NO07G03220, NO07G03220 (gene) Nannochloropsis oceanica

Overview
NameNO07G03220
Unique NameNO07G03220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1856
Alignment locationchr7:888597..890452 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:888597..890452 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO07G03220 vs. NCBI_GenBank
Match: EWM27065.1 (hypothetical protein Naga_100056g28 [Nannochloropsis gaditana])

HSP 1 Score: 324.3 bits (830), Expect = 4.100e-85
Identity = 162/238 (68.07%), Postives = 187/238 (78.57%), Query Frame = 0
Query:   74 MRRLLLVCLGGLVGTTSYFLPFSFNQYAIARASELAVRKAQQQSITTKAHDLLNDLPELSDSRLAGWRLKKGGANPTADGEAGAVQAGQSVTAEESTVVKAARAVDPSLPQQYDVVEYPIPTHAHGLIENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRY-EGQEG--LVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCGPPPGAEEE 309
            MR   L+ LGGLVG +SYFLPFSFNQYA ARA+E+A RKAQQQSI TKAHDLL+DLPEL+DSRLAGWRLKKG       GE G      S  + E T     R  +   PQQYDVVEYP+P+HAHG+++ D RVRGVGVLLSNNRDRLDA  LPA+K+DLCQ+EPLTLDPEG++  G EG    VW+KDELEPRVF AY+DL+K+ SKQNGMADKWRRW+L+E L+ GCGPPPGAEEE
Sbjct:    1 MRNTFLLLLGGLVGVSSYFLPFSFNQYATARANEIATRKAQQQSIATKAHDLLDDLPELTDSRLAGWRLKKGA---HGSGETGVEGDSASAASMEDTQAIVDRGTESFSPQQYDVVEYPLPSHAHGILDGDDRVRGVGVLLSNNRDRLDAASLPAEKIDLCQVEPLTLDPEGQWGSGLEGGEQQVWRKDELEPRVFVAYADLRKITSKQNGMADKWRRWILEEPLSEGCGPPPGAEEE 235          
BLAST of NO07G03220 vs. NCBI_GenBank
Match: CBN78732.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 107.1 bits (266), Expect = 1.000e-19
Identity = 68/176 (38.64%), Postives = 94/176 (53.41%), Query Frame = 0
Query:  128 DLPELSDSRLAGWRLKKGGANPTADGEAGAVQAGQSVTAEESTVVKAARAVDPSLPQQYDVVEYPIPTHAHGLIEN---DGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQEGLVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCG 301
            D+P ++DSRLAGWR+    A  TA  +  AV         +S       A +   P   DVVEYP+      L++N   DGR +GV V++S N+ R DA  LP D +D  +++ L  D +   EG     VW  DELE   FA   ++K +KS  NG  DKW+RW + +EL+ GCG
Sbjct:   67 DVPGIADSRLAGWRVGSKQAATTATEDTAAV---------DSDADSEGGAGESGEPGCGDVVEYPLT----DLVKNESTDGREKGVAVIVSINKLRNDAWKLPEDILDKAELQVLCPDLDSEEEG-----VWMADELETCAFAKLGEMKVLKSSFNGAMDKWKRWTISDELSEGCG 224          
BLAST of NO07G03220 vs. NCBI_GenBank
Match: GAQ85839.1 (DnaJ heat shock family protein [Klebsormidium nitens])

HSP 1 Score: 82.0 bits (201), Expect = 3.500e-12
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 0
Query:  180 PSLPQQYDVVEYPIPTHAHGLIENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQEGLVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCGPPPGAEEEIM 311
            P+  Q  DVVE+P+ T A   + NDGR +GVG ++  N DR D + L  + + LC++E L          ++G   W  D +E   FA   +L+ ++S+ + ++D W+  +LD EL+PGCG P  AEE I+
Sbjct:  147 PTFAQNGDVVEFPLSTAARERM-NDGREKGVGFIVGRNIDRGDKHKLSPENLTLCEVEVLW--------QEDGDDRWTVDPMESSAFADLLELRVLRSEFDRLSDSWK--ILD-ELSPGCGSPQYAEEVIL 265          
BLAST of NO07G03220 vs. NCBI_GenBank
Match: XP_005648443.1 (DnaJ-domain-containing protein [Coccomyxa subellipsoidea C-169] >EIE23899.1 DnaJ-domain-containing protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 79.7 bits (195), Expect = 1.800e-11
Identity = 51/137 (37.23%), Postives = 72/137 (52.55%), Query Frame = 0
Query:  175 ARAVDPSLPQQYDVVEYPIPTHAHGLIENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQEGLVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCGPPPGAEEEIMM 312
            A+  D  LPQ  DVVEYP+       ++ DGR  GVG+++  N DR DA  LP D++DLC+IEPL  +  G          W  D+L    FA   +L+K+         ++  WV++  L+ GCG P    EEIM+
Sbjct:  260 AQVADDGLPQFGDVVEYPLREIEMRELQ-DGRTAGVGLVVGRNMDRGDAKKLPPDQLDLCEIEPLRQEETGSER-------WFPDDLGIPSFARLGELRKLPVLD--YDGRYDIWVINAPLSEGCGGPE-LPEEIML 385          
BLAST of NO07G03220 vs. NCBI_GenBank
Match: XP_024361532.1 (uncharacterized protein LOC112275399 [Physcomitrella patens] >PNR30376.1 hypothetical protein PHYPA_026692 [Physcomitrella patens])

