NO07G03180, NO07G03180 (gene) Nannochloropsis oceanica

Overview
NameNO07G03180
Unique NameNO07G03180
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1242
Alignment locationchr7:881310..882551 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:881310..882551 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO07G03180 vs. NCBI_GenBank
Match: EWM27052.1 (expressed unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 409.1 bits (1050), Expect = 1.700e-110
Identity = 241/428 (56.31%), Postives = 287/428 (67.06%), Query Frame = 0
Query:   15 EGMLPLHPHPQRHSITQLQWVLQMAHSAEPADQQKAAMELNIMIEGTTLFPLVSFAPMAHSLCRLLPSQDQTVVHYAARAVKTLLLDDALRGQALLVGLPRVLITALHTWQEEVPCLREILGALQTLSWDKHCVKSIVA-----PGTGPGIGRSSISTSASTSSGCDHNEAAMKENSTSTPKLDISSTEERGIADTCTPATSITT-------TSCALLP-------VLALLQACDQEVATLALAITANLCAHSDTLLLAHQDFILAVNEALPNVLQAALSCDRLLRCYGVATLANASANPFLAGRIKELGGVEVVEKIERECLRTNTVTFGGTRVSECCQVALLRLAG-----------SSAGIDSCSKGGKKEGRTLLGMKKFKFKFGNTPALELTLDGSKNRARIVGCLMLWVVGILLVLQPVLRP 413
            E +LP+    Q HS+ +++ ++ +AHS + ADQQKAA +LN +I G   FP++SFAPMAH+LCRLLPS D+TVV++AARA KTLLLDDALRGQA+LVGLP VL+ AL TWQEE PCLREILG+LQTLSWDKH VKS++A      G   G       +  S ++  D       +      K DISSTEER       PA  IT+       T+   LP       +LALLQ  D EV TL+LAI ANLCA+SDT LL HQ FI AV + LP VL+ A +  RLLRCYGVATLANASANP L GR+KELGG  VVEKIE+E L+ NTV FGGTRVSECC+V LLRLAG           S    D     G + GR LL  KKFKFK+GNTP LELTLDG++NR  +V C+ LWVV ILL LQP+LRP
Sbjct:   11 EDVLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLIACLATEYGQSTGKNTEQAGSPGSENAQVDSMGLIPYQRGAVHTKQDISSTEERDAG--LAPAAHITSTQPMMAATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTRVSECCEVVLLRLAGGKHESLGGSVASGNRNDDKLHDGGESGRVLL-TKKFKFKYGNTPTLELTLDGNQNRTTVVICIFLWVVCILLFLQPILRP 435          
BLAST of NO07G03180 vs. NCBI_GenBank
Match: CBN78352.2 (hypothetical protein (Partial), partial [Ectocarpus siliculosus])

