NO07G03160, NO07G03160 (gene) Nannochloropsis oceanica

Overview
NameNO07G03160
Unique NameNO07G03160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2528
Alignment locationchr7:875534..878061 -

Link to JBrowse

Properties
Property NameValue
DescriptionVacuolar sorting protein 9
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:875534..878061 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037191VPS9_dom_sf
IPR003123VPS9
Homology
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BLAST of NO07G03160 vs. NCBI_GenBank
Match: EWM27062.1 (Vacuolar sorting protein 9 [Nannochloropsis gaditana])

HSP 1 Score: 354.0 bits (907), Expect = 1.200e-93
Identity = 296/867 (34.14%), Postives = 367/867 (42.33%), Query Frame = 0 
Query:    1 MTTPQPGR------QRPSTLTGLMDALGSLLPHPFQHQQS-YAPSSSLSRYRSLLQTEASRLQAQSYKAARALLALAEASAKEENMLLRTGGRRHLGLWRHHASLRRALLLLEQEQWAQAAGVLIKQEAMVMAWLQKEDEERKVGSDGQQGKEDGERAK-AAEPVLRPPAELLEADEGIKALKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXK-------------------------------------------ILQLRMYLEREFSYLVEDQRYREGRLLDRWLALIQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVINLPVFTPHCIVAFLNYFITNRLLLPYSLPPVLRPALAGLVVSYVFRKARRVVSGYVKGGDILLPSLNQQWREQVQKARNLPPHILGVPDSFLSSLQRADRKEKREGEKVEFLGETTRALTRMGLKLTPLDALDSLLVAVRCLHKEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNGTGGGKEGKKRLTLTPQQSLPADVLFPLLVYALVHADCPDVFSSLYLLRHFASGDENVGEKAYYITTWEAAVAHVLY------RKDE------EKXXXXXXXXXXXXXXXXXXXXCHVSLEELGPCFTAEEHQRGLAYLDEWLASESAMEETMDILEQDGWF 805
            MTTP P        +R S+LT LMDA+GSL PHP QH QS  AP S+++RY S+L+TE SRL  Q+ KA RAL AL + S  E+N LLRTGGR+HLGLWRHH SLRRALL LE EQW QAA +L KQE +V++WL++ D  ++    G +G  + ER +  +  ++RPPAELLEAD G+K LK                                                                                                                                      + + R  +E  F++L+EDQRYREGRLLDRWL L++                                                                                                                                                               +  ++TP CIVAF+NYF+ +RLL+PY+LPP LRPAL GL+ + VFR+ARR  SGYVKGGD + P LN+QWREQVQ AR L    LGVP  +L                     ET R L+ M L +TPL+  ++LL AVRCLH EA                                              G G   G    +     P  SLPADVLFPLLVYALV ++CPD+FS LY+LRHFASG+ +VGE+AYY TT EAAVAH+ +      R+ E       +   XXXXXXXXXXXXXXXXX       LGP F+ EE +RGL +LDEWLA+E+AMEETMDILEQDGWF
Sbjct:    1 MTTPSPSSSTTTRGRRLSSLTELMDAVGSLFPHPVQHMQSMQAPPSAVTRYHSILKTENSRLLGQADKAKRALSALEKTSLTEKNQLLRTGGRKHLGLWRHHTSLRRALLELEHEQWRQAATILQKQELIVLSWLREVDARKEKVKKGPRGTGEQEREEPKSSAIMRPPAELLEADSGVKILKRRRFCLARLCDQAEKAMGKVIGETGWAGAEGGEERRLRLLGLIEEAQALYLDDGDAVDVVHPVRDVTGPESSGISSSTGAYTSRPLLVPPDSSSSPLPCRPSPATSVPPSTQSSVNVPLLPSCSQPGPRQAHGVMGRRRQRVEAAFAFLLEDQRYREGRLLDRWLTLLEESASQSNVSAASRTRGEGQGGLPGAVSALGRSLPTTTTAVSNGSGSPR---------------------------------------------------------------------------------------------------------------DTYLYTPRCIVAFINYFVHDRLLVPYALPPALRPALLGLMQALVFRRARRASSGYVKGGDQVFPELNKQWREQVQAARRLDATALGVPPPYLWGCP---------------FPETARVLSEMALSMTPLEMTEALLRAVRCLHHEAGAAAVKAQREGRLQKLQRAG--------------------------GEGXXXGDREARTAESEPAHSLPADVLFPLLVYALVQSECPDIFSCLYVLRHFASGN-HVGEQAYYCTTLEAAVAHIFWLPVGEERRREGGSHVAAEDETXXXXXXXXXXXXXXXXXXXXXXXXLGPSFSVEEQERGLQFLDEWLAAEAAMEETMDILEQDGWF 714
The following BLAST results are available for this feature:
