NO07G03360, NO07G03360 (gene) Nannochloropsis oceanica

Overview
NameNO07G03360
Unique NameNO07G03360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1147
Alignment locationchr7:924794..925940 -

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Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:924794..925940 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of NO07G03360 vs. NCBI_GenBank
Match: XP_005718312.1 (unnamed protein product [Chondrus crispus] >CDF38419.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 122.1 bits (305), Expect = 2.700e-24
Identity = 89/242 (36.78%), Postives = 129/242 (53.31%), Query Frame = 0
Query:   30 VPTRETTKLTALRATPASTPEHDDRRSWFQQVAVSMLALSATNTFLRPSSASATRFDQETVLDPIYPNVTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCREGYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGK-DGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPAT---PIKIVEAGVL 268
            VPTR T   TA+ A P                 +++L+ +A+    + S  S T    +  L  I P   EP  T   FL+   + +   RV + LYG V P T ANF+AL + GY G++VYRV+   ++Q+GD+  K  G  GR++   G+  A E ++V+H++ G++SMV   +G+ DSRFF+N    D  + DGRY AFGRV   LE +    KVE K    V A+    ++IV AGVL
Sbjct:   54 VPTRRTILKTAILALP-----------------LALLSPAASEEGQKLS--SPTEEAAKEALQDIDPGSAEPKITDRVFLDLRLDGSVAERVTIGLYGDVTPATVANFKALLQSGYVGTSVYRVVPGLTVQLGDV-LKNGGRSGRAATADGS-LALENVRVRHTIPGLVSMVRGVDGRGDSRFFVNTRPGDSGYLDGRYCAFGRV---LENMAFWYKVERKANKGVFASRLPKVEIVAAGVL 271          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: XP_018190289.1 (hypothetical protein L228DRAFT_267043 [Xylona heveae TC161] >KZF24734.1 hypothetical protein L228DRAFT_267043 [Xylona heveae TC161])

HSP 1 Score: 122.1 bits (305), Expect = 2.700e-24
Identity = 70/172 (40.70%), Postives = 100/172 (58.14%), Query Frame = 0
Query:  101 PAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            P  T   + +    +   GRV + LYGK  PKTA NF AL       GY+GS+ +RV+KDF IQ GD  ++  G  G+S +  G  FA E  +++HS  G+LSM N  +    S+FFI      SW DGR+V FG V  G ++++++E V+ K P + P  P+KIV++G LE
Sbjct:   31 PKITHKVYFDIEHGDKPLGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSSFHRVIKDFMIQGGDF-TRGDGTGGKSIY--GQKFADENFKLKHSKPGLLSMANAGKDTNGSQFFITTVVT-SWLDGRHVVFGEVVEGFDIVQQIENVD-KKPGDKPTLPVKIVKSGELE 197          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: OLY78800.1 (Peptidyl-prolyl cis-trans isomerase B1 [Smittium mucronatum])

HSP 1 Score: 120.9 bits (302), Expect = 6.000e-24
Identity = 69/173 (39.88%), Postives = 102/173 (58.96%), Query Frame = 0
Query:  101 PAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLET 270
            P  T T + +    +T  GR+E+ LYG   PKTA NF+ L       GYKGS  +RV+K+F IQ GD  + K G  G+S +  GA F  E  +++H+  G+LSM N  +    S+FFI      SW DG++V FG VT+G+EV++++E  +V   S  PAT + I + G++E+
Sbjct:   29 PKITDTVYFDIKQGDTNLGRIEMGLYGGTVPKTAENFKQLATHAKGFGYKGSPFHRVIKNFMIQGGDF-TNKDGTGGKSIY--GAKFNDENFKLRHTKPGLLSMANAGKNTNGSQFFITTVVT-SWLDGKHVVFGEVTKGMEVVEKIENTKVTGGS-TPATEVIIADCGLVES 196          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: KXN71935.1 (putative cyclophilin [Conidiobolus coronatus NRRL 28638])

