NO07G03360, NO07G03360 (gene) Nannochloropsis oceanica

Overview
NameNO07G03360
Unique NameNO07G03360
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1147
Alignment locationchr7:924794..925940 -

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Properties
Property NameValue
DescriptionPeptidyl-prolyl cis-trans isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:924794..925940 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0000413protein peptidyl-prolyl isomerization
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR029000Cyclophilin-like_dom
IPR024936Cyclophilin-type_PPIase
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of NO07G03360 vs. NCBI_GenBank
Match: XP_005854089.1 (peptidyl-prolyl cis-trans isomerase b precursor [Nannochloropsis gaditana CCMP526] >EKU22274.1 peptidyl-prolyl cis-trans isomerase b precursor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 316.2 bits (809), Expect = 9.700e-83
Identity = 151/183 (82.51%), Postives = 164/183 (89.62%), Query Frame = 0
Query:   85 FDQETVLDPIYPNVTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCREGYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVL 268
            +DQ  V DPI+PN+TEPA TS CFLEFASE T FGR+EVSLYGKVCP+TAANFEALCR+GYKGSNVYRVLKDFSIQMGDIGSKKRG  GRSS +GG P  KET++VQHSLEGMLSMVND+ G VDSRFFIN+GKDGSWADGRYVAFGRVT+GLEVLKE+EKVEVKPPSNVP  PIKI  AGVL
Sbjct:   52 YDQVEVSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 234          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: EWM27037.1 (peptidyl-prolyl cis-trans isomerase b precursor [Nannochloropsis gaditana])

