NO07G03130, NO07G03130 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G03130
Unique Name	NO07G03130
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2140
Alignment location	chr7:870458..872597 +

Link to JBrowse

Properties


Property Name	Value
Description	Eukaryotic translation initiation factor 2 subunit 3

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:870458..872597 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding
GO:0016787	hydrolase activity
GO:0008135	translation factor activity, RNA binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR009001	Transl_elong_EF1A/Init_IF2_C
IPR009000	Transl_B-barrel
IPR004161	Transl_elong_EFTu/EF1A_2
IPR015256	TIF2_gsu_C
IPR000795	TF_GTP-bd_dom

Homology

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BLAST of NO07G03130 vs. NCBI_GenBank
Match: EWM27044.1 (eukaryotic translation initiation factor 2 subunit 3 [Nannochloropsis gaditana])

HSP 1 Score: 851.7 bits (2199), Expect = 1.100e-243
Identity = 429/461 (93.06%), Postives = 448/461 (97.18%), Query Frame = 0

Query:    1 MPMPDPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPAEDGVPGNYRAKGSSAPDVFEEDGKVWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIASSLNASAGEG 462
            M +PDPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKI+KC+PAE+GVPGNYRAKGSSAPDVFEEDGK W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQ++QIRKFVAGTVAD+SPIIPISAVKKFNID+VCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVL++GDQIEVRPGIVTKDA+GNVKCVPIFSQITSLFAEHNEL+FAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLP+V+TEVEISYYLLRRLLGVKTQDG K+AKVQKL AKEILMVNIGSTATGGKVLGLRED  +REDYAKI+LTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTI +     A+AGEG
Sbjct:    1 MSVPDPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIYKCDPAEEGVPGNYRAKGSSAPDVFEEDGKTWRLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQHDQIRKFVAGTVADASPIIPISAVKKFNIDIVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLRVGDQIEVRPGIVTKDAKGNVKCVPIFSQITSLFAEHNELDFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPDVYTEVEISYYLLRRLLGVKTQDGGKQAKVQKLAAKEILMVNIGSTATGGKVLGLREDAARREDYAKILLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTINV-----ATAGEG 456

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BLAST of NO07G03130 vs. NCBI_GenBank
Match: XP_009035074.1 (hypothetical protein AURANDRAFT_22992 [Aureococcus anophagefferens] >EGB10259.1 hypothetical protein AURANDRAFT_22992 [Aureococcus anophagefferens])

HSP 1 Score: 677.2 bits (1746), Expect = 3.700e-191
Identity = 348/451 (77.16%), Postives = 386/451 (85.59%), Query Frame = 0

Query:    5 DPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPAEDGVPGNYRAKGSSAPDVFEEDGK--VWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIASS 454
            D S+L+P TPEVIS+QATINIGTIGHVAHGKSTVVKAISGV TVR K ELERNITIKLGYANAKI+K    + G PGN+R+ GSS PD F +      W+L RHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAAVEIMRL NIIILQNKVDLVKP  A  Q+EQI+KFVAGTVAD++PIIPISAV K+N+D VCEYL + IP P RDF S PRLIVIRSFDVNKPGE VE LKGGVAGGSILQGVLK+GD++EVRPGIV KDA+G V C PI+S++ SLFAE N L++AVPGGLIGVGT IDPTLTRADRLVGQVLGL+  LP+VF EVEIS+YLLRRLLGVKT +G K+AKVQKLQ +EILMVNIGSTATGGKVL ++ D+      AKI+LTQPVCT EGEKIALSRRVDKHWRLIGWGQIRRG  + I +S
Sbjct:   27 DVSSLSPATPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKRVDEQPG-PGNFRSFGSSKPDAFTDPATKIAWKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEPCPQPQTSEHLAAVEIMRLENIIILQNKVDLVKPDAALAQHEQIKKFVAGTVADAAPIIPISAVLKYNVDAVCEYLAHAIPTPARDFASLPRLIVIRSFDVNKPGEDVEHLKGGVAGGSILQGVLKMGDEVEVRPGIVKKDAQGTVSCTPIYSKVVSLFAESNALQYAVPGGLIGVGTHIDPTLTRADRLVGQVLGLKAHLPDVFIEVEISFYLLRRLLGVKTSEGSKQAKVQKLQKQEILMVNIGSTATGGKVLAVKADL------AKILLTQPVCTMEGEKIALSRRVDKHWRLIGWGQIRRGARVDINAS 470