BLAST of NO07G03160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27062.11.200e-9334.14Vacuolar sorting protein 9 [Nannochloropsis gadita... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000543NSK000543Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03160.1NO07G03160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100056g34gene3491Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03160.1NO07G03160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03160 ID=NO07G03160|Name=NO07G03160|organism=Nannochloropsis oceanica|type=gene|length=2528bp
ATGACAACGCCCCAGCCTGGCCGTCAGCGACCTTCAACCCTTACAGGCTT
GATGGACGCCTTGGGCTCTTTGCTGCCCCATCCTTTCCAACACCAACAGT
CGTATGCCCCATCCTCCTCCCTCTCCCGGTACCGCTCCTTGCTGCAAACG
GAAGCCTCACGCCTGCAAGCACAATCCTACAAGGCGGCCAGGGCCCTCCT
CGCCTTGGCAGAAGCGAGTGCGAAGGAAGAAAATATGCTCTTGAGGACGG
GGGGGCGGCGGCACCTAGGGCTATGGAGACATCATGCCTCGCTTCGACGG
GCATTGCTGTTGCTCGAGCAAGAGCAGTGGGCTCAAGCTGCCGGGGTATT
GATCAAGCAGGAAGCAATGGTGATGGCCTGGCTACAAAAGGAGGACGAGG
AACGAAAAGTAGGAAGTGATGGACAGCAGGGGAAAGAGGATGGAGAGCGG
GCGAAAGCAGCAGAGCCCGTGCTACGACCACCGGCCGAGCTGCTGGAAGC
CGACGAGGGCATCAAGGCGTTAAAAAAACGGCGgtattgcttaacgcagc
tctgtacagatgcagaagaggcaatggatcatcgagggagggtgggagga
ttggagagtgtgggggggggggatttgactcgcatgacgaacgcagGCGG
AAATTGCTACATTTGACCAAGGAAGCGAGTGTGCTTTATGTGAGTGGCGG
TGGAGGAATCGATAACCATGGACAACCGTCATCGCCGCCACCATTGCTTT
CCACGAGAGAATCTTCCTCCTCCGCTTCCTCCTCTTTCAGCTTCTTGACC
TCCTTGTCCTCCTCTCCCGCAACACCCAGCGACCAGCACCAACAACGGAA
ACAGTCCCAATCACTACAAATACAACATCAGCAACGTCGACAAGAGCAAC
AAGACACCAAAATCCTGCAACTCCGCATGTATCTTGAACGTGAATTCTCG
TACCTAGTAGAGGACCAGCGGTACCGCGAGGGCCGCCTCCTCGACCGGTG
GCTCGCCCTCATCCAAGCAGCCGCCAGTCAAAGCAACACTATTGCAGCCG
CTGTTGCGCATCGAAAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAACAAGAACAACA
AGAACAACAACAACAAGAACAACAACAAGAACAACAAGAACAACAACAAG
AAGAACAACAACAAGAACAACGACAAGAACAACGACAACAAGAGCAGCAG
AAGCAACAGCATAAGCACTCTCAGGGTAAGGAGCATCACCAACAGCAGCA
GCGGACTATGCCGAGAAGTAGAAGTGCCTTCTCTCTCTCCTCTTCTGCCT
CTCCTACCACCAATATCTACCCGACGAGCAGTGCCATAAGCAAACACAGT
AGCAAAGACAGAAACAGCAACAACAACCACAACCACAACAACAGCATCAG
CAGCAATAGCAACAGCAGCAACAGTGGTAACAGCCACGTCATCAACCTCC
CTGTATTTACCCCTCACTGCATCGTCGCCTTCCTCAACTATTTTATAACC
AACCGCCTCCTCCTCCCCTACTCCCTTCCTCCCGTCCTCCGCCCTGCCCT
CGCCGGTCTAGTTGTATCATATGTTTTTCGCAAGGCCCGTCGCGTCGTCT
CAGGTTACGTGAAAGGTGGAGATATCCTCCTTCCCTCCCTCAACCAGCAA
TGGCGCGAGCAGGTTCAAAAAGCGAGAAATTTACCTCCACATATCCTAGG
CGTACCCGATTCGTTTCTGTCTTCACTTCAGAGGGCAGATAGGAAGGAAA
AGAGGGAAGGAGAGAAGGTGGAGTTCTTGGGTGAGACAACACGGGCACTG
ACTAGAATGGGATTGAAGCTGACGCCGTTGGATGCGTTGGATTCCTTGTT
GGTAGCTGTGAGGTGCTTACACAAAGAGGCAGCAGTAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGGAGTGGGTGGAGAAAAAGATGGAGAAGGAGGA
GATGGAGGGGATGAAGGAGAGGTAGCTGCGACAGCAGCAGCGTCAGGGAC
AGCAGCAAAAGCAATAGTAGGAAATGGAACAGGAGGAGGGAAGGAGGGAA
AGAAACGCCTAACCTTGACCCCACAACAATCATTGCCGGCTGATGTTCTT
TTCCCCTTGCTGGTCTACGCCTTAGTCCACGCGGACTGTCCCGACGTGTT
TTCGTCTTTGTATTTGTTGAGACACTTTGCAAGTGGTGACGAGAATGTGG
GCGAGAAAGCTTACTATATCACCACCTGGGAAGCTGCAGTTGCGCATGTC
TTGTACAGGAAGGATGAGGAGAAGGCTGGAGAGGGAAGGCGAGGGAGGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTGCCATGTGTCGCTTG
AGGAACTGGGTCCATGTTTCACAGCGGAGGAGCACCAGAGGGGTTTGGCT
TATTTGGATGAATGGTTGGCGTCCGAGAGTGCGATGGAGGAGACGATGGA
CATCTTGGAACAGGACGGGTGGTTTTGA
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protein sequence of NO07G03160.1

