NO07G03340, NO07G03340 (gene) Nannochloropsis oceanica

Overview
NameNO07G03340
Unique NameNO07G03340
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2052
Alignment locationchr7:920583..922634 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:920583..922634 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO07G03340 vs. NCBI_GenBank
Match: EWM27050.1 (hypothetical protein Naga_100056g10 [Nannochloropsis gaditana])

HSP 1 Score: 544.7 bits (1402), Expect = 3.400e-151
Identity = 273/403 (67.74%), Postives = 318/403 (78.91%), Query Frame = 0 
Query:   87 SRPSGNVLIRAVLCALLASSTAAFVIRPPSPPTASCSPLWKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFEKDNGGWKDVNFLPQKTADVRQGSFRLPRLTDFLTTFPPASYLYKWTRLMKAPVYEGLKHDDYFEACRQLGVPPDIDEGRLAAKVDALLVKYEKDRKKKIMIDWSSDKIMEHRVYMQLEGKAYKPVGEPVDMRLLDERYLDISPKDALDLMTSLDLSPADVKGQPNALAKVVNSPLLRALQITRLVRMARYVWMAFGESLEGPNLRRMLWPGSVGLVLALWFGNAVDFVPLKYFITIMANTGPIYNRGEAKLANRKERRPIKWKKLLLAFAFMGMSTGGAWAGGKAWCALKYPTGELSEGLFIPLVANIVTYVMSSCFFIRESTLAGGRA 490
            SR S  +LIR  LCA+LASS++A+ I  PS  + S SPLW+                              AFE D+ GWKDV F+PQKTAD++ G+FRLPRLTDF  T PPAS  +K  R  K P YE L+HDDY EACR LGVPPDI+E +LAAKV+ALLVKYEKDRKK+IMIDW+ DKI EHR+++QL+G+A KP G  +DMRLLDER+L+ISPKD LDLMT+LDLSPAD+KG+P  L  VVN+PLLRALQITRLV+M R+V MAFGESLE PNLRR+LWPG+VGL LALWFGNAVDFVPLKY IT +A+ GPIYNRGEAKLANR+ERRPIKW KLLL+ AFM +ST GAWAGG+AWCALKYPTG+L E +F+PLVAN+VTYVMSSCFFIRESTLAGGRA
Sbjct:   10 SRQSHGILIRVFLCAILASSSSAYTINSPS-RSVSASPLWR-------PLRESKPPRASTRLHSAASSGPGAFENDDSGWKDVTFIPQKTADLKPGAFRLPRLTDFFATLPPASRWHKLLR-RKKPAYESLRHDDYVEACRSLGVPPDIEEDKLAAKVEALLVKYEKDRKKRIMIDWARDKIFEHRIFLQLDGQAVKPPG-GMDMRLLDERFLEISPKDTLDLMTALDLSPADLKGKPGPLTAVVNNPLLRALQITRLVKMGRFVLMAFGESLEAPNLRRLLWPGTVGLALALWFGNAVDFVPLKYVITTVAHAGPIYNRGEAKLANRRERRPIKWTKLLLSLAFMALSTAGAWAGGRAWCALKYPTGDLPENIFVPLVANLVTYVMSSCFFIRESTLAGGRA 402
The following BLAST results are available for this feature:
BLAST of NO07G03340 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27050.13.400e-15167.74hypothetical protein Naga_100056g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000524NSK000524Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03340.1NO07G03340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637553gene_2668Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100056g10gene3511Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03340.1NO07G03340.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03340 ID=NO07G03340|Name=NO07G03340|organism=Nannochloropsis oceanica|type=gene|length=2052bp
AGAAGAAGCTCCAGACGTCCTCCTGCCCGTTCTTTTGGGCCAGACAATCC
ATGTACATTCCTCGTCATGCACACACTCCCAAGGAAATTATTTTAATGTA
CTCTGGTGACCGCACGAATGCAGCTAGCATTCCCTCCCATGTTTGTCCTT
GCTTGCAAACCAGCGGCCTCAAAACAACAAATATCACCTCACGTATCCGG
TTTGACCTCAACTCACACTTGCTCCTCAACACAGTGCGCCAAGACCATAG
CTACGGTTGCTCGCCCGCTGAGGAGAAGAAGACCCGCATGAGAAGAACTT
CTAGCACGTCGCGGCCGTCTGGGAACGTCCTGATAAGAGCCGTCTTGTGC
GCACTTTTGGCCTCGTCCACCGCAGgtatgtacgtacaccctctacctga
tattgcccttgtccgtttatgtgatttgatcatataagtcatggattcat
agagtgttatttggtttcatgtctgtcctcatgccttgcatgtgtgctcc
gttggccgtgtccttccatttacggtgtctggccggaagagggcggagga
agctccgcgaaatcgttgctttccacggccgctcaggacggacgcgcccc
ttacattctaaaacttgcgttgactcccatccttcgcttatgctcattct
cactcgtattcttcgctcatgctcattcctactcgtatctgccttgcccc
cttctttcaaaattacagCCTTTGTCATCCGACCACCTTCCCCCCCCACC
GCCTCGTGCTCCCCTCTCTGGAAGCGCCAGCAGCAACAGCCGCACCCCTC
CTCCTCATTATCGCCTTCCCCCACCAGCACGCAACTCGCGTCTGCTGCGG
CCTCTGGTCCTGGGGCTTTTGAAAAAGACAACGGCGGGTGGAAAGATGTC
AATTTTCTCCCCCAAAAAACAGCAGATGTCCGACAGGGCTCCTTCCGATT
GCCACGCCTGACTGATTTCTTGACTACCTTTCCGCCAGCATCTTATTTAT
ACAAGTGGACGAGGTTAATGAAGGCGCCTGTGTATGAGGGATTGAAACAC
GACGATTATTTTGAGGCTTGTCGTCAGTTGGGCGTCCCTCCTGATATCGA
CGAGGGGAGACTAGCAGCAAAAGTGGACGCTTTGCTGGTGAAATATGAAA
AGGACCGTAAGAAGAAGATTATGATTGATTGGTCCTCGGATAAGATCATG
GAGCATCGCGTTTACATGCAGTTGGAGGGGAAGGCCTACAAGCCAGTGGG
GGAGCCGGTGGACATGAGGCTGCTTGATGAGAGGTACCTAGACATCTCGC
CCAAGGACGCACTGGATCTGATGACCTCCCTTGATCTGTCCCCGGCGGAC
GTCAAGGGACAACCGAATGCTCTGGCCAAGGTCGTTAACAGTCCTTTGTT
GCGGGCGCTGCAGATTACGAGGCTGGTGCGCATGGCCCGTTATGTATGGA
TGGCATTTGGTGAGAGCTTGGAAGGACCGAACCTGCGAAGGATGCTCTGG
CCGGGGAGTGTGGGCTTGGTGTTGGCATTGTGGTTTGGGAATGCGGTGGA
TTTTGTGCCCTTGAAGTATTTCATCACCATTATGGCGAACACGGGCCCGA
TCTACAACAGGGGCGAGGCAAAGCTGGCGAACCGGAAGGAAAGGCGGCCG
ATCAAGTGGAAGAAGTTGTTGTTGGCGTTTGCTTTTATGGGCATGTCGAC
GGGGGGGGCATGGGCGGGGGGAAAGGCGTGGTGTGCGCTCAAGTATCCTA
CAGGGGAGCTGTCCGAGGGATTATTTATCCCCTTGGTGGCCAATATCGTG
ACGTATGTGATGAGTTCTTGCTTCTTCATTCGAGAGAGCACCCTGGCAGG
CGGACGGGCGGCAAGAGATGCGGAGGGTGGGGAGGGAGGGAAAGGGGGGA
AGGGGGGGGAAGGAGGCCAGCATAAAATGTTCCGAGAGGATGACGAGAGG
GAGGGAGGGAAGGAGGGAGGGATGAGAGAGGGAGGGCAAGTGAAAGGCGA
CAAGACGACGAAGATGCACACACGCAGACAAAGTGGTGGTGTCCAGCTAT
AA
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protein sequence of NO07G03340.1

