NO07G03280, NO07G03280 (gene) Nannochloropsis oceanica

Overview
NameNO07G03280
Unique NameNO07G03280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2120
Alignment locationchr7:905428..907547 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:905428..907547 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G03280 vs. NCBI_GenBank
Match: EWM27058.1 (hypothetical protein Naga_100056g18 [Nannochloropsis gaditana])

HSP 1 Score: 79.0 bits (193), Expect = 6.000e-11
Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 0 
Query:  210 KIKGLWGSLKEKIASGVDSVSKSSTVENGLRYLARDYEQP 250
            K+KGLWGS KEKIASGVDSVSKSSTVENGLRYLARDY+QP
Sbjct:  208 KLKGLWGSFKEKIASGVDSVSKSSTVENGLRYLARDYDQP 247
The following BLAST results are available for this feature:
BLAST of NO07G03280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27058.16.000e-1192.50hypothetical protein Naga_100056g18 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000531NSK000531Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03280.1NO07G03280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100056g18gene3505Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03280.1NO07G03280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03280 ID=NO07G03280|Name=NO07G03280|organism=Nannochloropsis oceanica|type=gene|length=2120bp
ATGCAGGCCTTGCCCCTCCTCTTTCTGGCCCTGGTCGTCGCGGCAGCTGT
CGCGGCCTCCAGCCGAATGTGGGGAGCGCCCTCGTCCTCTACCTCTGCAG
CTTTCCACCACCAGCGTTCCCACCGCGGACGACTCGCCTTTGACTACCCA
GCCTACGAATCCTCATCATCGTCACAACATTCCGGTGGTCCTCCTTCATC
TCCTCCCCCTCCTCCTGGTGGTCCTTACCAGTCGCATCCCCATCACCAAC
ACCAACACCAGCAGCACCAAAGGTCGCCTGCGGGGGCAGGGCCAGGACAG
TACTCTCCTCCTCCTCTTCCTCCCCACCATCAGCAACAGCACCAACAGCA
CCCACAGCACCAACAGCATCAACACACACAAGATCAATGGGGTGGTTACG
GCCAGCAGCCGCCTCCTTCCCAACAGCAGCAAGGCGGGGACCTTGGTGCC
GAGGGAGGACAAGGACAGGGGCCGTATGATGGAGGGCAGGGGGGGCAAGG
AGGAGGATATGGAGCATTCTATAGTAGCCAGGGGCAACATGGCTATGGGT
CTTACTACGGCGTGCAGCCTGGGGGGCAGGGAGGAGGGGCAGCAGCAGGG
CAGCCGGAAGGACCGTCCGTGGGTGCCAAGATTAAGGGATTGTGGGGGAG
TTTGAAGGAGAAGATCGCGAGTGGCGTTGATTCAGTCTCCAAGAGCAGTA
CTGTCGAGAATGGCTTGAGGTATTTAGCGAGGGATTACGAGCAGCCAGGA
GGAGGGAGCGGGGGTTATTATGGCGGAGGCCCTTCGTATGAAGGAGCAGG
AGCAGGAGGAGCACCGCAGCTCTTGCCTGGTGGTGGAGCGTACTCGTCCC
CACAGCAGCAGCAACAGCAGCCGCCGACACAAGGAGGGATATGGGGAGAT
TCTACGAGGGGGTATCCTGGGCCTTATGGTCCGCCGCCCGGGCACCAGCA
GTACCAGCAGCACCAGCAGCAGCAGCCGCAGATGCCTTACCCTTCTTCCC
GTGGCGCCTACCCGCCGCCGGATGAAAGAGAGCGCGAGGAGGATGAGCCA
TCTCAGCATAAGATTGTCAATGAAATGCAAGAGCGTTTCCGCACGCAAGG
TCGATTGGAAGAACGAGGCGGGCCGCCGCCGCCGCCGCTACAAGGGTGGC
AGATGCCCCCGCAGCAACAGCAGCAACAGCAGCACCAGCAGCACCAGCAG
CACCAGCAGCAGAGGCCTGTAGTTCCAGGTGGAAGCGTGCCTACTGCTCC
TGCTGCAGGCACTAACCCGCCAGTGGGAGGTCCTTGGGGATATTCAACCC
AGGGGCCACCTCCATCACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAG
CGACACCCGTCAGAGGGGCCTGCCCGACCGCCGACAACAGTACAGCAGCA
GCAGGGGAGTTACCCAGGAGCAGGAGAGCAACAGCGTTATGGTGCTGGTG
TTGGGGGAGAGGCGGCTTATCCCCAGCACCAGCAGCACCAGCAGCATCAG
CGTCCGGCGCCGCAGCATCAGCAAGTCTACCCCCCTCGACAGCAACCACA
GCAGGAGCAGCAGCAGCAGTACCCGCCATCCCGCCCTTCCTCCCAGCATC
AGCAGCGCTATCAGACCCCTTCGTCAGGGGGGCAGCACGAGAGTGGTAGT
AGCGGTATTTCCGACCAACAGCAGCAGTACCAGCAGCAGCAACAACCGCA
TCCTGAAGAAGAAGGGAGCGAGGGTGGAGGCAGCAATGGCGCTGCTGCTC
CGCCTGACCGAGCAGGTGGAGCAGCAGCAACAGGAGGAGCACCTGCAGGA
GCGTCTGGTGCAGCCGGGGCCGCTGCTCCTAGTGAGGAGGTGAGGGACGT
ATGGGGGCACGAGGAGGATTTCTGACGACTACAGGAGGTGAATTGAGGAG
GAGGGTGGGTGGGATGAAGGGAAAGGGAATGTATGTTTTGTTGCATTCCT
CTCGCTTATTGGTTTAAATGTGTCTATAATCGTTCGTATTCATTGGATAT
TACTCATTCTGTTGGGCAAGTCTTGTCTGTGTACGTACCCACCTACTTTA
TTGCCTGCCTCCCTTCTTCCCTCCCGCCATCCCTCCCTACTGCTTCAGGG
GCAAGCCGGCGGCACAACAC
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protein sequence of NO07G03280.1

