NO07G03310, NO07G03310 (gene) Nannochloropsis oceanica

Overview
NameNO07G03310
Unique NameNO07G03310
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length867
Alignment locationchr7:912337..913203 +

Link to JBrowse

Properties
Property NameValue
DescriptionLight-harvesting protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:912337..913203 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016020membrane
GO:0009579thylakoid
GO:0009507chloroplast
Vocabulary: Biological Process
TermDefinition
GO:0009765photosynthesis, light harvesting
GO:0015979photosynthesis
GO:0006464cellular protein modification process
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR001344Chloro_AB-bd_pln
IPR022796Chloroa_b-bind
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Homology
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: EWM27030.1 (light-harvesting protein [Nannochloropsis gaditana])

HSP 1 Score: 364.0 bits (933), Expect = 3.600e-97
Identity = 210/244 (86.07%), Postives = 221/244 (90.57%), Query Frame = 0 
Query:    1 MFRKLALALLCSSAVAFQVPAPLTRGSVRLHAEGKPAAPXXXXXXXXXXXXXXXXXXXXXXXXXKXXXXXXXXXVFSKSVPFLLKPAGLDGMVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATFSS 245
            MFRKLALALLCSSAVAF  PAP++R SVRL AE KP          XXXXXXXXXXXXXXXXXX XXXXXXXXXVFSKSVPFLLKP  LDGMVGDVGFDPLG A ++DIRWLREAELKNGRVAMLAFLGF+VQEFIRLPGDLYSEPNGVKAFFQVGPQPL+QIFLFCGFLEF +HKGK+TQ+DMF DGKREPGNFGFDPLGFGKDP+KRER ALAELKNGRLAMIAIGGL+HHALVTGHATFSS
Sbjct:   62 MFRKLALALLCSSAVAFHAPAPVSRSSVRLQAENKP----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXVFSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSKRERLALAELKNGRLAMIAIGGLIHHALVTGHATFSS 295
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: CAC10533.1 (light-harvesting protein [Galdieria sulphuraria] >CAC14025.1 light-harvesting protein [Galdieria sulphuraria] >CAC87420.1 light-harvesting protein [Galdieria sulphuraria])

HSP 1 Score: 213.0 bits (541), Expect = 1.000e-51
Identity = 101/162 (62.35%), Postives = 123/162 (75.93%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDGMV-GDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVT 238
            S SVPFL +P  LDG   GDVGFDPL  +  +DI+WLRE+E+K+GR+AMLA LGFIVQEF+ LPG ++S    V AFFQV    L QIFLF G LEF M+KGK+T +DMF D  R+PG+FGFDPLG GKDP  R RY +AE+KNGRLAM+A+GG +HH  +T
Sbjct:   48 SPSVPFLERPQNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRIAMLAALGFIVQEFVHLPGQVFSNKVAVDAFFQVPRGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQTRRRYQVAEIKNGRLAMLAVGGFIHHMFLT 209
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: XP_005703151.1 (light-harvesting complex protein [Galdieria sulphuraria] >EME26631.1 light-harvesting complex protein [Galdieria sulphuraria])

HSP 1 Score: 210.3 bits (534), Expect = 6.700e-51
Identity = 98/162 (60.49%), Postives = 124/162 (76.54%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDGMV-GDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVT 238
            S SVPFL +P  LDG   GDVGFDPL  +  +DI+WLRE+E+K+GR+ MLA +GFIVQEF+ LPG+++S    + A FQV    L QIFLF G LEF M+KGK+T +DMF D  R+PG+FGFDPLG GKDP  R+RY +AE+KNGRLAM+A+GG +HH L+T
Sbjct:   49 SLSVPFLERPKNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRICMLAAVGFIVQEFVHLPGEVFSNKVAIDALFQVPSGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQARKRYEVAEIKNGRLAMLAVGGFIHHMLLT 210
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: CBN79580.1 (Light harvesting complex protein [Ectocarpus siliculosus])