HSP 1 Score: 314.3 bits (804), Expect = 3.700e-82
Identity = 167/262 (63.74%), Postives = 187/262 (71.37%), Query Frame = 0
Query:    6 QPGLFLLVLLGTSLVVQGFLPPTSVPTRETTKLTALRATPASTPEHDDRRSWFQQVAVSMLALSATNTFLRPSSASATRFDQETVLDPIYPNVTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCREGYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVL 268
            Q  L + +LL  SLV+QGFL     P +   +  +L A PA                                   +  +DQ  V DPI+PN+TEPA TS CFLEFASE T FGR+EVSLYGKVCP+TAANFEALCR+GYKGSNVYRVLKDFSIQMGDIGSKKRG  GRSS +GG P  KET++VQHSLEGMLSMVND+ G VDSRFFIN+GKDGSWADGRYVAFGRVT+GLEVLKE+EKVEVKPPSNVP  PIKI  AGVL
Sbjct:   45 QSCLCITMLLMASLVIQGFLGTVQGPRQR--RDISLSAAPA-----XXXXXXXXXXXXXXXXXXXXXXXXXXXPTLSAPYDQVEVSDPIFPNITEPAVTSVCFLEFASEKTNFGRIEVSLYGKVCPQTAANFEALCRDGYKGSNVYRVLKDFSIQMGDIGSKKRGATGRSSLKGGTPLPKETLRVQHSLEGMLSMVNDKSGTVDSRFFINMGKDGSWADGRYVAFGRVTKGLEVLKEVEKVEVKPPSNVPTLPIKITAAGVL 299          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: CEM10275.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 149.1 bits (375), Expect = 2.100e-32
Identity = 79/184 (42.93%), Postives = 116/184 (63.04%), Query Frame = 0
Query:   94 IYPNVTEPAFTSTCFLEFASENTK-------FGRVEVSLYGKVCPKTAANFEALCREG-YKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSL--EGMLSMVND-REGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGV 267
            ++ N T P  T+ C+LE A             GR+ +S+YG++ PKTA NF  LC  G Y+ S +YR++KD+++QMGDIG+   G  GRS+   G+P  KE  +++HS+   G++SMV D +  KVDSRFFI L  D  WAD R+VAFGRV  G  ++++L K +V+P +N P   + I ++GV
Sbjct:  118 VFLNETTPKITARCWLEIAEAPKTADGAPLLLGRLNISVYGEIVPKTADNFIQLCSSGSYQNSTIYRIVKDYALQMGDIGAAGTGKSGRSAQPDGSPLPKENTRIRHSVPGHGVVSMVRDLKTKKVDSRFFITLVDDAGWADSRFVAFGRVQGGEGLMEQLGKEKVEPVTNRPVRKLIIADSGV 301          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: OEU15764.1 (cyclophilin-like protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 143.3 bits (360), Expect = 1.100e-30
Identity = 75/166 (45.18%), Postives = 99/166 (59.64%), Query Frame = 0
Query:  101 PAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALC-REGYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAG 266
            P  T   +L+      + GR+ + LYG + PKTA NFE LC    Y G+N YRV+ D +IQ G IG    G  G+SSF+ G  F  +   ++HS  G+LSMV    G VDSRFFIN  +D  WAD RY AFG V  G+ ++K++EKV V PP N P   +KI+ +G
Sbjct:    3 PKITKRVYLDVEFGKNEKGRLVIGLYGDIMPKTAENFEKLCASNSYAGTNFYRVISDTTIQGGAIGDPS-GKTGKSSFDDGKSFEPDNFNIKHSKSGILSMVKG-IGGVDSRFFINTQEDAGWADDRYAAFGIVEEGMYLVKQIEKVPVSPPKNSPVNEVKILASG 166          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: CBJ26729.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 132.5 bits (332), Expect = 2.000e-27
Identity = 74/187 (39.57%), Postives = 108/187 (57.75%), Query Frame = 0
Query:   87 QETVLDPIYPNVTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEAL------CREGYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVL 268
            ++ V D I     EP  T   F++    ++  GR+ ++LYGKV P T  NF AL          Y+G+  YRVL   +IQMG IGS+  G  G SS   G    +E   ++H  EG+LSMV + + + DSRFFI++  D  WAD RYVAFGR+  G++V+  +E+V+V+  +N P  P+ I + G+L
Sbjct:   81 EKMVADKIAAGWQEPEVTQRAFMDITIGDSPSGRLVINLYGKVVPDTVKNFVALITGKNAAGVSYQGTEAYRVLDGLNIQMGAIGSRS-GKSGVSS--TGENIPQENFDIKHMKEGLLSMVRNADAQGDSRFFISIKDDAGWADDRYVAFGRIAEGMDVVHLIERVKVEGGTNKPKKPVVIEKCGML 264          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: KOO28782.1 (peptidyl-prolyl cis-trans isomerase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 131.7 bits (330), Expect = 3.400e-27
Identity = 71/178 (39.89%), Postives = 102/178 (57.30%), Query Frame = 0
Query:   98 VTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCR----EGYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVN----DREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVL 268
            VT P  TS C+L+ A + +  GR+ + LYG+V P+ A NF ALC      GY+GS+ +++L    +Q G+       V G SS  G  PFA +   ++H++ GM+SMVN       G+ D+RF I L  D  + DGRY AFGRV+ G+ V++ +E+V VK    VP   + I  AG L
Sbjct:    2 VTPPKVTSRCYLDVAIDGSPAGRIAIDLYGEVAPRAAENFRALCTGEKGYGYQGSSFFKILSGLVMQAGE-------VPGHSSIYGDQPFAHDNYLIKHNVAGMVSMVNTGVGGNSGQSDTRFLIQLPDDAGFLDGRYEAFGRVSAGMNVVRMIEQVPVKTTRQVPVQKVSIEAAGEL 172          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: EJK73815.1 (hypothetical protein THAOC_04545 [Thalassiosira oceanica])

