NO07G03310, NO07G03310 (gene) Nannochloropsis oceanica

Overview
NameNO07G03310
Unique NameNO07G03310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length867
Alignment locationchr7:912337..913203 +

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Properties
Property NameValue
DescriptionLight-harvesting protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:912337..913203 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0009579thylakoid
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: KOO31514.1 (light-harvesting protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 172.6 bits (436), Expect = 1.600e-39
Identity = 89/172 (51.74%), Postives = 113/172 (65.70%), Query Frame = 0 
Query:   77 SKSVPFLLKPA----GLDGMVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATFSS 245
            SK++PFL  PA    GL G   + GFDPL  + F+DI+WLREAELK+GR+ MLA  G+++QEF  LP      PN V+AF  V  + L QI +F G+LE   +KGK +  +MF D  R PGN GFDPL FG + A RER  +AELKNGRLAM+A  G++H   VTG   F+S
Sbjct:   39 SKALPFLEAPACQSSGLAG--AETGFDPLYLSNFMDIKWLREAELKHGRICMLASTGYVMQEFFSLPSYPGYSPNPVEAFSSVPAEGLAQIVIFMGWLEIIGNKGKYSMSEMFADPARAPGNLGFDPLKFGANAATRERLEMAELKNGRLAMLAFSGMIHQTFVTGKPLFAS 208
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: XP_005786290.1 (light harvesting protein [Emiliania huxleyi CCMP1516] >EOD33861.1 light harvesting protein [Emiliania huxleyi CCMP1516])

HSP 1 Score: 170.6 bits (431), Expect = 5.900e-39
Identity = 86/170 (50.59%), Postives = 108/170 (63.53%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDGMV--GDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATFSS 245
            S ++PFL  P      +   + GFDPL  + FIDI+W REAELK+GR+ MLA +G+I+QEF  LPG     PN ++A     P+ L QI L    +EFN +K K T   MF D  REPGN GFDPL FG++   RER A+AELKNGRLAMIA  G++H   VTG   F+S
Sbjct:   24 SNAMPFLTAPPCQSSKLPGAETGFDPLYLSEFIDIKWAREAELKHGRICMLATVGYIMQEFFSLPGYPGYTPNPIEAVSSTPPEALAQIVLVLSIIEFNSNKDKWTMDTMFTDPAREPGNLGFDPLKFGENKETRERLAMAELKNGRLAMIAFSGMIHQTFVTGKPLFAS 193
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: XP_005821740.1 (light-harvesting Chl a protein 2 [Guillardia theta CCMP2712] >CAM33405.1 light harvesting complex protein 2 precursor [Guillardia theta] >EKX34760.1 light-harvesting Chl a protein 2 [Guillardia theta CCMP2712])

HSP 1 Score: 169.5 bits (428), Expect = 1.300e-38
Identity = 86/166 (51.81%), Postives = 111/166 (66.87%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDG-MVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHAT 242
            S +VPFL +P  LDG M GDVGFDPLGF+ + D++WLREAELK+GRV ML  LGF+VQE  +LP   + E   ++AFF V    L QIF   G +E   + G+++  DMF DG R PG+ GFDPL    D +   R+ LAELK+GRLAMI +GG++H  L+T   T
Sbjct:   40 SYAVPFLSRPPALDGTMAGDVGFDPLGFSNYFDLKWLREAELKHGRVCMLGTLGFLVQEKFQLPLPGFGEKLPIEAFFTVPTGGLWQIFFTLGAIEILSNNGRISPGDMFADG-RAPGDLGFDPLNLSSDESALRRFELAELKHGRLAMIGLGGMLHQQLLTKQPT 204
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: XP_005828838.1 (light-harvesting Chl a protein 17 [Guillardia theta CCMP2712] >EKX41858.1 light-harvesting Chl a protein 17 [Guillardia theta CCMP2712])

HSP 1 Score: 167.5 bits (423), Expect = 5.000e-38
Identity = 103/242 (42.56%), Postives = 128/242 (52.89%), Query Frame = 0 
Query:    1 MFRKLALALLCSSAVAFQVPAPLTRGSVRLHAEGKPAAPXXXXXXXXXXXXXXXXXXXXXXXXXKXXXXXXXXXVFSKSVPFLLKPAGLDG-MVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHAT 242
            MFR L +A   +SA AF   A L R   R+ A   P+                           +         +   +VPFL +P  LDG + GDVGFDP+GF+ +IDIRWLREAELK+GRV ML   G I QEF+ LP    +    V  FF V    L Q+F   G +EF  +  KLT  DMF +G RE G+ GFDPLG GK+P    R  L E+KNGRLAMIA GG++H  L+T   T
Sbjct:    1 MFRALLVAACAASAAAFAPSAVLPRAGARVAASKGPS--------------------------MQLWGDGTAQGLSINAVPFLQRPPALDGTLAGDVGFDPVGFSNYIDIRWLREAELKHGRVCMLGVTGLIAQEFVNLP-MFQNGKTPVDDFFVVPAAGLWQVFFTIGAIEFFTNGFKLTPGDMFSEG-REAGDLGFDPLGCGKNPEALARRRLVEVKNGRLAMIAFGGMIHQQLLTKQGT 214
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: XP_005702414.1 (light-harvesting complex protein [Galdieria sulphuraria] >XP_005707804.1 light-harvesting complex protein [Galdieria sulphuraria] >EME25894.1 light-harvesting complex protein [Galdieria sulphuraria] >EME31284.1 light-harvesting complex protein [Galdieria sulphuraria])