HSP 1 Score: 201.8 bits (512), Expect = 2.400e-48
Identity = 96/163 (58.90%), Postives = 121/163 (74.23%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDGMVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAK-RERYALAELKNGRLAMIAIGGLVHHALVTG 239
            S S+PFL +P  L+GMVGD+GFDP GFAT   ++++REAELK+GRVAMLA +G++V E + +PG  Y   N V A   VGP P+LQIFLFCGFLE+  H GK+T  +M EDG  EPG+FGFDP+   K PA  RE+Y L E+KNGRLAM AIGGL+H +L+ G
Sbjct:   66 SASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDG-NEPGDFGFDPMMLAKKPADVREKYQLQEIKNGRLAMSAIGGLIHQSLLLG 227
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: OSX71994.1 (hypothetical protein BU14_0483s0007 [Porphyra umbilicalis])

HSP 1 Score: 199.5 bits (506), Expect = 1.200e-47
Identity = 101/158 (63.92%), Postives = 118/158 (74.68%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDG-MVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGK-DPAKRERYALAELKNGRLAMIAIGGLVH 233
            S SVPFL +PA  DG M GDVGFDPL  + FIDI+WLRE ELKNGRVAMLAFLG +VQEF+ LP  L++ P    AFFQV    L Q+FL CG  EF  H+GKL+  DMFEDG R PGNFGFDPLG  K  PA++++  LAE+KNGRLAMI IGG++H
Sbjct:   35 SASVPFLPQPAACDGSMAGDVGFDPLNLSGFIDIKWLREGELKNGRVAMLAFLGVLVQEFVHLPSPLFANPVATDAFFQVPAGGLWQVFLACGLCEFVSHRGKLSYDDMFEDG-RIPGNFGFDPLGLYKGTPAQKKKLELAEVKNGRLAMIGIGGVIH 191
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: XP_005821765.1 (light-harvesting Chl a protein 9 [Guillardia theta CCMP2712] >CAM33412.1 light harvesting complex protein 9 precursor [Guillardia theta] >EKX34785.1 light-harvesting Chl a protein 9 [Guillardia theta CCMP2712])

HSP 1 Score: 198.7 bits (504), Expect = 2.000e-47
Identity = 99/163 (60.74%), Postives = 120/163 (73.62%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDG-MVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTG 239
            S+SVPFL +PA LDG MVGDVGFDP GF++  DI+WLRE+ELK+GRV MLA LG+IVQEF+ LP +  S P G +AF+QV    L QIF F G +E   H  K++   MF DG R PGNFGFDPLGFGK+P  R RY LAELKNGRLAM+   G++H + +TG
Sbjct:   42 SQSVPFLPRPAALDGKMVGDVGFDPFGFSSKYDIKWLRESELKHGRVCMLASLGYIVQEFVHLPFEATSNPVGSEAFYQVPAGGLWQIFAFIGAIEHFSHNFKMSGSTMFSDG-RTPGNFGFDPLGFGKNPQARARYELAELKNGRLAMLGFSGMIHGSFITG 203
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: XP_002178624.1 (protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50289.1 protein fucoxanthin chlorophyll a/c protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 180.6 bits (457), Expect = 5.700e-42
Identity = 90/168 (53.57%), Postives = 117/168 (69.64%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDGMVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYA--LAELKNGRLAMIAIGGLVHHALVTGHATF 243
            SKS+PFL  P    G VGDVGFDPLGF+   D++WLRE+E+K+GR AMLA +GF++Q+F  LPG ++ + + + A    G  P+LQI    G LE+  +KGK+T  DMF D  REPGN GFDP+G  K+ +K E  A  L E+KNGRLAM+AIGG++HH  VTG A F
Sbjct:   34 SKSMPFLTAPKNTGGYVGDVGFDPLGFSDNFDMKWLRESEIKHGRAAMLATVGFVMQQFWTLPGMVHVDDSNL-APGAAGISPMLQIVFGMGALEWWTNKGKVTMEDMFSDSSREPGNLGFDPMGMSKNKSKEEAEAMQLKEIKNGRLAMLAIGGMIHHNWVTGEALF 200
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: GAX16008.1 (light-harvesting complex I chlorophyll a/b binding protein 4 [Fistulifera solaris])