HSP 1 Score: 128.6 bits (322), Expect = 2.900e-26
Identity = 71/185 (38.38%), Postives = 100/185 (54.05%), Query Frame = 0
Query:   94 IYPNVTEPAFTSTCFLEFASENTKF-GRVEVSLYGKVCPKTAANFEALCR------EGYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTR---GLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            I P+V  P  TS  +L+      K   R+ + L+G+  P+ A NF +LC         Y G+  YR L   SIQ G IGS   G  G SS E GA F  +   ++HS +G++S V +  G++DSRFF+    D  WADGRY AFG V     G+++++ +  V+V+ P N P  PI IV  G L+
Sbjct:   22 IDPSVAPPRVTSKVYLDVKFAKYKEPKRLVIGLFGEAMPRAAENFASLCAGDNAGGRSYAGTRFYRALSGNSIQGGAIGSPNTGRSGLSSLEDGATFPPDNFDIKHSTQGLVSAVRNPNGEIDSRFFVQTEDDAGWADGRYAAFGIVLEEGGGMDLVRRISNVDVQTPQNSPKDPITIVACGRLD 206          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: XP_002292448.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED90423.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 128.3 bits (321), Expect = 3.800e-26
Identity = 71/178 (39.89%), Postives = 99/178 (55.62%), Query Frame = 0
Query:  101 PAFTSTCFLEFASENTKF-GRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDIGS-KKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRV-----TRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVL 268
            P  T   +L+      K   R+ + L+G+   KTA NF+ LC       Y G++ YRV+   +IQ G IGS    G  G S+FE GAPF  +   ++H  +G++S V +  G +DSRFFI    D  WAD RY AFG V     T G+E++K+L ++EVK P N P  P+ IV  G+L
Sbjct:    1 PKITQKVYLDIKLPTNKTPKRLVIGLFGEAMHKTAENFQTLCTNTEGPSYAGTSFYRVISGTTIQGGAIGSNSSSGKSGTSAFENGAPFTPDNYNIKHRTKGLVSAVRNANGTIDSRFFIQTEDDAGWADDRYAAFGIVLEEEGTGGMELVKKLSRLEVKAPQNSPKDPVLIVGCGLL 178          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: EMD90907.1 (hypothetical protein COCHEDRAFT_1021706 [Bipolaris maydis C5])

HSP 1 Score: 123.2 bits (308), Expect = 1.200e-24
Identity = 78/216 (36.11%), Postives = 114/216 (52.78%), Query Frame = 0
Query:   58 FQQVAVS-MLALSATNTFLRPSSASATRFDQETVLDPIYPNVTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            FQ+  +S +L LS T  F   S+ +                V  P  TS  F +   +    GR+ + LYGK  PKT  NF AL       GY+GS  +RV+KDF IQ GD  +K  G  G+S +  G  F  E  +++H+ +G+LSM N  +    S+FFI      SW DG++V FG+V  G +V++++E V+ K P + P  P+KI ++G LE
Sbjct:    4 FQKAVISLLLILSITFVFFAQSTEA----------------VKSPKITSKVFFDIEQDGESLGRIVIGLYGKTVPKTTENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDF-TKGDGTGGKSIY--GEKFPDENFKLKHTRKGLLSMANAGKDTNGSQFFITTAIT-SWLDGKHVVFGQVLEGYDVVEKIENVQ-KAPGDRPVKPVKIAKSGELE 198          
BLAST of NO07G03360 vs. NCBI_GenBank
Match: XP_014079919.1 (hypothetical protein COCC4DRAFT_80920 [Bipolaris maydis ATCC 48331] >ENI06010.1 hypothetical protein COCC4DRAFT_80920 [Bipolaris maydis ATCC 48331])

