NO07G03260, NO07G03260 (gene) Nannochloropsis oceanica

Overview
NameNO07G03260
Unique NameNO07G03260
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3114
Alignment locationchr7:901055..904168 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:901055..904168 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO07G03260 vs. NCBI_GenBank
Match: EWM27061.1 (hypothetical protein Naga_100056g21 [Nannochloropsis gaditana])

HSP 1 Score: 369.0 bits (946), Expect = 3.300e-98
Identity = 263/691 (38.06%), Postives = 342/691 (49.49%), Query Frame = 0 
Query:   28 KRRESKVLPHSPTCTQCHAELQPSVRWHPIIPVPLCVGCYVSATQTIHAFYRRHQQQAWLDRQSETRSQCTGRPESAATTSAVTAAGTASVCSEGPTI---SNERXXXXXXXXXXXXXXPITVCIWCLRLVQDVEAGSSVLRCGQQSS-----PKHPSHVVFCQTCLGSYFNAPTVEHWSMQSKEGVWTCLICDKTPLLELAWEEGWGLPHYPHDLRLSAEIQDVLAKAFAVPHPRQREITMMSVAHSADENGSETTSEASRKRLRLAKSPTTNSPNLPPFLVPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKGSPFAWQSFLAECEGDATLIVLVEQTQQALSLITRLWREAAVQVAAREDILDMGPGLTRNMMLMQQGRVAEGEG-----LTRRPTIDYMPSGTDRPETGETDKRSNSSSRSGGSSSCLDGSGAGGHELEVQPATARMNMAEKDAQQAIRKSLVELRVLLQQMRLMSDQRQQGSAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXDL-------------------FGLDYEMKRMEQLQAWLLSSQGVLRCLHNQVLEVLNRAQLQPSRSSSPQTSAETGPTGSEIFPAGNEKKAISTEMEEHVSGKKKRNKHVRQEGDYVNDVEEHSDFERRLRASGESLKELEKDLSLRLEDVGYAVSILCQMK 687
            +RRE KVLPHS  CTQCH++LQ S+ WHPIIPVPLC+GCYVS   TI AFYRRHQ++AW +++         R +  A  + + +       S    I   ++                PITVCIWCLRL Q  +    +LRC  +S+      KHPS V FC+TCL  YF    V+ W ++S+EG WTCLIC+K P LELAWEEGWGLP YP DLRLSAEIQ++L K FA PHPR+   T  ++ +   E   + TSE  R     A     NS   P     L                                         SP  + S L+ CE + TL+VL+E TQQALSL+ RLW+EAAVQVAARED+LDMG  L   +  +++G   EG+      +  + TI+ +  G+  P   E +++      + G+  C D     G  +  + A    N AE++AQ+A+R SL ELRVLL+ M+ + DQ   G   +                                                   LDYEM+R++ LQ WL+SSQG+LR LH QVL VL RA   P                 ++   G E K    E E+             +EGD          F+RRL+AS  SL+EL KDLS+RLEDVGYAVSILCQMK
Sbjct:   10 RRREGKVLPHSSVCTQCHSKLQTSLCWHPIIPVPLCLGCYVSTIHTIRAFYRRHQEEAWSNKRE--------RKDHNAVHNEMKSYDYVDDYSNRHNIDQSADTHGPVDFAPFDSVNRAPITVCIWCLRLAQGADEACHILRCKSRSTLPSTDLKHPSDVGFCKTCLERYFEKAVVDKWCLESEEGGWTCLICNKVPFLELAWEEGWGLPQYPQDLRLSAEIQELLIKIFAEPHPRR---TTPAILYPDLER--QETSEGLRPATTAANGSELNSVLSPNSSSSLRLQSCASDQQRGRLSDERREVPLAPEQERELV--------SSPLEFLSSLSGCESNDTLLVLIEHTQQALSLLRRLWQEAAVQVAAREDMLDMGTELVEQIQYVRKGSQKEGQKECRTLIVEKRTINGV-KGSMGPAVRELERK-----EARGNRGCNDKCRHEGSAIYTRGA----NQAEREAQEAVRTSLTELRVLLRHMQYLRDQHMPGVCDDATINSGTLELPQKRSCTGLDKASGNVEKSCTLYTRVSPTPHPSHSDSSSAVLDYEMERLKNLQGWLVSSQGLLRSLHTQVLHVLARAH-PPXXXXXXXXXXXXXXXPQQLSQLG-EAKVQVIEREQ-------------KEGDV---------FQRRLKASEASLRELGKDLSVRLEDVGYAVSILCQMK 645