>NO07G03160.1-protein ID=NO07G03160.1-protein|Name=NO07G03160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=805bp
MTTPQPGRQRPSTLTGLMDALGSLLPHPFQHQQSYAPSSSLSRYRSLLQT
EASRLQAQSYKAARALLALAEASAKEENMLLRTGGRRHLGLWRHHASLRR
ALLLLEQEQWAQAAGVLIKQEAMVMAWLQKEDEERKVGSDGQQGKEDGER
AKAAEPVLRPPAELLEADEGIKALKKRRRKLLHLTKEASVLYVSGGGGID
NHGQPSSPPPLLSTRESSSSASSSFSFLTSLSSSPATPSDQHQQRKQSQS
LQIQHQQRRQEQQDTKILQLRMYLEREFSYLVEDQRYREGRLLDRWLALI
QAAASQSNTIAAAVAHRKQQQQQQQQQQQQQQQQQQQQQQQQQEQQEQQQ
QEQQQEQQEQQQEEQQQEQRQEQRQQEQQKQQHKHSQGKEHHQQQQRTMP
RSRSAFSLSSSASPTTNIYPTSSAISKHSSKDRNSNNNHNHNNSISSNSN
SSNSGNSHVINLPVFTPHCIVAFLNYFITNRLLLPYSLPPVLRPALAGLV
VSYVFRKARRVVSGYVKGGDILLPSLNQQWREQVQKARNLPPHILGVPDS
FLSSLQRADRKEKREGEKVEFLGETTRALTRMGLKLTPLDALDSLLVAVR
CLHKEAAVAAAAAAAAAAGVGGEKDGEGGDGGDEGEVAATAAASGTAAKA
IVGNGTGGGKEGKKRLTLTPQQSLPADVLFPLLVYALVHADCPDVFSSLY
LLRHFASGDENVGEKAYYITTWEAAVAHVLYRKDEEKAGEGRRGREEEEE
EEEEEEECHVSLEELGPCFTAEEHQRGLAYLDEWLASESAMEETMDILEQ
DGWF*
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Synonyms
Publications