HSP 1 Score: 177.2 bits (448), Expect = 6.300e-41
Identity = 90/168 (53.57%), Postives = 112/168 (66.67%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDGMVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGF--GKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATF 243
            SKS+PFL  P    G VGDVGFDPLGF+ + D++WLRE+E+K+ R AMLA LGF+VQ+F+ LPG +    + + A   VGP P+LQIF   G LEF  + GK+T  +MF D  R PGNFGFDPLG   GK         L E+KNGRLAM AIGG++ H +VTG   F
Sbjct:   33 SKSIPFLTAPKNTAGWVGDVGFDPLGFSDYFDMKWLRESEIKHSRAAMLASLGFMVQQFVTLPG-MPDVDDSMLAPAAVGPSPMLQIFFGLGVLEFWSNNGKVTIENMFSDSSRVPGNFGFDPLGMAKGKSAEAMADMELKEIKNGRLAMCAIGGMMAHNIVTGEPLF 199
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: GAX11451.1 (light-harvesting complex I chlorophyll a/b binding protein 4 [Fistulifera solaris])

HSP 1 Score: 176.4 bits (446), Expect = 1.100e-40
Identity = 89/164 (54.27%), Postives = 111/164 (67.68%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDGMVGDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGF--GKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTG 239
            SKS+PFL  P    G VGDVGFDPLGF+ + D++WLRE+E+K+ R AMLA LGF+VQ+F+ LPG +    + + A   VGP P+LQIF   G LEF  + GK+T  +MF D  R PGNFGFDPLG   GK         L E+KNGRLAM AIGG++ H +VTG
Sbjct:   33 SKSIPFLTAPKNTAGWVGDVGFDPLGFSDYFDMKWLRESEIKHSRAAMLASLGFVVQQFVTLPG-MPDVDDSMLAPAAVGPSPMLQIFFGLGVLEFWSNNGKVTIENMFSDSSRVPGNFGFDPLGMAKGKSAEAMADMELKEIKNGRLAMCAIGGMMAHNIVTG 195
[Close]
BLAST of NO07G03310 vs. NCBI_GenBank
Match: ABA55529.1 (chloroplast light harvesting protein isoform 13 [Isochrysis galbana])