HSP 1 Score: 74.3 bits (181), Expect = 7.400e-10
Identity = 53/170 (31.18%), Postives = 87/170 (51.18%), Query Frame = 0
Query:  141 RLKKGGANPTADGEAGAVQAGQSVTAEESTVVKAARAVDPSLPQQYDVVEYPIPTHAHGLIENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQEGLVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCGPPPGAEEEIM 311
            + +KG A  +A     A ++G + T E    V    A      Q  DVVEYP+ + A      D R++GVG+++S N DR D + L  + + L +IEPL  +P           VW+ D +E   FA+  DL+ ++++ N + D+   W++ ++L+  C  P  AEE I+
Sbjct:  116 KTRKGDARSSA-----AARSGSTYTPENGESVCGTEA------QNGDVVEYPL-SDAIKAQHQDDRLKGVGLVVSRNIDRGDRDKLSVENLTLVEIEPLYREPNSS--------VWRADPMEGAAFASLPDLRILRTEFNRVTDE---WIVLDDLSLDCDSPTYAEEIIL 262          
BLAST of NO07G03220 vs. NCBI_GenBank
Match: PTQ48234.1 (hypothetical protein MARPO_0006s0238 [Marchantia polymorpha])

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-9
Identity = 45/124 (36.29%), Postives = 67/124 (54.03%), Query Frame = 0
Query:  187 DVVEYPIPTHAHGLIENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQEGLVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCGPPPGAEEEIM 311
            DVVEY +   A      DGR++GVG+++S N DR D + LP + VDL ++EPL  + +           W+ D +E   FA+   L+ ++S      D WR   + +EL+P CG P  AEE I+
Sbjct:  159 DVVEYYLSDAAKAQ-HQDGRLKGVGLVVSRNIDRGDRHKLPLECVDLVELEPLYKEVD--------CEEWRADPMEGPAFASMPTLRILRSDYERTPDFWR---IHDELSPDCGSPEYAEEVIL 270          
BLAST of NO07G03220 vs. NCBI_GenBank
Match: PRW59130.1 (dnaJ-like protein subfamily B member 5-like [Chlorella sorokiniana])

HSP 1 Score: 72.8 bits (177), Expect = 2.100e-9
Identity = 43/123 (34.96%), Postives = 60/123 (48.78%), Query Frame = 0
Query:  188 VVEYPIPTHAHGLIENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQEGLVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCGPPPGAEEEIM 311
            VVEYP+       ++ DGR  GVG+L+  N DR DA  LP   +DLC+IEPL        + + G   W  DEL P  F     L+ +    +    ++  W +   L+ GCG P   EE I+
Sbjct:  266 VVEYPLSQQQRDELQ-DGRTHGVGLLVGRNCDRGDAAKLPQQVLDLCEIEPLR-------QEEPGSTRWVPDELAPAAFPRLGGLRPI--PVDAFDQRFDVWTITAPLSEGCGGPELPEEVIL 378          
BLAST of NO07G03220 vs. NCBI_GenBank
Match: PSC75282.1 (chaperone -like [Micractinium conductrix])