The following BLAST results are available for this feature:
BLAST of NO07G03260 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27061.13.300e-9838.06hypothetical protein Naga_100056g21 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000533NSK000533Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03260.1NO07G03260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581096gene_2660Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100056g21gene3503Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03260.1NO07G03260.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03260 ID=NO07G03260|Name=NO07G03260|organism=Nannochloropsis oceanica|type=gene|length=3114bp
CTTGAAGGCACCAGCTGACGCGCCGTTGAAAACAACCTCCCGGGCGTCCT
TCTCGAAGCAATAACCATGTCGTTGCACGAGATTTCACAGCTTACGTATC
GTAAATTCAAAAGGTCCTGAGTTTCAAGAACATGAAGGACAAGGGCAAGT
GTGCGGAGCCCTCTCTCACGAGTGCCTCGGATCGCCTGAGCCTCGGCCCA
GCGATTCCCAATAGGCTTCCAGACGCCGCGCTACTATCGTCTTAGAATGC
CACGGTCTTTTGCCATGCGTGTGGTATGTTGAGGCTATAAATATAGAGCA
CGTGTGCTTGTATACTGGCTGGTCTCATGCACTTTTTTCTTTATGCCCTC
CCGGGTCGCGCTCGCTGGACTTCCCCGTTCGCTCGCCTTTCTAGACGCTC
TCGTGAACACCAGGACCACGCCGAATCCTTGGCTACAGTTACTGGATAAT
ATGGCATACTTTTGCCAGTGGATCTTGTCATGCATGCATCCTGTCAGTTT
CAAAGCCTGCTCCGACCCCTTCCCTTCACAGCATTCAGACGACTCTACCG
ACCATGTTCGGCAACCGCGAGTGTCAGCCCTCTCCCCATAGTAAGAGGAC
TGACCCATTTAATTCGTGATTTCTAGACGCTAATTACAAGGACACACGAA
TAAAGATAGATATTTTTCCACGCGCTTCTCCCATTACAGTCCTTATTCAC
TTTCCTCCGATGCCACACCCGCTCACAGGTTTCCTCACGAAGCCGCCATG
GAGGCCGCCATTTCTCCCCCGGCCATTCCCTCCCTGCCTGCCTTTCGCCA
TACGTCGGCAGAAGAAGGAGGTCCTCTCAAGAGGCGGGAGTCTAAGGTGT
TGCCTCACTCCCCAACCTGCACGCAGTGCCACGCCGAGCTGCAACCATCC
GTCCGTTGGCATCCAATTATTCCGGTCCCACTTTGCGTGGGCTGCTACGT
CTCGGCCACACAGACCATTCACGCCTTCTACCGACGGCACCAGCAGCAGG
CCTGGTTGGACCGACAGAGCGAGACCAGAAGTCAGTGTACTGGACGTCCA
GAGTCCGCGGCCACTACTTCTGCTGTTACTGCTGCTGGTACTGCCAGCGT
CTGCTCGGAAGGTCCGACTATTAGCAACGAGAGAAGTACCTCCACTTCCA
CCACCACCAGCAGCAACTCTCAAGCGCCCATTACTGTCTGTATCTGGTGT
CTACGCCTCGTCCAGGACGTGGAAGCCGGTTCTAGCGTACTCCGCTGCGG
GCAACAATCCTCGCCCAAACACCCGTCGCATGTCGTCTTCTGCCAAACAT
GCCTGGGCTCATATTTCAACGCCCCGACCGTCGAACATTGGTCTATGCAA
AGCAAGGAAGGAGTTTGGACGTGTTTGATTTGTGATAAAACACCATTGTT
GGAGCTGGCTTGGGAGGAAGGGTGGGGCTTGCCACATTACCCCCATGACT
TGCGTTTGTCAGCTGAGATTCAAGACGTATTGGCCAAGGCGTTTGCTGTG
CCTCACCCACGGCAACGGGAGATTACAATGATGAGCGTTGCGCATTCTGC
CGATGAAAATGGGAGTGAAACGACAAGCGAAGCGTCGCGCAAACGCTTGC