HSP 1 Score: 123.2 bits (308), Expect = 1.200e-24
Identity = 78/216 (36.11%), Postives = 114/216 (52.78%), Query Frame = 0
Query:   58 FQQVAVS-MLALSATNTFLRPSSASATRFDQETVLDPIYPNVTEPAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCRE----GYKGSNVYRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSMVNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKPPSNVPATPIKIVEAGVLE 269
            FQ+  +S +L LS T  F   S+ +                V  P  TS  F +   +    GR+ + LYGK  PKT  NF AL       GY+GS  +RV+KDF IQ GD  +K  G  G+S +  G  F  E  +++H+ +G+LSM N  +    S+FFI      SW DG++V FG+V  G +V++++E V+ K P + P  P+KI ++G LE
Sbjct:    4 FQKAVISLLLILSITFVFFAQSTEA----------------VKSPKITSKVFFDIEQDGESLGRIVIGLYGKTVPKTTENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDF-TKGDGTGGKSIY--GEKFPDENFKLKHTRKGLLSMANAGKDTNGSQFFITTAIT-SWLDGKHVVFGQVLEGYDVVEKIENVQ-KAPGDRPVKPVKIAKSGELE 198          
The following BLAST results are available for this feature:
BLAST of NO07G03360 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854089.19.700e-8382.51peptidyl-prolyl cis-trans isomerase b precursor [N... [more]
EWM27037.13.700e-8263.74peptidyl-prolyl cis-trans isomerase b precursor [N... [more]
CEM10275.12.100e-3242.93unnamed protein product [Vitrella brassicaformis C... [more]
OEU15764.11.100e-3045.18cyclophilin-like protein, partial [Fragilariopsis ... [more]
CBJ26729.12.000e-2739.57conserved unknown protein [Ectocarpus siliculosus][more]
KOO28782.13.400e-2739.89peptidyl-prolyl cis-trans isomerase [Chrysochromul... [more]
EJK73815.12.900e-2638.38hypothetical protein THAOC_04545 [Thalassiosira oc... [more]
XP_002292448.13.800e-2639.89predicted protein, partial [Thalassiosira pseudona... [more]
EMD90907.11.200e-2436.11hypothetical protein COCHEDRAFT_1021706 [Bipolaris... [more]
XP_014079919.11.200e-2436.11hypothetical protein COCC4DRAFT_80920 [Bipolaris m... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000520NSK000520Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03360.1NO07G03360.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581129gene_2669Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100056g8gene3513Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03360.1NO07G03360.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03360 ID=NO07G03360|Name=NO07G03360|organism=Nannochloropsis oceanica|type=gene|length=1147bp
AAACCACAGCCATGCCATCAATTCCACAACCTGGCCTCTTCCTCCTCGTG
CTCTTGGGGACCAGTCTCGTCGTCCAGGGTTTTCTGCCGCCCACAAGTGT
GCCAACAAGAGAGgtaagcagttaggcggggttggacctcagagtgcaac
cctttcacctgtccatcagaatggggggtgcgctgcacgacatgcattct
actttgcctctgtaagagtcagaactagccccaaaaggtgtgttcaatac
tatacagaccatgaccccgtcctcactcccctttctccccccctaacacc
acacaatatcaattctcagACCACCAAGCTCACCGCCCTGCGTGCCACCC
CGGCGTCGACACCTGAACATGATGACCGCCGTTCCTGGTTTCAACAGGTG
GCGGTGTCAATGTTAGCCCTGTCCGCCACCAACACATTTCTTCGTCCGTC
TTCTGCCAGTGCGACCCGCTTTGACCAAGAAACGGTGCTCGACCCTATCT
ATCCCAACGTCACGGAGCCCGCCTTCACGTCTACCTGTTTCCTGGAATTT
GCCTCGGAGAACACCAAGTTTGGGAGAGTAGAGGTGTCACTTTATGGGAA
AGTATGTCCCAAAACAGCAGCTAATTTTGAGGCCTTGTGTCGGGAGGGGT
ACAAGGGGAGCAATGTCTATCGGGTGCTCAAAGATTTCTCAATTCAAATG
GGCGATATTGGAAGTAAGAAACGAGGGGTCATGGGTCGGTCTAGTTTTGA
GGGAGGGGCGCCTTTCGCGAAAGAAACGATGCAGGTGCAGCATTCATTGG
AAGGGATGCTCTCAATGGTGAATGACAGAGAAGGTAAAGTGGACTCGAGA
TTTTTCATCAACCTTGGGAAGGACGGTTCGTGGGCGGACGGACGGTATGT
GGCGTTTGGAAGGGTGACGAGGGGTTTGGAAGTCTTGAAGGAGCTGGAAA
AGGTGGAGGTGAAGCCACCCAGTAACGTCCCGGCGACTCCGATAAAGATT
GTGGAGGCCGGCGTGCTGGAGACCCGGACGAGGTAGATTAGAAATTCAAG
GAGGTAAGATCGACACTTAATTCGTCGTCAACTAGTCAGGAATCGGCGAC
GAAAAAGAGTAAAATGAAAGGAAGAGACCCAAGCAGCCAGAATTCAA
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protein sequence of NO07G03360.1

>NO07G03360.1-protein ID=NO07G03360.1-protein|Name=NO07G03360.1|organism=Nannochloropsis oceanica|type=polypeptide|length=273bp
MPSIPQPGLFLLVLLGTSLVVQGFLPPTSVPTRETTKLTALRATPASTPE
HDDRRSWFQQVAVSMLALSATNTFLRPSSASATRFDQETVLDPIYPNVTE
PAFTSTCFLEFASENTKFGRVEVSLYGKVCPKTAANFEALCREGYKGSNV
YRVLKDFSIQMGDIGSKKRGVMGRSSFEGGAPFAKETMQVQHSLEGMLSM
VNDREGKVDSRFFINLGKDGSWADGRYVAFGRVTRGLEVLKELEKVEVKP
PSNVPATPIKIVEAGVLETRTR*
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Synonyms
Publications