NO07G03250, NO07G03250 (gene) Nannochloropsis oceanica

Overview
NameNO07G03250
Unique NameNO07G03250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2761
Alignment locationchr7:898277..901037 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:898277..901037 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G03250 vs. NCBI_GenBank
Match: EWM27055.1 (hypothetical protein Naga_100056g22 [Nannochloropsis gaditana])

HSP 1 Score: 282.0 bits (720), Expect = 3.100e-72
Identity = 209/454 (46.04%), Postives = 240/454 (52.86%), Query Frame = 0 
Query:    3 CGSFTVEQETPVATHHHSQQSSLNATGFAPKQXXXXXXXXXXPQRRPSSSVGHLQALRNASSSKKNAYPLTPVPSPCARFQHQNHHQQPMQDENASPVEHGSGSSMPCSNISXXXXXXXXXXXXSGAKKVFAPRINVRLMPQNSATAARVRQAGYNPKLELSTPLGKRVGFFIDHLASKWSDVPGIASLSLRLAVSPTQQLEEHVALRSLSAYFAAAKMVDAA-----TGAGGAT---PSAVLQLHYVLRQDM---------------MNEWHPEENSLFDAFAASGLDQLPSS-APTAPSIYVTRTAVDTLVYRPQXXXXXXXXXXXXXVSLTTGDAFNRNETFVNAATLVISTPAPIKPSPFSSSSS-----------SFESSGDSSVTQAGHP---GSGKKRRRIRPTLLPPGEVVATSPSFLQAQCGIGSLTSESSRQSSFSNSGDDSQQ 419
            CG     QETP A HH  +           +Q          P R+       +Q +        N +  TP P P   F     HQ  + DENA P+E G+ +    S               S  KK  APR+NVRL+PQNS TAARVR AGYNPKLELSTPL KRVGFF+ HLA KWS+V GI SLSLRL VSP +QLEEHV+LRSL +YF  A  + A       GAG  T   PSA+LQLHY+L +DM                + W PEENSLFDAFAA+GLDQLP +     P                 XXXXX         SLT+G A NRN+TFVNAAT+ I TPAP+K    S  SS                 D S +  G     G  KKRRRIRPTLL  G+ V+TSPSF  A CGIGS TSESSRQS FSNSGDDS Q
Sbjct:   47 CGKTATVQETPDAAHHQVEPVMTAGRAIFGEQ-----DPSSVPLRKAHFGTAGVQLVNQG----VNLHQTTPSPRP---FHPYLQHQ--IFDENAQPIERGASTVTRHS--------PSASHPGSSLKKAAAPRVNVRLVPQNSRTAARVRNAGYNPKLELSTPLSKRVGFFLGHLAKKWSNVSGINSLSLRLVVSPARQLEEHVSLRSLESYFTTATKMAAGPSPTXXGAGAVTPSSPSAILQLHYLLVEDMECDHNPAASHTTPARESPWGPEENSLFDAFAATGLDQLPCAILSDLPHSLPXXXXXXXXXXXXXXXXXXEPKKRRKRASLTSGVASNRNDTFVNAATVEICTPAPVKQRATSFCSSVSXXXXXXXXXXXXXXXDRSRSVVGPKPALGQEKKRRRIRPTLLSAGQAVSTSPSFTMAHCGIGSFTSESSRQSCFSNSGDDSGQ 478
The following BLAST results are available for this feature:
