NO07G03180, NO07G03180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G03180 vs. NCBI_GenBank
Match: EWM27052.1 (expressed unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 409.1 bits (1050), Expect = 1.700e-110 Identity = 241/428 (56.31%), Postives = 287/428 (67.06%), Query Frame = 0 Query: 15 EGMLPLHPHPQRHSITQLQWVLQMAHSAEPADQQKAAMELNIMIEGTTLFPLVSFAPMAHSLCRLLPSQDQTVVHYAARAVKTLLLDDALRGQALLVGLPRVLITALHTWQEEVPCLREILGALQTLSWDKHCVKSIVA-----PGTGPGIGRSSISTSASTSSGCDHNEAAMKENSTSTPKLDISSTEERGIADTCTPATSITT-------TSCALLP-------VLALLQACDQEVATLALAITANLCAHSDTLLLAHQDFILAVNEALPNVLQAALSCDRLLRCYGVATLANASANPFLAGRIKELGGVEVVEKIERECLRTNTVTFGGTRVSECCQVALLRLAG-----------SSAGIDSCSKGGKKEGRTLLGMKKFKFKFGNTPALELTLDGSKNRARIVGCLMLWVVGILLVLQPVLRP 413 E +LP+ Q HS+ +++ ++ +AHS + ADQQKAA +LN +I G FP++SFAPMAH+LCRLLPS D+TVV++AARA KTLLLDDALRGQA+LVGLP VL+ AL TWQEE PCLREILG+LQTLSWDKH VKS++A G G + S ++ D + K DISSTEER PA IT+ T+ LP +LALLQ D EV TL+LAI ANLCA+SDT LL HQ FI AV + LP VL+ A + RLLRCYGVATLANASANP L GR+KELGG VVEKIE+E L+ NTV FGGTRVSECC+V LLRLAG S D G + GR LL KKFKFK+GNTP LELTLDG++NR +V C+ LWVV ILL LQP+LRP Sbjct: 11 EDVLPVQGRKQPHSMIRVKRIVSLAHSQDVADQQKAATDLNTLIGGNAFFPMISFAPMAHALCRLLPSHDRTVVYFAARAAKTLLLDDALRGQAVLVGLPAVLLQALQTWQEETPCLREILGSLQTLSWDKHTVKSLIACLATEYGQSTGKNTEQAGSPGSENAQVDSMGLIPYQRGAVHTKQDISSTEERDAG--LAPAAHITSTQPMMAATTAVTLPSVGRLASILALLQTRDLEVVTLSLAIVANLCAYSDTYLLTHQGFIHAVRDVLPRVLEVAQNQSRLLRCYGVATLANASANPVLLGRMKELGGGAVVEKIEQEDLKANTVAFGGTRVSECCEVVLLRLAGGKHESLGGSVASGNRNDDKLHDGGESGRVLL-TKKFKFKYGNTPTLELTLDGNQNRTTVVICIFLWVVCILLFLQPILRP 435
BLAST of NO07G03180 vs. NCBI_GenBank
Match: CBN78352.2 (hypothetical protein (Partial), partial [Ectocarpus siliculosus]) HSP 1 Score: 142.5 bits (358), Expect = 2.900e-30 Identity = 100/285 (35.09%), Postives = 143/285 (50.18%), Query Frame = 0 Query: 28 SITQLQWVLQMAHSAEPADQQKAAMELNIMIEGTTLFPLVSFAPMAHSLCRLLPSQDQTVVHYAARAVKTLLLDDALRGQALLVGLPRVLITALHTWQEEVPCLREILGALQTLSWDKHCVKSIVAPGTGPGIGRSSISTSASTSSGCDHNEAAMKENSTSTPKLDISSTEERGIADTCTPATSITTTSCALLPVLALLQACDQEVATLALAITANLCAHSDTLLLAHQDFILAVNEALPNVLQAALSCDRLLRCYGVATLANASANPFLAGRIKELGGVEVVEK 313 ++ LQ +LQ+A+S + Q +A M ++ MIE SF P+ H+L RL S+ + VV YAAR +K L+L+DALR QA + G+P VL AL W+++ PCLREILGALQTL D V +V G AL VL LL + E+ LA AI AN+ + SD+LLL +++ I +++++ +L A S D +R YG+A LANA A+P LAG KELG +E++ + Sbjct: 18 ALPALQKLLQLAYSEDTDQQLQAVMGISKMIERHPA-DASSFGPLCHTLSRLAASEHRAVVAYAARGIKLLVLNDALRPQATVAGIPSVLAAALREWEDDAPCLREILGALQTLCCDAATVLPVVDAG--------------------------------------------------------------ALASVLELLDTSNMELRVLATAIAANVLSFSDSLLLTNEECIDGISDSMGILLDAVKSRDGAIRDYGLAALANACAHPVLAGCAKELGALELLRR 239
BLAST of NO07G03180 vs. NCBI_GenBank
Match: CBN78350.1 (expressed unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 133.3 bits (334), Expect = 1.800e-27 Identity = 96/284 (33.80%), Postives = 142/284 (50.00%), Query Frame = 0 Query: 32 LQWVLQMAHSAEPADQQKAAMELNIMIEGTTLFPLVSFAPMAHSLCRLLPSQDQTVVHYAARAVKTLLLDDALRGQALLVGLPRVLITALHTWQEEVPCLREILGALQTLSWDKHCVKSIVAPGTGPGIGRSSISTSASTSSGCDHNEAAMKENSTSTPKLDISSTEERGIADTCTPATSITTTSCALLPVLALLQACDQEVATLALAITANLCAHSDTLLLAHQDFILAVNEALPNVLQAALS--CDRLLRCYGVATLANASANPFLAGRIKELGGVEVVEKI 314 LQ +LQ+AH+ + DQ +AAM ++ M++ + P SF P+ H+L RL+ S+ Q VV YAAR++K L+LDDALR QA G+P VL TAL + + CLREILGALQTL +DK V S++ G AL VL LL + E+ L++AI AN+ + SD+LL+ H++ I A + + +L S + + R +A LANA + LA R K+LG +E++ ++ Sbjct: 23 LQNLLQLAHAGDTDDQAQAAMGISTMVKRVRIEP-SSFGPLCHTLSRLVASEHQAVVAYAARSIKILVLDDALRPQAAAAGIPSVLATALKVREGDTACLREILGALQTLCYDKETVLSVITTG--------------------------------------------------------------ALGSVLELLSTGNLELKILSMAIAANVLSFSDSLLMTHEECIDAFRDRMEALLDPVKSRRFNDMERDLALAALANACGHRVLAERAKDLGAIELLRRV 243 The following BLAST results are available for this feature:
BLAST of NO07G03180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G03180 ID=NO07G03180|Name=NO07G03180|organism=Nannochloropsis oceanica|type=gene|length=1242bpback to top protein sequence of NO07G03180.1 >NO07G03180.1-protein ID=NO07G03180.1-protein|Name=NO07G03180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=414bpback to top Synonyms
Publications
|