HSP 1 Score: 120.2 bits (300), Expect = 1.000e-23
Identity = 68/173 (39.31%), Postives = 103/173 (59.54%), Query Frame = 0
Query:  100 EPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCR----EGYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            EP  T   F +  + + + GR+ + L+G V PKT  NF  L +    EGYKGS  +RV+K+F IQ GD  +   G  G+S +  G  F  E  +++H+  G+LSM N  +    S+FFI   K  SW DG++V FG+V  G++V+ E+EKV+V   S+ P  P+ I+++G+LE
Sbjct:   27 EPKITHKVFFDIKNGDDEIGRITIGLFGDVVPKTVKNFYELAQKEKPEGYKGSGFHRVIKEFMIQGGDF-TNGDGTGGKSIY--GTKFNDENFKLKHTGPGLLSMANAGKNTNGSQFFITTVKT-SWLDGKHVVFGKVIDGMDVVTEIEKVKVN-YSSKPNKPVVIIDSGILE 194          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: KPM41655.1 (Peptidyl-prolyl cis-trans isomerase B [Neonectria ditissima])

HSP 1 Score: 119.8 bits (299), Expect = 1.300e-23
Identity = 69/172 (40.12%), Postives = 97/172 (56.40%), Query Frame = 0
Query:  101 PAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            P  T   + +   +    GR+   LYGK  PKTA NF AL       GY+GS  +RV+KDF IQ GD  +K  G  G+S +  GA F  E  +++H+ +G+LSM N  +    S+FFI      SW DGR+V FG V  G E+++++E+ E   P + P  PIKI ++G LE
Sbjct:   32 PKITHKVYFDIEQDGQALGRIVFGLYGKTVPKTAENFRALATGETGIGYEGSGFHRVIKDFMIQGGDF-TKGDGTGGKSIY--GAKFEDENFKLRHTKKGLLSMANAGKDTNGSQFFITTVVT-SWLDGRHVVFGEVIEGYEIVEKIERTET-APGDKPKKPIKIAKSGELE 198          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: XP_007710275.1 (hypothetical protein COCCADRAFT_90782 [Bipolaris zeicola 26-R-13] >XP_014554444.1 hypothetical protein COCVIDRAFT_104954 [Bipolaris victoriae FI3] >EUC35444.1 hypothetical protein COCCADRAFT_90782 [Bipolaris zeicola 26-R-13] >EUN24866.1 hypothetical protein COCVIDRAFT_104954 [Bipolaris victoriae FI3])

HSP 1 Score: 118.2 bits (295), Expect = 3.900e-23
Identity = 77/218 (35.32%), Postives = 113/218 (51.83%), Query Frame = 0
Query:   58 FQQVAVS-MLALSATNTFLRPSSASATRFDQETVLDPIYPNVTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDI--GSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            FQ+  +S +L LS T  F   ++ +A                  P  T   F +    + K GR+ + LYGK  PKT  NF AL       GY+GS  +RV+KDF IQ GD   G    G  G+S +  G  F  E  +++H+ +G+LSM N  +    S+FFI      SW DGR+V FG+V  G ++++++E V+ K P + P  P+KI ++G LE
Sbjct:    4 FQKAVISLLLILSITFVFFAQTTEAA----------------KSPKITHKVFFDIEIGDEKAGRIVMGLYGKTVPKTTENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTKGDGNLGTGGKSIY--GEKFPDENFKLKHTRKGLLSMANAGKDTNGSQFFITTAIT-SWLDGRHVVFGQVLEGYDIVEKIENVK-KAPGDKPIEPVKIAKSGELE 201          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: OTB16889.1 (hypothetical protein K445DRAFT_316403 [Daldinia sp. EC12])

HSP 1 Score: 117.9 bits (294), Expect = 5.100e-23
Identity = 69/172 (40.12%), Postives = 97/172 (56.40%), Query Frame = 0
Query:  101 PAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            P  T   + +    +   GR+ + LYGK  PKTA NF AL       GY+GS  +RV+K F IQ GD  +K  G  G+S +  G  F  E  +++HS EG+LSM N  +    S+FFI      SW DGR+V FG V  G++V+K++E V+ K P + P   +KI ++G LE
Sbjct:   32 PKITHKVYFDITHGDEPLGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKQFMIQGGDF-TKGDGTGGKSIY--GEKFPDENFKLKHSKEGLLSMANAGKDTNGSQFFITTVVT-SWLDGRHVVFGEVLEGMDVVKKIENVKTK-PGDKPEKEVKIAKSGELE 198          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: EFQ89343.1 (hypothetical protein PTT_14453 [Pyrenophora teres f. teres 0-1])