BLAST of NO07G03250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27055.13.100e-7246.04hypothetical protein Naga_100056g22 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000534NSK000534Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03250.2NO07G03250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G03250.1NO07G03250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581091gene_2659Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100056g22gene3502Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03250.2NO07G03250.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G03250.1NO07G03250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03250 ID=NO07G03250|Name=NO07G03250|organism=Nannochloropsis oceanica|type=gene|length=2761bp
AAAAAGGTAAGCAAGCAAAGTACTGCTATTCGTCGACGCGCGCGCCTCTC
TCGTGGGATTTACTTCCCTCCCTTGTCATTTTCTTTGCTCCACACGCTCA
GTGATGCAAGATCTCCTCCTTTAATGAAGGACGCAGCAATGCGTTTCCGC
ATACCGTGTTCTAAGCACGATGCCTCGCGTCCAACTCCCTGATTCGACTT
CCCTCCCTGCCCGACGACCGTCAAAATCATCCCCACAACCCACAGCTCGT
CAAGCACTTTAGCGCGATTCCCATGACCACATTTGAACGCAGTACGTCTT
GGAACTCGACGAAAGgtacgtgtgttccccatgcatgagttgacgtggca
ttgtctcacctctttttaccgacagcattgccacctaaggtcttttccct
cccgttttccgtgtgttccgactgcccttctgttcgccacgccacaccca
ggttttccgcgcctttggctcaccttcccaacaaccgtacccacccaaca
acacagACGACGCTTTTGGCTTGGAATTCGAATTCGGTGACCTGCTGGTG
GATACGGACCACTCCCACTCGTTGATGGAAGTGACGGCCATGGTGAGTGC
GGGCACGGGTTCAGGAGGAGTTGAGAATTGCAAGTATGACGCGCAAGGGT
ATACGCAACCAATTGGGAATGCTGCGACACCAAACCTTACACTGGAATCA
TGTTGCTAACATTGTCTCTTTGCGGGACTTGAGCCCACACTCTCAGTTGA
GCGGCGAGCACGTGGCGGGAAAATAGAACCCACTTTGGAAGATTTCTTCC
CTTATTCATTCATCTGTCCGCTCACCTATGTGACACGAAACTCTCCTATC
TACCCACAACCACAGCTTGAGCAGGTCGACGGCATGCCCTGTGGATCCTT
CACCGTGGAGCAAGAAACACCGGTGGCAACGCACCATCACTCCCAACAAT
CTAGCTTGAACGCCACTGGCTTCGCCCCCAAGCAGCAGCAAATGCAGCAA
CAAACACCACAAGCCCCACAACGGAGACCAAGCAGCAGCGTAGGTCACCT
GCAGGCGTTGAGGAATGCCTCCTCCTCCAAGAAAAACGCCTACCCTCTCA
CTCCCGTGCCTTCTCCTTGCGCGCGATTCCAGCATCAAAATCACCACCAA
CAACCCATGCAGGACGAGAATGCCTCTCCGGTTGAGCATGGCAGCGGAAG
CAGCATGCCATGCAGCAACATTTCCTCGTCTCATCATGCGGGAGGTAGCA
CCACCAGCAACAGCGGTGCGAAGAAGGTTTTCGCCCCGCGGATCAACGTC
CGTCTCATGCCCCAAAACTCCGCGACTGCCGCACGGGTCCGGCAAGCCGG
GTACAACCCCAAGCTAGAGCTTTCTACGCCCTTGGGCAAGCGCGTAGGTT
TTTTCATCGACCATTTGGCCTCGAAATGGTCCGACGTCCCGGGCATCGCC
TCCCTGTCGTTGCGTTTAGCCGTCTCCCCCACCCAACAGCTGGAGGAGCA
CGTGGCCTTGCGTTCTTTGAGCGCATACTTTGCCGCGGCTAAGATGGTGG
ATGCTGCCACGGGTGCGGGTGGGGCGACGCCGTCGGCGGTGCTACAGTTG
CACTATGTGCTGCGGCAGGATATGATGAATGAGTGGCACCCTGAGGAGAA
TTCGCTTTTTGACGCCTTCGCTGCCTCAGGTCTGGACCAGCTGCCGAGCT
CTGCTCCTACCGCCCCCTCAATCTATGTCACTAGGACCGCCGTCGATACT
CTGGTTTATCGACCGCAACAGCAAGAGCAAGATCAGCAGAAGAAGCGGCG
CAAGCGCGTGTCGCTCACCACGGGAGATGCCTTCAATCGGAACGAGACCT