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BLAST of NO07G03130 vs. NCBI_GenBank
Match: XP_009519528.1 (hypothetical protein PHYSODRAFT_325378 [Phytophthora sojae] >EGZ24240.1 hypothetical protein PHYSODRAFT_325378 [Phytophthora sojae])

HSP 1 Score: 674.1 bits (1738), Expect = 3.200e-190
Identity = 345/449 (76.84%), Postives = 390/449 (86.86%), Query Frame = 0

Query:    9 LTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPAEDGVP-GNYRAKGSSAPDVF---EEDGKVWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIASS 454
            LTPLTPEVIS+QATINIGTIGHVAHGKSTVVKAISGV TVR K ELERNITIKLGYANAKI++   AE+G   G YRA GSS PD F    +D  VW LQRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAA+EIMRL NIIILQNKVDL+K   A  Q+EQI+KFVAGTVA  +PIIPISAV K+N+DVVCEY+   IP+P RDFTS P+LIVIRSFDVNKPGE VE+LKGGVAGGSIL+GVL++GD+IEVRPGIV+KD EG + CVPIFS+I SL+AE N+L+FAVPGGLIGVGT IDPTLTR+DRLVGQVLGL+G LP VFTE+EI++YLL+RLLGVKTQ+G K +KVQKL   E+LMVNIGSTATGGKVL +++D+      AKI+LT PVCTQEGEKIA+SRR+DKHWRLIGWGQIRRG+ I+IA S
Sbjct:   22 LTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYR---AENGTGIGCYRAFGSSKPDRFTDENDDKTVWVLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEVCPQPQTSEHLAAIEIMRLQNIIILQNKVDLIKEDAAVAQHEQIKKFVAGTVAHDAPIIPISAVLKYNVDVVCEYICRNIPIPKRDFTSKPKLIVIRSFDVNKPGEDVENLKGGVAGGSILEGVLRVGDEIEVRPGIVSKDEEGKMTCVPIFSRIVSLYAEKNDLQFAVPGGLIGVGTHIDPTLTRSDRLVGQVLGLKGSLPHVFTELEINFYLLKRLLGVKTQEGSKASKVQKLSKAEVLMVNIGSTATGGKVLAVKQDL------AKILLTVPVCTQEGEKIAISRRIDKHWRLIGWGQIRRGSRIEIADS 461

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BLAST of NO07G03130 vs. NCBI_GenBank
Match: XP_008613264.1 (eukaryotic translation initiation factor 2 subunit 3 [Saprolegnia diclina VS20] >EQC33141.1 eukaryotic translation initiation factor 2 subunit 3 [Saprolegnia diclina VS20])

HSP 1 Score: 673.7 bits (1737), Expect = 4.100e-190
Identity = 341/453 (75.28%), Postives = 387/453 (85.43%), Query Frame = 0

Query:    5 DPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPA---EDGVPGN--YRAKGSSAPDVF-EEDGKVWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIA 452
            DP TLTPLTPEVIS+QATINIGTIGHVAHGKSTVVKAISGV TVR K ELERNITIKLGYANAKI++  PA    D  P    Y A GSS PD F +E G  W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAAVEIMRL NIIILQNKVDL+KP  A  QYEQ+++FVAGTVA  +PIIPISAV K+NIDVVCEY+V  IP+P RDF S P+LIVIRSFDVNKPG+ VE+L+GGVAGGSILQGVL++GD+IEVRPGI +KD +G V+C PIFS+I SL AEHNEL++AVPGGLIGVGT IDPTLTR+DRLVGQVLGL+G LP++FTE+EI++YLLRRLLGVKT +G K +KVQKL   E+LM+NIGST TG K++ +++D+      AKI+LTQPVCTQEGEKIALSRR+DKHWRLIGWG+IRRG  I IA
Sbjct:   15 DPKTLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYRSEPAPAKADEAPTGPMYSAFGSSKPDRFTDEKGVTWALQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEPCPQPQTSEHLAAVEIMRLQNIIILQNKVDLIKPDAAKAQYEQVKQFVAGTVAHDAPIIPISAVLKYNIDVVCEYIVRNIPIPRRDFVSKPKLIVIRSFDVNKPGQDVENLQGGVAGGSILQGVLRIGDEIEVRPGIYSKDEDGKVQCTPIFSRIVSLKAEHNELQYAVPGGLIGVGTLIDPTLTRSDRLVGQVLGLKGSLPDIFTELEINFYLLRRLLGVKTSEGSKASKVQKLTKAEVLMINIGSTTTGAKIIAVKQDL------AKILLTQPVCTQEGEKIALSRRIDKHWRLIGWGEIRRGVKIDIA 461