HSP 1 Score: 117.5 bits (293), Expect = 6.600e-23
Identity = 75/215 (34.88%), Postives = 110/215 (51.16%), Query Frame = 0
Query:   58 FQQVAVSMLALSATNTFLRPSSASATRFDQETVLDPIYPNVTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            FQ+  VS+L + +        SA AT+                P   +  F +    + K GR+ + LY K  PKTA NF AL       GY+GS  +RV+KDF IQ GD  +K  G  G+S +  G  F  E  +++H+ +G+LSM N  +    S+FFI      SW DGR+V FG V  G ++++++E V  K   + P  P+KI ++G LE
Sbjct:    4 FQRAVVSLLLILSITFLFFAQSAEATK---------------GPKIGNKVFFDITHGDEKLGRIVIGLYSKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDF-TKGDGTGGKSIY--GEKFPDENFKLKHTRKGLLSMANSGQDTNGSQFFITTAIT-SWLDGRHVVFGEVLEGYDIVEKIENVP-KGAGDKPNKPVKIAKSGELE 198          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: XP_007702100.1 (hypothetical protein COCSADRAFT_38732 [Bipolaris sorokiniana ND90Pr] >EMD61933.1 hypothetical protein COCSADRAFT_38732 [Bipolaris sorokiniana ND90Pr])

HSP 1 Score: 117.5 bits (293), Expect = 6.600e-23
Identity = 76/216 (35.19%), Postives = 114/216 (52.78%), Query Frame = 0
Query:   58 FQQVAVS-MLALSATNTFLRPSSASATRFDQETVLDPIYPNVTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            FQ+  +S +L LS T  F   ++ +A                  P  T+  F +    + K GRV + LYGK  PKT  NF AL       GY+GS  +RV+KDF IQ GD  +K  G  G+S +  G  F  E  +++H+ +G+LSM N  +    S+FFI      SW DGR+V FG+V  G ++++++E V+ K P + P   +KI ++G L+
Sbjct:    4 FQKAVISLLLILSITFVFFVQTTEAA----------------KSPKITNKVFFDIEHGDEKLGRVVIGLYGKTVPKTTENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDF-TKGDGTGGKSIY--GEKFPDENFKLKHTRKGLLSMANAGKDTNGSQFFITTAIT-SWLDGRHVVFGQVLEGYDIVEKIENVQ-KAPGDKPVKTVKIAKSGELK 198          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: XP_016211264.1 (peptidyl-prolyl cis-trans isomerase B [Verruconis gallopava] >KIW01395.1 peptidyl-prolyl cis-trans isomerase B [Verruconis gallopava])