HSP 1 Score: 174.1 bits (440), Expect = 5.300e-40
Identity = 87/170 (51.18%), Postives = 110/170 (64.71%), Query Frame = 0 
Query:   77 SKSVPFLLKPAGLDGMV--GDVGFDPLGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVKAFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPLGFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATFSS 245
            SK+VPFL  P      +   + GFDPL  + +IDI+W REAELK+GR+ MLA  G+  QEF+ LPG     PNG++A   V P+ L QI LF   +E+N +  K TQ  MF D KREPGN GFDPL FG + A R R  +AELKNGRLAM+A  G++H  LVTG   ++S
Sbjct:   36 SKAVPFLSAPPCQSSKLAGAETGFDPLYLSEYIDIKWAREAELKHGRICMLAATGYFFQEFLALPGFPGYTPNGIEAATSVSPESLAQIVLFMSVVEYNSNLNKWTQDTMFTDPKREPGNLGFDPLHFGDNKASRARLEMAELKNGRLAMLAFSGMIHQTLVTGKPVWAS 205
The following BLAST results are available for this feature:
BLAST of NO07G03310 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27030.13.600e-9786.07light-harvesting protein [Nannochloropsis gaditana... [more]
CAC10533.11.000e-5162.35light-harvesting protein [Galdieria sulphuraria] >... [more]
XP_005703151.16.700e-5160.49light-harvesting complex protein [Galdieria sulphu... [more]
CBN79580.12.400e-4858.90Light harvesting complex protein [Ectocarpus silic... [more]
OSX71994.11.200e-4763.92hypothetical protein BU14_0483s0007 [Porphyra umbi... [more]
XP_005821765.12.000e-4760.74light-harvesting Chl a protein 9 [Guillardia theta... [more]
XP_002178624.15.700e-4253.57protein fucoxanthin chlorophyll a/c protein [Phaeo... [more]
GAX16008.16.300e-4153.57light-harvesting complex I chlorophyll a/b binding... [more]
GAX11451.11.100e-4054.27light-harvesting complex I chlorophyll a/b binding... [more]
ABA55529.15.300e-4051.18chloroplast light harvesting protein isoform 13 [I... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000528NSK000528Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03310.1NO07G03310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100056g15gene3508Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03310.1NO07G03310.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03310 ID=NO07G03310|Name=NO07G03310|organism=Nannochloropsis oceanica|type=gene|length=867bp
ATGTTCCGCAAGCTTGCGCTGGCCCTCCTGTGCTCCTCCGCCGTCGCCTT
CCAGGTGCCGGCCCCCCTCACCCGAGGCTCGGTGCGCCTTCATGCCGAAG
GCAAGCCCGCCGCTCCCCCTGCCGCCGCTCCCCCTGCCGCTGCTCCCGCT
GCTGCGGCTCCCGCTGCTGCCGCCCCAGCTGCCGCCGCTGTCAAGCCCCC
TCCTCCCCCGCCCCCCCCTAAGGTCTTCTCCAAGTCGGTGCCTTTCCTGT
TGAAGCCTGCGGGTCTGGACGGGATGGTCGGCGACGTCGGCTTTGATCCC
CTAGGGTTCGCGACCTTCATCGACATCCGATGGCTGCGAGAGGCTGAGCT
GAAGAACGgtatgtcctcacaattatgatgaggatagggcgtgtgtcgta
ttgtcgggcaggcaagacaggaagaatatgagaagccttataacgacctt
ctcacaccacccctctctcctatgaaactcttcaccccagGCCGAGTGGC
CATGCTCGCCTTCCTGGGCTTTATCGTCCAAGAGTTTATCCGCCTCCCTG
GTGACCTCTACTCGGAGCCCAACGGCGTCAAGGCGTTCTTCCAAGTCGGA
CCCCAGCCGCTTCTGCAAATCTTCCTGTTCTGCGGTTTTCTTGAGTTTAA
TATGCACAAGGGTAAGCTGACTCAAGTCGACATGTTTGAGGACGGCAAGC
GCGAGCCCGGCAACTTTGGGTTCGATCCGCTTGGATTTGGCAAGGACCCT
GCGAAGCGCGAGAGGTATGCACTTGCTGAGCTGAAGAACGGCCGGTTGGC
AATGATTGCGATCGGCGGCCTGGTGCACCATGCGTTGGTGACAGGTCATG
CCACGTTTAGTAGCTAA
back to top

protein sequence of NO07G03310.1

>NO07G03310.1-protein ID=NO07G03310.1-protein|Name=NO07G03310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MFRKLALALLCSSAVAFQVPAPLTRGSVRLHAEGKPAAPPAAAPPAAAPA
AAAPAAAAPAAAAVKPPPPPPPPKVFSKSVPFLLKPAGLDGMVGDVGFDP
LGFATFIDIRWLREAELKNGRVAMLAFLGFIVQEFIRLPGDLYSEPNGVK
AFFQVGPQPLLQIFLFCGFLEFNMHKGKLTQVDMFEDGKREPGNFGFDPL
GFGKDPAKRERYALAELKNGRLAMIAIGGLVHHALVTGHATFSS*
back to top
Synonyms
Publications