>NO07G03280.1-protein ID=NO07G03280.1-protein|Name=NO07G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=625bp
MQALPLLFLALVVAAAVAASSRMWGAPSSSTSAAFHHQRSHRGRLAFDYP
AYESSSSSQHSGGPPSSPPPPPGGPYQSHPHHQHQHQQHQRSPAGAGPGQ
YSPPPLPPHHQQQHQQHPQHQQHQHTQDQWGGYGQQPPPSQQQQGGDLGA
EGGQGQGPYDGGQGGQGGGYGAFYSSQGQHGYGSYYGVQPGGQGGGAAAG
QPEGPSVGAKIKGLWGSLKEKIASGVDSVSKSSTVENGLRYLARDYEQPG
GGSGGYYGGGPSYEGAGAGGAPQLLPGGGAYSSPQQQQQQPPTQGGIWGD
STRGYPGPYGPPPGHQQYQQHQQQQPQMPYPSSRGAYPPPDEREREEDEP
SQHKIVNEMQERFRTQGRLEERGGPPPPPLQGWQMPPQQQQQQQHQQHQQ
HQQQRPVVPGGSVPTAPAAGTNPPVGGPWGYSTQGPPPSQQQQQQQQQQQ
RHPSEGPARPPTTVQQQQGSYPGAGEQQRYGAGVGGEAAYPQHQQHQQHQ
RPAPQHQQVYPPRQQPQQEQQQQYPPSRPSSQHQQRYQTPSSGGQHESGS
SGISDQQQQYQQQQQPHPEEEGSEGGGSNGAAAPPDRAGGAAATGGAPAG
ASGAAGAAAPSEEVRDVWGHEEDF*
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Synonyms
Publications