TTGTCAACGCGGCCACGCTTGTCATCTCCACACCGGCTCCCATCAAGCCC
AGCCCTTTCTCCTCCTCCTCCTCCTCCTTTGAGTCGTCGGGCGACAGCAG
CGTAACGCAAGCCGGGCACCCGGGGTCAGGAAAAAAGCGCCGCCGCATCC
GCCCAACGCTGCTGCCGCCGGGAGAAGTGGTGGCTACAAGTCCTAGCTTT
TTGCAGGCACAGTGTGGGATTGGGAGCCTCACCTCCGAGTCATCTCGTCA
GTCATCGTTTTCCAATTCGGGAGATGACTCGCAGCAATAGAGAGCGGAAG
GAAGAGGAGAGGAGGGTTGAGGAGGGGAGCGAGTCATGATTTTTTGTGCT
AAATCATGGTCACGAGAATCAGCACTTGTTTTAAAAGAAAGGTGACAGGG
GGAAGCGGATTAGGAAGAAGAAGAGGATTTGATTTGTGCAGGCACAAATC
TGGCAATCAAGCAAGAATAAAACTGAAGCGCACGCTAAAAGAAAGATGTG
TGTGCTGCTGTGTATGAATGTATCATGAGAGATTTCAAAACAATGTGATA
AGATAAGAGATTGCGTGTACACCAACACGCACACACACACACACACGGAT
ACATATAAACCAACCCACTCCCACATACGATGAGAGAAGGAGAATGGAGA
GATAGAGAGATAAATGACTTATTCATCCGTAGAGAGGAACAGAATATAAA
TGAAAGTACCAGCACCCTTCATATGTCTTTTGAAACCAATAGTCAGTCAT
TCATGTCATTTCTGCATCGTCATTGTCATACAATAGTGCTCACATCCCCG
TCATCTCATCATCGGCAGCGATACCAAAAACAATAAAGCACGCATCATGA
GCACCCGCACACATTGATATAGAAGAAGGGTAAAACGAAAGCGGAAGGCG
CTGCGTTTGAT
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protein sequence of NO07G03250.2

>NO07G03250.2-protein ID=NO07G03250.2-protein|Name=NO07G03250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MPCGSFTVEQETPVATHHHSQQSSLNATGFAPKQQQMQQQTPQAPQRRPS
SSVGHLQALRNASSSKKNAYPLTPVPSPCARFQHQNHHQQPMQDENASPV
EHGSGSSMPCSNISSSHHAGGSTTSNSGAKKVFAPRINVRLMPQNSATAA
RVRQAGYNPKLELSTPLGKRVGFFIDHLASKWSDVPGIASLSLRLAVSPT
QQLEEHVALRSLSAYFAAAKMVDAATGAGGATPSAVLQLHYVLRQDMMNE
WHPEENSLFDAFAASGLDQLPSSAPTAPSIYVTRTAVDTLVYRPQQQEQD
QQKKRRKRVSLTTGDAFNRNETFVNAATLVISTPAPIKPSPFSSSSSSFE
SSGDSSVTQAGHPGSGKKRRRIRPTLLPPGEVVATSPSFLQAQCGIGSLT
SESSRQSSFSNSGDDSQQ*
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protein sequence of NO07G03250.1

>NO07G03250.1-protein ID=NO07G03250.1-protein|Name=NO07G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MTTFERSTSWNSTKDDAFGLEFEFGDLLVDTDHSHSLMEVTAMLEQVDGM
PCGSFTVEQETPVATHHHSQQSSLNATGFAPKQQQMQQQTPQAPQRRPSS
SVGHLQALRNASSSKKNAYPLTPVPSPCARFQHQNHHQQPMQDENASPVE
HGSGSSMPCSNISSSHHAGGSTTSNSGAKKVFAPRINVRLMPQNSATAAR
VRQAGYNPKLELSTPLGKRVGFFIDHLASKWSDVPGIASLSLRLAVSPTQ
QLEEHVALRSLSAYFAAAKMVDAATGAGGATPSAVLQLHYVLRQDMMNEW
HPEENSLFDAFAASGLDQLPSSAPTAPSIYVTRTAVDTLVYRPQQQEQDQ
QKKRRKRVSLTTGDAFNRNETFVNAATLVISTPAPIKPSPFSSSSSSFES
SGDSSVTQAGHPGSGKKRRRIRPTLLPPGEVVATSPSFLQAQCGIGSLTS
ESSRQSSFSNSGDDSQQ*
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Synonyms
Publications