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BLAST of NO07G03130 vs. NCBI_GenBank
Match: XP_012200208.1 (eukaryotic translation initiation factor 2 subunit 3 [Saprolegnia parasitica CBS 223.65] >KDO29038.1 eukaryotic translation initiation factor 2 subunit 3 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 673.7 bits (1737), Expect = 4.100e-190
Identity = 341/453 (75.28%), Postives = 387/453 (85.43%), Query Frame = 0

Query:    5 DPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPA---EDGVPGN--YRAKGSSAPDVF-EEDGKVWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIA 452
            DP TLTPLTPEVIS+QATINIGTIGHVAHGKSTVVKAISGV TVR K ELERNITIKLGYANAKI++  PA    D  P    Y A GSS PD F +E G  W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAAVEIMRL NIIILQNKVDL+KP  A  QYEQ+++FVAGTVA  +PIIPISAV K+NIDVVCEY+V  IP+P RDF S P+LIVIRSFDVNKPG+ VE+L+GGVAGGSILQGVL++GD+IEVRPGI +KD +G V+C PIFS+I SL AEHNEL++AVPGGLIGVGT IDPTLTR+DRLVGQVLGL+G LP++FTE+EI++YLLRRLLGVKT +G K +KVQKL   E+LM+NIGST TG K++ +++D+      AKI+LTQPVCTQEGEKIALSRR+DKHWRLIGWG+IRRG  I IA
Sbjct:   18 DPKTLTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYRSEPAPAKADEAPTGPMYSAFGSSKPDRFTDEKGVTWALQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEPCPQPQTSEHLAAVEIMRLQNIIILQNKVDLIKPDAAKAQYEQVKQFVAGTVAHDAPIIPISAVLKYNIDVVCEYIVRNIPIPRRDFVSKPKLIVIRSFDVNKPGQDVENLQGGVAGGSILQGVLRIGDEIEVRPGIYSKDEDGKVQCTPIFSRIVSLKAEHNELQYAVPGGLIGVGTLIDPTLTRSDRLVGQVLGLKGSLPDIFTELEINFYLLRRLLGVKTSEGSKASKVQKLTKAEVLMINIGSTTTGAKIIAVKQDL------AKILLTQPVCTQEGEKIALSRRIDKHWRLIGWGEIRRGVKIDIA 464

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BLAST of NO07G03130 vs. NCBI_GenBank
Match: XP_024572466.1 (eukaryotic translation initiation factor 2 subunit 3 [Plasmopara halstedii] >CEG36097.1 eukaryotic translation initiation factor 2 subunit 3 [Plasmopara halstedii])

HSP 1 Score: 672.5 bits (1734), Expect = 9.200e-190
Identity = 346/449 (77.06%), Postives = 393/449 (87.53%), Query Frame = 0

Query:    9 LTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPAEDGVP-GNYRAKGSSAPDVF--EEDGKV-WELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIASS 454
            LTPLTPEVIS+QATINIGTIGHVAHGKSTVVKAISGV TVR K ELERNITIKLGYANAKI++   AE+GV  G YRA GSS PD F  E D K+ W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAA+EIMRL NIIILQNKVDL+K   A  Q+EQI+KFVAGTVA  +PIIPISAV K+N+DVVCEY+   IP+P RDFTS P+LIVIRSFDVNKPGE VE+LKGGVAGGSIL+GVL++GD+IEVRPGIV+KD EG + CVPIFS+I SL+AE N+L+FAVPGGLIGVGT+IDPTLTR+DRLVGQVLGL+G LP VFTE+EI++YLL+RLLGVKTQ+G K +KVQKL   E+LMVNIGSTATGGKVL +++D+      AKI+LT PVCTQEGEKIA+SRR+DKHWRLIGWGQIRRG+ I+IA +
Sbjct:   22 LTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYR---AENGVGIGCYRAFGSSKPDRFVDENDDKLTWVLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEVCPQPQTSEHLAAIEIMRLQNIIILQNKVDLIKEDVAVAQHEQIKKFVAGTVAHDAPIIPISAVLKYNVDVVCEYICRNIPIPKRDFTSKPKLIVIRSFDVNKPGEDVENLKGGVAGGSILEGVLRVGDEIEVRPGIVSKDEEGKMTCVPIFSRIVSLYAEKNDLQFAVPGGLIGVGTQIDPTLTRSDRLVGQVLGLKGSLPHVFTELEINFYLLKRLLGVKTQEGSKASKVQKLSKAEVLMVNIGSTATGGKVLAVKQDL------AKIVLTVPVCTQEGEKIAISRRIDKHWRLIGWGQIRRGSRIEIADA 461