HSP 1 Score: 167.5 bits (423), Expect = 5.000e-38
Identity = 87/151 (57.62%), Postives = 106/151 (70.20%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDG-MVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIA 227
            S+++PFL  P  LDG MVGDVGFDPLGF+T ID+R+LRE+ELK+ R+AMLA +GFIVQEFI LPGDL+S P+ ++A  QV     +QIFL    LE       +  +     G REPG FGFDPLG  KD    +RY L+ELKNGRLAMIA
Sbjct:   55 SQAIPFLKAPPSLDGTMVGDVGFDPLGFSTIIDLRYLRESELKHCRIAMLAVVGFIVQEFIHLPGDLFSNPHPMQAIGQVPISGWIQIFLLVAILEMI----DIAAIKETLQGNREPGYFGFDPLGLAKDKQAHDRYLLSELKNGRLAMIA 201
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: CAC10535.1 (light-harvesting protein [Galdieria sulphuraria])

HSP 1 Score: 165.6 bits (418), Expect = 1.900e-37
Identity = 83/163 (50.92%), Postives = 113/163 (69.33%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDG-MVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQ-VGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVT 238
            SK++PFL +P  LDG MVGDVGFDPL  ++++D+RWLRE+ELK+ R+AMLA +G+ VQE   LP  +YS  +  +AF++ +   P+ QI L+  F E          + M +   REPG FGFDPLG GK+P   +R+ L+ELKNGRLAMIAIGGL+H + +T
Sbjct:   46 SKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESELKHCRIAMLAVVGWFVQEVFHLPNQIYSASDPTEAFWKTLATGPMGQIVLWTSFFEI---ISTPAVIQMLQGSGREPGYFGFDPLGLGKNPQLYKRFQLSELKNGRLAMIAIGGLIHQSFLT 205
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: CAC87422.1 (light-harvesting protein [Galdieria sulphuraria])

HSP 1 Score: 165.2 bits (417), Expect = 2.500e-37
Identity = 83/163 (50.92%), Postives = 113/163 (69.33%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDG-MVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQ-VGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVT 238
            SK++PFL +P  LDG MVGDVGFDPL  ++++D+RWLRE+ELK+ R+AMLA +G+ VQE   LP  +YS  +  +AF++ +   P+ QI L+  F E          + M +   REPG FGFDPLG GK+P   +R+ L+ELKNGRLAMIAIGGL+H + +T
Sbjct:   46 SKAIPFLDRPPALDGSMVGDVGFDPLNISSYLDLRWLRESELKHCRIAMLAVVGWFVQEVFHLPNXIYSASDPTEAFWKTLATGPMGQIVLWTSFFEI---ISTPAVIQMLQGSGREPGYFGFDPLGLGKNPQLYKRFQLSELKNGRLAMIAIGGLIHQSFLT 205
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: AAP80713.1 (light-harvest protein [Griffithsia japonica])

HSP 1 Score: 164.9 bits (416), Expect = 3.200e-37
Identity = 85/161 (52.80%), Postives = 104/161 (64.60%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGL-DGMVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALV 237
            S SVPFL KP  L D ++G  GFDPL F   +D RW++EAE+K+GRV+MLA LG +VQEFI LP   +  P   +AFFQV    L QIFLFCGF E  +HKGKL+  DMF DG   PG  GF+P+      + R    L E+KNGRLAM A GG +H  L+
Sbjct:   39 SASVPFLKKPENLPDTLIGYTGFDPLNFTGRVDYRWMQEAEIKHGRVSMLAVLGMLVQEFIHLPAKGFENPLATEAFFQVPSAGLFQIFLFCGFAELYLHKGKLSPSDMFSDG-ATPGELGFNPMNLDVSDSLR----LKEIKNGRLAMCASGGFIHSMLL 194
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: CAC10532.1 (light-harvesting protein [Galdieria sulphuraria] >CAC87419.1 light-harvesting protein [Galdieria sulphuraria])

HSP 1 Score: 164.9 bits (416), Expect = 3.200e-37
Identity = 85/151 (56.29%), Postives = 106/151 (70.20%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDG-MVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIA 227
            S+++PFL  P  LDG MVGDVGFDPLGF++ ID+R+LRE+ELK+ R+AMLA +GFIVQEFI LPGD++S P+ ++A  QV     +QIFL    LE       +  +     G REPG FGFDPLG  KD    +RY L+ELKNGRLAMIA
Sbjct:   55 SRAIPFLKAPPSLDGSMVGDVGFDPLGFSSIIDLRYLRESELKHCRIAMLAVVGFIVQEFIHLPGDVFSNPHPMQAIGQVPVAGWVQIFLLVAILEMI----DIAAIKETLQGNREPGYFGFDPLGLAKDKQAHDRYLLSELKNGRLAMIA 201
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: ACU45309.1 (light-harvesting complex protein LHCC4, partial [Rhodomonas sp. CCMP768])