HSP 1 Score: 65.1 bits (157), Expect = 4.500e-7
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 0
Query:  182 LPQQYDVVEYPIPTHAHGLIENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQEGLVVWQKDELEPRVFAAYSDLK 274
            LP    VVEYP+P      ++ DGR  GVG+L+  N DR DA  LP + +DLC++EPL  +  G          W  DEL P  +    +L+
Sbjct:  388 LPTAGTVVEYPLPAVVQAELQ-DGRSHGVGLLVGRNCDRGDARRLPEEALDLCEVEPLRQEEAGSDR-------WVPDELSPSAYVRLGELR 471          
The following BLAST results are available for this feature:
BLAST of NO07G03220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 8
Match NameE-valueIdentityDescription
EWM27065.14.100e-8568.07hypothetical protein Naga_100056g28 [Nannochlorops... [more]
CBN78732.11.000e-1938.64conserved unknown protein [Ectocarpus siliculosus][more]
GAQ85839.13.500e-1236.64DnaJ heat shock family protein [Klebsormidium nite... [more]
XP_005648443.11.800e-1137.23DnaJ-domain-containing protein [Coccomyxa subellip... [more]
XP_024361532.17.400e-1031.18uncharacterized protein LOC112275399 [Physcomitrel... [more]
PTQ48234.11.300e-936.29hypothetical protein MARPO_0006s0238 [Marchantia p... [more]
PRW59130.12.100e-934.96dnaJ-like protein subfamily B member 5-like [Chlor... [more]
PSC75282.14.500e-738.04chaperone -like [Micractinium conductrix][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03220.1NO07G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581073gene_2654Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100056g28gene3497Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03220.1NO07G03220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03220 ID=NO07G03220|Name=NO07G03220|organism=Nannochloropsis oceanica|type=gene|length=1856bp
AGAGAAAGGTCTCGAATGTTCGCCTCGTCTCTTTTGTTGTGGTGAGTTGT
AGGAGGGTATGCATATATATATGAATGTATATTGTATATTGGTATATTGG
GAGGGGAGTTACTGTAGGCTCCAGCCTCTTCACATACATTTTAGTTCTGG
GATATTTGCCAATTTACGCAATCCAAAAGGATATTAAAAGCGCCTCTTTG
TACGTCGAAAGGGGAAAGAGACTGGGGGTGTGGAGGGAGGGGAAGGGAAG
CCGTAAAGGGTGTGGGGAGGTCAAGTCGTGTCCATTTCCCCATCTCTATC
GACAAGCATCCTTGAGAAGCTCTGGAACCCTTAATAGTCTAAATCTTATC
ACCACGCACATTACTCGGTGTATGCACGCAGATAACTCTATTGCTCTGTT
GCTCTCCATTTTGGAGCTGTGTGAGGCCCATCACATGGTTGCTTGGCGCC
GAACTTGACTTTGACCATCCTTTGACAGCCTTGGCTAGGGTCGATTTAGC
CAACACAACATGAAGATGTCAAAGGTGTTGTTCTGGAAGTCTCTCCTGTT
CATACTTGTGGTAAGCGTGCCAGAGGCGCGAGGTGCTGGTCCACCCACGA
GAGCTGCTGGCCTGGCGGCGTTGTGCTCTCCAGCTGCAACTCAGTACGCA
CGCCGTTTCAAGTTGTTTGCCTCAACTCACACCGCCCTGCCCCCTCCAAT
CTCACACCACTTCCTCATTTTTACAGTGATGCGGCGGCTACTGTTGGTGT
GCCTTGGAGGCCTGGTGGGTACGACTTCCTATTTCTTGCCCTTCTCGTTT
AACCAGgtacgtgcacagagaccgagagacgattggctagttgtagctgt
tctcagtcgccgctgctgctttgtggtgcacagcagcagcgaccttgttc
tgaaaacattagaggagtgtataaaagagaatggggacactaccttttgt
ggtggtgtgatttggggtagcgctcgagtgttgagcacaggtcgaggggt
gagagggggatgccaatggtgccccctgcgctgcaacaaccaccctggac
atgggcacatcaaggctacccaaacatccggagtcaaaatgagcaaatat
agcaaaaagagggaaacggattcgcttggacaagccattctgcgtccttt
ccacgcatcatgaaccctcctcacttctccctctcccaaccctccacccc
acacgacacgacagTACGCGATCGCCCGCGCCAGCGAGCTCGCCGTTCGC
AAGGCCCAGCAACAGAGCATCACCACCAAAGCACACGACCTTCTCAATGA
CCTCCCAGAGCTGAGCGACTCAAGATTGGCGGGGTGGCGTCTGAAGAAAG
GTGGAGCCAACCCCACAGCCGACGGAGAAGCCGGCGCAGTGCAGGCAGGG
CAATCAGTTACGGCAGAAGAATCAACGGTAGTCAAAGCCGCGCGAGCTGT
CGATCCATCATTACCACAGCAATACGACGTGGTTGAGTACCCGATCCCCA
CGCACGCTCACGGCCTCATCGAAAACGACGGGCGGGTGCGAGGGGTAGGA
GTGCTTCTGAGCAACAACCGTGATCGTCTCGACGCCAATCTCCTTCCAGC
CGATAAAGTGGACTTATGTCAAATCGAGCCCTTGACACTTGATCCAGAAG
GACGATATGAGGGCCAAGAGGGATTGGTGGTCTGGCAGAAGGACGAGCTT
GAACCGCGTGTATTTGCCGCCTACTCGGACTTAAAGAAAGTGAAGAGCAA
GCAAAACGGTATGGCGGACAAGTGGCGTCGGTGGGTGCTGGACGAGGAAT
TGACCCCGGGTTGTGGACCACCTCCGGGCGCAGAGGAAGAAATCATGATG
TTGTAA
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protein sequence of NO07G03220.1

>NO07G03220.1-protein ID=NO07G03220.1-protein|Name=NO07G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=313bp
MKMSKVLFWKSLLFILVVSVPEARGAGPPTRAAGLAALCSPAATQYARRF
KLFASTHTALPPPISHHFLIFTVMRRLLLVCLGGLVGTTSYFLPFSFNQY
AIARASELAVRKAQQQSITTKAHDLLNDLPELSDSRLAGWRLKKGGANPT
ADGEAGAVQAGQSVTAEESTVVKAARAVDPSLPQQYDVVEYPIPTHAHGL
IENDGRVRGVGVLLSNNRDRLDANLLPADKVDLCQIEPLTLDPEGRYEGQ
EGLVVWQKDELEPRVFAAYSDLKKVKSKQNGMADKWRRWVLDEELTPGCG
PPPGAEEEIMML*
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Synonyms
Publications