTACTCTACCA
GATAAGCGTGGAAAAGGGACGGCAGCCCCTATAA
back to top

protein sequence of NO07G03370.1

>NO07G03370.1-protein ID=NO07G03370.1-protein|Name=NO07G03370.1|organism=Nannochloropsis oceanica|type=polypeptide|length=398bp
MAPSSCRWHRLLLLAVAVTSTLFSSTLVPTQAFTLLRHRSSMTVSKWEDS
ATPLRSRTPPTLKRITIMSSFSGYSDSANMPHPRAAPTRGLFQRRSHLGT
TSLAASAMAALFLFSPSAAYAARIKGAAELDAEAYLVDLLKGNPLTGGAE
QSPLPIRPARVLDKDFATFLDMTTLGLISKISGQSLEKVNKEVSAFRQTV
EPGFQRRAPFPSDDLTNERCFDCYSYADFRVAAKLIPDLRARAVFVRDLG
EAVLNGVIKGSPGIKSNDAQKDGLDGTIEGMKQILAYMQSKGFLKDSKIN
IEDYDRASWDDGYNLELLVTVVEPATLGGNIQFTGEGFLFHPDYVAETLL
AYLERCGVKEAKSLQYLLDTEYRPNPKDYNPTEVLYQISVEKGRQPL*
back to top
Synonyms
Publications