HSP 1 Score: 142.5 bits (358), Expect = 2.900e-30
Identity = 100/285 (35.09%), Postives = 143/285 (50.18%), Query Frame = 0
Query:   28 SITQLQWVLQMAHSAEPADQQKAAMELNIMIEGTTLFPLVSFAPMAHSLCRLLPSQDQTVVHYAARAVKTLLLDDALRGQALLVGLPRVLITALHTWQEEVPCLREILGALQTLSWDKHCVKSIVAPGTGPGIGRSSISTSASTSSGCDHNEAAMKENSTSTPKLDISSTEERGIADTCTPATSITTTSCALLPVLALLQACDQEVATLALAITANLCAHSDTLLLAHQDFILAVNEALPNVLQAALSCDRLLRCYGVATLANASANPFLAGRIKELGGVEVVEK 313
            ++  LQ +LQ+A+S +   Q +A M ++ MIE        SF P+ H+L RL  S+ + VV YAAR +K L+L+DALR QA + G+P VL  AL  W+++ PCLREILGALQTL  D   V  +V  G                                                              AL  VL LL   + E+  LA AI AN+ + SD+LLL +++ I  +++++  +L A  S D  +R YG+A LANA A+P LAG  KELG +E++ +
Sbjct:   18 ALPALQKLLQLAYSEDTDQQLQAVMGISKMIERHPA-DASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAG--------------------------------------------------------------ALASVLELLDTSNMELRVLATAIAANVLSFSDSLLLTNEECIDGISDSMGILLDAVKSRDGAIRDYGLAALANACAHPVLAGCAKELGALELLRR 239          
BLAST of NO07G03180 vs. NCBI_GenBank
Match: CBN78350.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 133.3 bits (334), Expect = 1.800e-27
Identity = 96/284 (33.80%), Postives = 142/284 (50.00%), Query Frame = 0
Query:   32 LQWVLQMAHSAEPADQQKAAMELNIMIEGTTLFPLVSFAPMAHSLCRLLPSQDQTVVHYAARAVKTLLLDDALRGQALLVGLPRVLITALHTWQEEVPCLREILGALQTLSWDKHCVKSIVAPGTGPGIGRSSISTSASTSSGCDHNEAAMKENSTSTPKLDISSTEERGIADTCTPATSITTTSCALLPVLALLQACDQEVATLALAITANLCAHSDTLLLAHQDFILAVNEALPNVLQAALS--CDRLLRCYGVATLANASANPFLAGRIKELGGVEVVEKI 314
            LQ +LQ+AH+ +  DQ +AAM ++ M++   + P  SF P+ H+L RL+ S+ Q VV YAAR++K L+LDDALR QA   G+P VL TAL   + +  CLREILGALQTL +DK  V S++  G                                                              AL  VL LL   + E+  L++AI AN+ + SD+LL+ H++ I A  + +  +L    S   + + R   +A LANA  +  LA R K+LG +E++ ++
Sbjct:   23 LQNLLQLAHAGDTDDQAQAAMGISTMVKRVRIEP-SSFGPLCHTLSRLVASEHQAVVAYAARSIKILVLDDALRPQAAAAGIPSVLATALKVREGDTACLREILGALQTLCYDKETVLSVITTG--------------------------------------------------------------ALGSVLELLSTGNLELKILSMAIAANVLSFSDSLLMTHEECIDAFRDRMEALLDPVKSRRFNDMERDLALAALANACGHRVLAERAKDLGAIELLRRV 243          
The following BLAST results are available for this feature:
BLAST of NO07G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM27052.11.700e-11056.31expressed unknown protein [Nannochloropsis gaditan... [more]
CBN78352.22.900e-3035.09hypothetical protein (Partial), partial [Ectocarpu... [more]
CBN78350.11.800e-2733.80expressed unknown protein [Ectocarpus siliculosus][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000541NSK000541Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03180.1NO07G03180.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669208gene_2650Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100056g32gene3493Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03180.1NO07G03180.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03180 ID=NO07G03180|Name=NO07G03180|organism=Nannochloropsis oceanica|type=gene|length=1242bp
ATGGCTACTCCTGTGATCACCAGGTCGGCAGCTGCACTCGAGGAAGGGAT
GCTACCCCTGCATCCACACCCACAGCGCCACTCAATAACTCAACTGCAAT
GGGTCCTGCAGATGGCACACTCGGCAGAGCCCGCAGACCAACAGAAGGCG
GCCATGGAGTTGAATATTATGATTGAAGGCACTACACTCTTTCCCCTGGT
CTCTTTTGCCCCCATGGCCCACTCCTTGTGCCGTCTTCTACCGAGCCAAG
ACCAAACAGTGGTCCACTATGCAGCTCGAGCAGTGAAAACGCTGCTGCTT
GACGACGCATTGAGGGGACAAGCCTTGCTTGTAGGGCTACCCAGGGTACT
CATCACTGCACTGCACACGTGGCAGGAAGAAGTGCCCTGCTTGCGGGAAA
TCTTGGGCGCATTGCAGACCTTGTCATGGGACAAACACTGTGTCAAGAGC
ATTGTGGCGCCGGGGACAGGGCCGGGAATAGGCCGCAGCAGCATCAGCAC
CAGCGCCAGCACCAGTAGCGGCTGCGACCATAATGAGGCTGCGATGAAAG
AAAATAGTACCAGCACACCCAAACTTGATATTAGCAGCACCGAGGAAAGA
GGCATTGCTGACACCTGTACGCCCGCGACGTCAATCACGACTACCTCCTG
TGCGTTGCTCCCCGTCCTTGCTCTACTTCAAGCCTGCGATCAAGAGGTAG
CAACGCTAGCCTTAGCTATCACCGCTAATCTGTGCGCCCATAGCGACACG
CTCCTACTTGCACACCAAGATTTCATTCTTGCCGTCAATGAGGCACTCCC
TAATGTGTTACAAGCCGCGCTGAGCTGTGATCGGTTGCTGCGATGCTATG
GTGTTGCTACACTGGCCAACGCGAGTGCGAACCCGTTTTTGGCCGGGAGG
ATAAAAGAGTTAGGTGGCGTGGAGGTTGTGGAAAAGATTGAGAGGGAGTG
TTTGAGGACGAATACGGTGACGTTTGGGGGGACAAGGGTGAGTGAGTGTT
GCCAGGTGGCTTTGTTGAGATTGGCGGGAAGTAGTGCGGGTATTGACAGC
TGTAGCAAGGGGGGAAAGAAGGAGGGTAGGACGTTGTTGGGAATGAAAAA
GTTTAAGTTTAAGTTTGGGAATACGCCGGCGTTGGAGTTGACGTTGGATG
GGAGCAAGAACCGGGCAAGAATTGTAGGGTGTTTGATGTTATGGGTGGTG
GGAATTTTGTTGGTGTTGCAGCCAGTGCTTAGGCCTAATTAA
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protein sequence of NO07G03180.1

>NO07G03180.1-protein ID=NO07G03180.1-protein|Name=NO07G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MATPVITRSAAALEEGMLPLHPHPQRHSITQLQWVLQMAHSAEPADQQKA
AMELNIMIEGTTLFPLVSFAPMAHSLCRLLPSQDQTVVHYAARAVKTLLL
DDALRGQALLVGLPRVLITALHTWQEEVPCLREILGALQTLSWDKHCVKS
IVAPGTGPGIGRSSISTSASTSSGCDHNEAAMKENSTSTPKLDISSTEER
GIADTCTPATSITTTSCALLPVLALLQACDQEVATLALAITANLCAHSDT
LLLAHQDFILAVNEALPNVLQAALSCDRLLRCYGVATLANASANPFLAGR
IKELGGVEVVEKIERECLRTNTVTFGGTRVSECCQVALLRLAGSSAGIDS
CSKGGKKEGRTLLGMKKFKFKFGNTPALELTLDGSKNRARIVGCLMLWVV
GILLVLQPVLRPN*
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Synonyms
Publications