HSP 1 Score: 164.5 bits (415), Expect = 4.200e-37
Identity = 86/164 (52.44%), Postives = 108/164 (65.85%), Query Frame = 0 
Query:   79 SVPFLLKPAGLDG-MVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHAT 242
            +VPFL +P  LDG + GDVGFDP+GF+ + D+RWLREAELK+GRV ML   G +VQEF+ LP    +    V  FF V    L Q+F   G +EF  +  KLT  DMF +G R+ G+ GFDPLG GK+P    R  L E+KNGRLAMIA GG++H  L+TG  T
Sbjct:   41 AVPFLERPPALDGSLAGDVGFDPVGFSNYFDLRWLREAELKHGRVCMLGVTGLLVQEFVTLP-QFSNGKTPVDDFFVVPSAGLWQVFFTIGAVEFFSNGFKLTPGDMFSEG-RDAGDLGFDPLGCGKNPDALARRRLVEVKNGRLAMIAFGGMLHQQLLTGQGT 202
The following BLAST results are available for this feature:
BLAST of NO07G03310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KOO31514.11.600e-3951.74light-harvesting protein [Chrysochromulina sp. CCM... [more]
XP_005786290.15.900e-3950.59light harvesting protein [Emiliania huxleyi CCMP15... [more]
XP_005821740.11.300e-3851.81light-harvesting Chl a protein 2 [Guillardia theta... [more]
XP_005828838.15.000e-3842.56light-harvesting Chl a protein 17 [Guillardia thet... [more]
XP_005702414.15.000e-3857.62light-harvesting complex protein [Galdieria sulphu... [more]
CAC10535.11.900e-3750.92light-harvesting protein [Galdieria sulphuraria][more]
CAC87422.12.500e-3750.92light-harvesting protein [Galdieria sulphuraria][more]
AAP80713.13.200e-3752.80light-harvest protein [Griffithsia japonica][more]
CAC10532.13.200e-3756.29light-harvesting protein [Galdieria sulphuraria] >... [more]
ACU45309.14.200e-3752.44light-harvesting complex protein LHCC4, partial [R... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000528NSK000528Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03310.1NO07G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100056g15gene3508Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03310.1NO07G03310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03310 ID=NO07G03310|Name=NO07G03310|organism=Nannochloropsis oceanica|type=gene|length=867bp
ATGTTCCGCAAGCTTGCGCTGGCCCTCCTGTGCTCCTCCGCCGTCGCCTT
CCAGGTGCCGGCCCCCCTCACCCGAGGCTCGGTGCGCCTTCATGCCGAAG
GCAAGCCCGCCGCTCCCCCTGCCGCCGCTCCCCCTGCCGCTGCTCCCGCT
GCTGCGGCTCCCGCTGCTGCCGCCCCAGCTGCCGCCGCTGTCAAGCCCCC
TCCTCCCCCGCCCCCCCCTAAGGTCTTCTCCAAGTCGGTGCCTTTCCTGT
TGAAGCCTGCGGGTCTGGACGGGATGGTCGGCGACGTCGGCTTTGATCCC
CTAGGGTTCGCGACCTTCATCGACATCCGATGGCTGCGAGAGGCTGAGCT
GAAGAACGgtatgtcctcacaattatgatgaggatagggcgtgtgtcgta
ttgtcgggcaggcaagacaggaagaatatgagaagccttataacgacctt
ctcacaccacccctctctcctatgaaactcttcaccccagGCCGAGTGGC
CATGCTCGCCTTCCTGGGCTTTATCGTCCAAGAGTTTATCCGCCTCCCTG
GTGACCTCTACTCGGAGCCCAACGGCGTCAAGGCGTTCTTCCAAGTCGGA
CCCCAGCCGCTTCTGCAAATCTTCCTGTTCTGCGGTTTTCTTGAGTTTAA
TATGCACAAGGGTAAGCTGACTCAAGTCGACATGTTTGAGGACGGCAAGC
GCGAGCCCGGCAACTTTGGGTTCGATCCGCTTGGATTTGGCAAGGACCCT
GCGAAGCGCGAGAGGTATGCACTTGCTGAGCTGAAGAACGGCCGGTTGGC
AATGATTGCGATCGGCGGCCTGGTGCACCATGCGTTGGTGACAGGTCATG
CCACGTTTAGTAGCTAA
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protein sequence of NO07G03310.1

>NO07G03310.1-protein ID=NO07G03310.1-protein|Name=NO07G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MFRKLALALLCSSAVAFQVPAPLTRGSVRLHAEGKPAAPPAAAPPAAAPA
AAAPAAAAPAAAAVKPPPPPPPPKVFSKSVPFLLKPAGLDGMVGDVGFDP
LGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVK
AFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPL
GFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATFSS*
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Synonyms
Publications