GGCTAGCAAAGTCGCCCACGACCAACTCGCCTAACTTGCCACCCTTCCTC
GTGCCGCTCCCCGCCCAGCAGCAGGAGCAGCCGCAACAGCAGCAGCAGTA
TCACCACGCTCAATCCCAACCCCACCGGCCACCACAGCGGCAGCCGCAGG
AAGAGGAGAATAAGGAGCACCGCCAGAAAGGCTCACCATTTGCCTGGCAG
TCTTTTTTAGCCGAATGCGAGGGCGACGCGACTCTCATCGTCTTGGTCGA
GCAGACGCAACAAGCCCTCTCCCTCATCACTCGGCTCTGGCGGGAGGCAG
CCGTGCAGGTCGCGGCTCGTGAAGATATACTGGACATGGGGCCAGGATTA
ACACGAAACATGATGTTGATGCAGCAGGGACGCGTGGCGGAAGGCGAAGG
GCTGACCCGTCGGCCCACTATCGACTACATGCCGAGCGGCACAGATCGTC
CTGAAACCGGTGAAACGGATAAACGGAGCAATAGTAGCAGTCGAAGCGGT
GGGAGTAGCAGTTGTTTGGATGGTAGTGGTGCGGGTGGTCATGAGCTGGA
GGTCCAACCTGCGACAGCGAGGATGAATATGGCCGAGAAAGATGCGCAGC
AGGCAATTCGCAAGTCCTTAGTCGAGCTTCGGGTGTTGTTGCAACAAATG
CGGCTGATGAGCGACCAGCGCCAACAAGGGAGTGCTGTTGAAGCCGTCAG
GCGATTCCAGCAGGAGCACGAGCAGCAACAGCAGCTGAGAGAGGGTGCCG
AAGCCTCGTCCTCCACCTCTTCCTCCGACTTGTTTGGTCTAGACTATGAG
ATGAAGCGCATGGAGCAACTGCAGGCCTGGCTCTTGTCGTCGCAGGGTGT
ACTAAGGTGCCTTCATAACCAAGTTCTCGAGGTACTTAACCGGGCGCAGC
TCCAACCTTCCCGCTCCTCCTCTCCACAGACGTCAGCAGAGACAGGGCCA
ACAGGGTCGGAGATATTCCCGGCCGGGAATGAGAAGAAGGCGATTAGCAC
GGAAATGGAGGAGCATGTAAGTGGAAAGAAGAAGCGCAACAAGCATGTGA
GGCAGGAGGGAGATTACGTGAACGATGTGGAGGAACATTCGGATTTCGAG
CGTCGGCTACGGGCATCAGGCGAGTCGTTGAAAGAGTTAGAGAAGGATTT
AAGTCTGCGGTTGGAGGATGTGGGATATGCTGTCTCGATTTTGTGTCAAA
TGAAGGGGAAAGCTGAAGCGAGGGAGATGGGGCAGCAGGAAGAGACGCAG
CGGCAGACACACGGCAAGGTAGTGGAGGGGCAGGAGCAAGAGCAGGAGAA
AGGGAGCAAGAGCTAGATTCTGGGCAAGAATTGAAGGTGAGTCAAATCAA
AAAAGAGGAAATGGGAGATGTATGACCGGACAGGCCAGGGGGGGCCTGAA
AAATGACTTGCAAGGTCCCCTCTTTAACAGGCCTAAAAACATTCGTCCAT
GGAAAATACATGAAAAATGCATGGGCTTCTAGCAGGAGAGAGTTCAAAAT
GTGAAGGAAAGGAA
back to top

protein sequence of NO07G03260.1

>NO07G03260.1-protein ID=NO07G03260.1-protein|Name=NO07G03260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=723bp
MEAAISPPAIPSLPAFRHTSAEEGGPLKRRESKVLPHSPTCTQCHAELQP
SVRWHPIIPVPLCVGCYVSATQTIHAFYRRHQQQAWLDRQSETRSQCTGR
PESAATTSAVTAAGTASVCSEGPTISNERSTSTSTTTSSNSQAPITVCIW
CLRLVQDVEAGSSVLRCGQQSSPKHPSHVVFCQTCLGSYFNAPTVEHWSM
QSKEGVWTCLICDKTPLLELAWEEGWGLPHYPHDLRLSAEIQDVLAKAFA
VPHPRQREITMMSVAHSADENGSETTSEASRKRLRLAKSPTTNSPNLPPF
LVPLPAQQQEQPQQQQQYHHAQSQPHRPPQRQPQEEENKEHRQKGSPFAW
QSFLAECEGDATLIVLVEQTQQALSLITRLWREAAVQVAAREDILDMGPG
LTRNMMLMQQGRVAEGEGLTRRPTIDYMPSGTDRPETGETDKRSNSSSRS
GGSSSCLDGSGAGGHELEVQPATARMNMAEKDAQQAIRKSLVELRVLLQQ
MRLMSDQRQQGSAVEAVRRFQQEHEQQQQLREGAEASSSTSSSDLFGLDY
EMKRMEQLQAWLLSSQGVLRCLHNQVLEVLNRAQLQPSRSSSPQTSAETG
PTGSEIFPAGNEKKAISTEMEEHVSGKKKRNKHVRQEGDYVNDVEEHSDF
ERRLRASGESLKELEKDLSLRLEDVGYAVSILCQMKGKAEAREMGQQEET
QRQTHGKVVEGQEQEQEKGSKS*
back to top
Synonyms
Publications