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BLAST of NO07G03130 vs. NCBI_GenBank
Match: POM58381.1 (Eukaryotic translation initiation factor 2 subunit 3 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 672.5 bits (1734), Expect = 9.200e-190
Identity = 344/449 (76.61%), Postives = 389/449 (86.64%), Query Frame = 0

Query:    9 LTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPAEDGVP-GNYRAKGSSAPDVF---EEDGKVWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIASS 454
            LTPLTPEVIS+QATINIGTIGHVAHGKSTVVKAISGV TVR K ELERNITIKLGYANAKI++   AE+G   G YRA GSS PD F    +D   W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAA+EIMRL NIIILQNKVDL+K   A  Q+EQI+KFVAGTVA  +PIIPISAV K+N+DVVCEY+   IP+P RDFTS P+LIVIRSFDVNKPGE VE+LKGGVAGGSIL+GVL++GD+IEVRPGIV+KD EG + CVPIFS+I SL+AE N+L+FAVPGGLIGVGT IDPTLTR+DRLVGQVLGL+G LP VFTE+EI++YLL+RLLGVKTQ+G K +KVQKL   E+LMVNIGSTATGGKVL +++D+      AKI+LT PVCTQEGEKIA+SRR+DKHWRLIGWGQIRRG+ I+IA S
Sbjct:   22 LTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYR---AENGTGIGCYRAFGSSKPDRFVDENDDKTTWVLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEVCPQPQTSEHLAAIEIMRLQNIIILQNKVDLIKEDAAVAQHEQIKKFVAGTVAHDAPIIPISAVLKYNVDVVCEYICRNIPIPKRDFTSKPKLIVIRSFDVNKPGEDVENLKGGVAGGSILEGVLRVGDEIEVRPGIVSKDEEGKMTCVPIFSRIVSLYAEKNDLQFAVPGGLIGVGTHIDPTLTRSDRLVGQVLGLKGSLPHVFTELEINFYLLKRLLGVKTQEGSKASKVQKLSKAEVLMVNIGSTATGGKVLAVKQDL------AKILLTVPVCTQEGEKIAISRRIDKHWRLIGWGQIRRGSRIEIADS 461

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BLAST of NO07G03130 vs. NCBI_GenBank
Match: ETI50298.1 (eukaryotic translation initiation factor 2 subunit 3 [Phytophthora parasitica P1569] >ETI50299.1 eukaryotic translation initiation factor 2 subunit 3, variant [Phytophthora parasitica P1569])

HSP 1 Score: 672.2 bits (1733), Expect = 1.200e-189
Identity = 344/449 (76.61%), Postives = 389/449 (86.64%), Query Frame = 0

Query:    9 LTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPAEDGVP-GNYRAKGSSAPDVFEEDG---KVWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIASS 454
            LTPLTPEVIS+QATINIGTIGHVAHGKSTVVKAISGV TVR K ELERNITIKLGYANAKI++   AE+G   G YRA GSS PD F E+      W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAA+EIMRL NIIILQNKVDL+K   A  Q+EQI+KFVAGTVA  +PIIPISAV K+N+DVVCEY+   IP+P RDFTS P+LIVIRSFDVNKPGE VE+LKGGVAGGSIL+GVL++GD+IEVRPGIV+KD EG + CVPIFS+I SL+AE N+L+FAVPGGLIGVGT IDPTLTR+DRLVGQVLGL+G LP VFTE+EI++YLL+RLLGVKTQ+G K +KVQKL   E+LMVNIGSTATGGKVL +++D+      AKI+LT PVCTQEGEKIA+SRR+DKHWRLIGWGQIRRG+ I+IA S
Sbjct:   22 LTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYR---AENGTGIGCYRAFGSSKPDRFVEENDEKTTWVLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEVCPQPQTSEHLAAIEIMRLQNIIILQNKVDLIKEDAAVAQHEQIKKFVAGTVAHDAPIIPISAVLKYNVDVVCEYICRNIPIPKRDFTSKPKLIVIRSFDVNKPGEDVENLKGGVAGGSILEGVLRVGDEIEVRPGIVSKDEEGKMTCVPIFSRIVSLYAEKNDLQFAVPGGLIGVGTHIDPTLTRSDRLVGQVLGLKGSLPHVFTELEINFYLLKRLLGVKTQEGSKASKVQKLSKAEVLMVNIGSTATGGKVLAVKQDL------AKILLTVPVCTQEGEKIAISRRIDKHWRLIGWGQIRRGSRIEIADS 461