>NO07G03340.1-protein ID=NO07G03340.1-protein|Name=NO07G03340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=553bp
MYIPRHAHTPKEIILMYSGDRTNAASIPSHVCPCLQTSGLKTTNITSRIR
FDLNSHLLLNTVRQDHSYGCSPAEEKKTRMRRTSSTSRPSGNVLIRAVLC
ALLASSTAAFVIRPPSPPTASCSPLWKRQQQQPHPSSSLSPSPTSTQLAS
AAASGPGAFEKDNGGWKDVNFLPQKTADVRQGSFRLPRLTDFLTTFPPAS
YLYKWTRLMKAPVYEGLKHDDYFEACRQLGVPPDIDEGRLAAKVDALLVK
YEKDRKKKIMIDWSSDKIMEHRVYMQLEGKAYKPVGEPVDMRLLDERYLD
ISPKDALDLMTSLDLSPADVKGQPNALAKVVNSPLLRALQITRLVRMARY
VWMAFGESLEGPNLRRMLWPGSVGLVLALWFGNAVDFVPLKYFITIMANT
GPIYNRGEAKLANRKERRPIKWKKLLLAFAFMGMSTGGAWAGGKAWCALK
YPTGELSEGLFIPLVANIVTYVMSSCFFIRESTLAGGRAARDAEGGEGGK
GGKGGEGGQHKMFREDDEREGGKEGGMREGGQVKGDKTTKMHTRRQSGGV
QL*
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Synonyms
Publications