HSP 1 Score: 117.5 bits (293), Expect = 6.600e-23
Identity = 68/172 (39.53%), Postives = 99/172 (57.56%), Query Frame = 0
Query:  101 PAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            P  T+  + +    +   GR+ + +YGK  PKTA NF  L       GY+GS  +RV+KDF IQ GD  +K  G  G+S +  GA F  E  +++HS +G+LSM N  +    S+FFI      SW DGR+V FG V  G +V+ +++ VE K P + P  P++IV++G LE
Sbjct:   33 PRITNKVYFDINHGDEHLGRIVMGVYGKTVPKTAENFVKLATGSEGFGYEGSTFHRVIKDFMIQGGDF-TKGDGTGGKSIY--GAKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTAVT-SWLDGRHVVFGEVLEGYDVVDKIQNVE-KEPGDRPKKPVRIVKSGELE 199          
The following BLAST results are available for this feature:
BLAST of NO07G03360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005718312.12.700e-2436.78unnamed protein product [Chondrus crispus] >CDF384... [more]
XP_018190289.12.700e-2440.70hypothetical protein L228DRAFT_267043 [Xylona heve... [more]
OLY78800.16.000e-2439.88Peptidyl-prolyl cis-trans isomerase B1 [Smittium m... [more]
KXN71935.11.000e-2339.31putative cyclophilin [Conidiobolus coronatus NRRL ... [more]
KPM41655.11.300e-2340.12Peptidyl-prolyl cis-trans isomerase B [Neonectria ... [more]
XP_007710275.13.900e-2335.32hypothetical protein COCCADRAFT_90782 [Bipolaris z... [more]
OTB16889.15.100e-2340.12hypothetical protein K445DRAFT_316403 [Daldinia sp... [more]
EFQ89343.16.600e-2334.88hypothetical protein PTT_14453 [Pyrenophora teres ... [more]
XP_007702100.16.600e-2335.19hypothetical protein COCSADRAFT_38732 [Bipolaris s... [more]
XP_016211264.16.600e-2339.53peptidyl-prolyl cis-trans isomerase B [Verruconis ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000520NSK000520Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03360.1NO07G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581129gene_2669Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100056g8gene3513Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03360.1NO07G03360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03360 ID=NO07G03360|Name=NO07G03360|organism=Nannochloropsis oceanica|type=gene|length=1147bp
AAACCACAGCCATGCCATCAATTCCACAACCTGGCCTCTTCCTCCTCGTG
CTCTTGGGGACCAGTCTCGTCGTCCAGGGTTTTCTGCCGCCCACAAGTGT
GCCAACAAGAGAGgtaagcagttaggcggggttggacctcagagtgcaac
cctttcacctgtccatcagaatggggggtgcgctgcacgacatgcattct
actttgcctctgtaagagtcagaactagccccaaaaggtgtgttcaatac
tatacagaccatgaccccgtcctcactcccctttctccccccctaacacc
acacaatatcaattctcagACCACCAAGCTCACCGCCCTGCGTGCCACCC
CGGCGTCGACACCTGAACATGATGACCGCCGTTCCTGGTTTCAACAGGTG
GCGGTGTCAATGTTAGCCCTGTCCGCCACCAACACATTTCTTCGTCCGTC
TTCTGCCAGTGCGACCCGCTTTGACCAAGAAACGGTGCTCGACCCTATCT
ATCCCAACGTCACGGAGCCCGCCTTCACGTCTACCTGTTTCCTGGAATTT
GCCTCGGAGAACACCAAGTTTGGGAGAGTAGAGGTGTCACTTTATGGGAA
AGTATGTCCCAAAACAGCAGCTAATTTTGAGGCCTTGTGTCGGGAGGGGT
ACAAGGGGAGCAATGTCTATCGGGTGCTCAAAGATTTCTCAATTCAAATG
GGCGATATTGGAAGTAAGAAACGAGGGGTCATGGGTCGGTCTAGTTTTGA
GGGAGGGGCGCCTTTCGCGAAAGAAACGATGCAGGTGCAGCATTCATTGG
AAGGGATGCTCTCAATGGTGAATGACAGAGAAGGTAAAGTGGACTCGAGA
TTTTTCATCAACCTTGGGAAGGACGGTTCGTGGGCGGACGGACGGTATGT
GGCGTTTGGAAGGGTGACGAGGGGTTTGGAAGTCTTGAAGGAGCTGGAAA
AGGTGGAGGTGAAGCCACCCAGTAACGTCCCGGCGACTCCGATAAAGATT
GTGGAGGCCGGCGTGCTGGAGACCCGGACGAGGTAGATTAGAAATTCAAG
GAGGTAAGATCGACACTTAATTCGTCGTCAACTAGTCAGGAATCGGCGAC
GAAAAAGAGTAAAATGAAAGGAAGAGACCCAAGCAGCCAGAATTCAA
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protein sequence of NO07G03360.1

>NO07G03360.1-protein ID=NO07G03360.1-protein|Name=NO07G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MPSIPQPGLFLLVLLGTSLVVQGFLPPTSVPTRETTKLTALRATPASTPE
HDDRRSWFQQVAVSMLALSATNTFLRPSSASATRFDQETVLDPIYPNVTE
PAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCREGYKGSNV
YRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSM
VNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKP
PSNVPATPIKIVEAGVLETRTR*
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Synonyms
Publications