NO07G03350, NO07G03350 (gene) Nannochloropsis oceanica

Overview
NameNO07G03350
Unique NameNO07G03350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1760
Alignment locationchr7:922651..924410 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:922651..924410 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Homology
The following BLAST results are available for this feature:
BLAST of NO07G03350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000522NSK000522Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03350.1NO07G03350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03350.1NO07G03350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03350 ID=NO07G03350|Name=NO07G03350|organism=Nannochloropsis oceanica|type=gene|length=1760bp
GGGAGAGGCAGCGAGGCGCCTTCCACACCACTTTCCCCAACAGCCAGATC
GCGAGTCTCTCAAATGCTCTACAACCACAATACCGTACCACTCCCTGACC
ACCCACGCCACCCTGTACCTTGAGATTTAGCATACTACGATCATGAGGTA
ACACGCGGGGCCGGTATCTGCGTTGTTTTGTGCGTGCTGTCGCACTTTTC
TAGCTGGCGTCATGCCTCAAGCTATGGCATTCCGAAAGCATAGATTTGAC
GTTGCCTGCCCTGCAAGTTTATCCTGGCACCCTTCTCAACGACACCACCA
CACTTGACAGGGGAGAAGATTGTTCCTGGCTCAAATTTTGGGTAGCGCCT
GAGCGCGGCACGGTGGAGGACAACAGGACCAGGTATAAGTAAGCTGACGA
CAGCGGAATCGAGGAGACCGGCCGGGAACATCTAAGCAAGAAGGGCGTGT
TATCTAGCACCAAGCACTGGCACCACTAGCAGCACCAGCAGCACCAGCGA
CAGTCCTAGCTGAAGGAGTAATAGCAACAGCTCGAGGAGATGACGTCCCT
TGCTTCGTCTCACACCTCGGACAAGGACGACGAAAGCCAGGGCTCCTTTT
CCGGCTCTGATGATGGGTCACGAAATGATCTTATGCCAATGTCAGGAGGC
AAGGGGGCCGGCGGTGGTGGTGGTGGAGGGCGAGGGGGAAGGGCGGGCAG
TGCCAAAAAAGGTGGTGGTGGTGGGGATGATAAACGGAAGAAGAAGTTGG
AACTCAATCGCATCGCATCGCGTGAAAGCCGTAAGAGGAAAAAGCGGCGC
TTGGAGGAATTGCAGAGATCTGTCTTGTATCTAACGCACGAGAATCATCA
GCTTCGTGAACAGAACGAACTCTTGAGACAGATGTTGGTCGGGCGTATGC
CAGGAGGAGCAGGGCCAGGAGGGGGTTCAGCTCCAGCAGGAGGACCTCAA
CAGCTACCGCAACAGCAGCCGCCTCAGCAACAGCTTCATCAGCCGTCACA
ATCGATTTCAGGACAGCTGCAGCAGCACATACCGCACCACCACCAGCAGT
TGCAGCCGCAGCAGGGAGGAGGTGGACCTGGAGGGGGGTTCATGATGCAG
GTGGCAGCAGCAGCGGCGCAGCCGCAGCATCAGCAGCACCACATGATGGG
AGGAGGGGGAGCCATGTCTCGAGCTGGAGCTGGGGCGATGGGAGCAGCGG
CGCAGCTCCAGCAACAGCAACAGCAACAGCAGTACGGGGGGGTACTTGGA
GGTGGAGAGGGAAGAGGCGGAGGTGTGAATGGGTATCGTGGTGGGAAGGA
CGAGGGATTGGACGAAGAAGAGGATGAGGACGAGGACGAGCTGGATGAGG
ATGAATCATAGATATACAGGATAAGGGGAGGGAGGAGAGGAAGGCATAAC
GCGAGACAGGGACTGACGGGTAGAGGTATAAAACTCACATGAAGCAGGAG
GTTCCACCTCCTACCATTGCTGGCTTTTCGGCTGCTGCAGTGGTGGATGG
TGATGGAGGAGTCCCCAAAACCTTAAAGCAATGCAAATCGAAATGATATC
CAAGCGAGAGAGACCAAGTGAAAAACAAGGGTCGGTAAAGAAAGAGGCTG
TATGCACGCACATACACGCGCGTGTGGTCGTGTGGGCTACCCACAAAATA
TGGGATGGAGGAGAAGAAGAGAGTGACGAAGGGGGGACAAACAGGAGGGA
ATCAATCAAATTATTTTTGGATATTTGTATAGAGGGAGGTGACAGGGAGG
GAACAAGGGA
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protein sequence of NO07G03350.1

>NO07G03350.1-protein ID=NO07G03350.1-protein|Name=NO07G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MTSLASSHTSDKDDESQGSFSGSDDGSRNDLMPMSGGKGAGGGGGGGRGG
RAGSAKKGGGGGDDKRKKKLELNRIASRESRKRKKRRLEELQRSVLYLTH
ENHQLREQNELLRQMLVGRMPGGAGPGGGSAPAGGPQQLPQQQPPQQQLH
QPSQSISGQLQQHIPHHHQQLQPQQGGGGPGGGFMMQVAAAAAQPQHQQH
HMMGGGGAMSRAGAGAMGAAAQLQQQQQQQQYGGVLGGGEGRGGGVNGYR
GGKDEGLDEEEDEDEDELDEDES*
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Synonyms
Publications