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BLAST of NO07G03130 vs. NCBI_GenBank
Match: XP_008891551.1 (eukaryotic translation initiation factor 2 subunit 3 [Phytophthora parasitica INRA-310] >XP_008891552.1 eukaryotic translation initiation factor 2 subunit 3, variant [Phytophthora parasitica INRA-310] >ETN22276.1 eukaryotic translation initiation factor 2 subunit 3 [Phytophthora parasitica INRA-310] >ETN22277.1 eukaryotic translation initiation factor 2 subunit 3, variant [Phytophthora parasitica INRA-310])

HSP 1 Score: 672.2 bits (1733), Expect = 1.200e-189
Identity = 346/449 (77.06%), Postives = 391/449 (87.08%), Query Frame = 0

Query:    9 LTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPAEDGVP-GNYRAKGSSAPDVF--EEDGKV-WELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIASS 454
            LTPLTPEVIS+QATINIGTIGHVAHGKSTVVKAISGV TVR K ELERNITIKLGYANAKI++   AE+G   G YRA GSS PD F  E D K+ W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAA+EIMRL NIIILQNKVDL+K   A  Q+EQI+KFVAGTVA  +PIIPISAV K+N+DVVCEY+   IP+P RDFTS P+LIVIRSFDVNKPGE VE+LKGGVAGGSIL+GVL++GD+IEVRPGIV+KD EG + CVPIFS+I SL+AE N+L+FAVPGGLIGVGT IDPTLTR+DRLVGQVLGL+G LP VFTE+EI++YLL+RLLGVKTQ+G K +KVQKL   E+LMVNIGSTATGGKVL +++D+      AKI+LT PVCTQEGEKIA+SRR+DKHWRLIGWGQIRRG+ I+IA S
Sbjct:   22 LTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYR---AENGTGIGCYRAFGSSKPDRFVDENDEKMTWVLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEVCPQPQTSEHLAAIEIMRLQNIIILQNKVDLIKEDAAVAQHEQIKKFVAGTVAHDAPIIPISAVLKYNVDVVCEYICRNIPIPKRDFTSKPKLIVIRSFDVNKPGEDVENLKGGVAGGSILEGVLRVGDEIEVRPGIVSKDEEGKMTCVPIFSRIVSLYAEKNDLQFAVPGGLIGVGTHIDPTLTRSDRLVGQVLGLKGSLPHVFTELEINFYLLKRLLGVKTQEGSKASKVQKLSKAEVLMVNIGSTATGGKVLAVKQDL------AKILLTVPVCTQEGEKIAISRRIDKHWRLIGWGQIRRGSRIEIADS 461

[Close]

BLAST of NO07G03130 vs. NCBI_GenBank
Match: XP_002901883.1 (eukaryotic translation initiation factor 2 subunit 3 [Phytophthora infestans T30-4] >EEY57273.1 eukaryotic translation initiation factor 2 subunit 3 [Phytophthora infestans T30-4])

HSP 1 Score: 672.2 bits (1733), Expect = 1.200e-189
Identity = 347/449 (77.28%), Postives = 390/449 (86.86%), Query Frame = 0

Query:    9 LTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRTKPELERNITIKLGYANAKIFKCNPAEDGVP-GNYRAKGSSAPDVF--EEDGK-VWELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEHLAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIPISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVEDLKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFAEHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEISYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLREDVGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKIASS 454
            LTPLTPEVIS+QATINIGTIGHVAHGKSTVVKAISGV TVR K ELERNITIKLGYANAKI++   AE+G   G YRA GSS PD F  E D K  W LQRHVSFVDCPGHDILMATMLNGAAVMDAALLL+AGNE CPQPQTSEHLAA+EIMRL NIIILQNKVDL+K   A  Q+EQI+KFVAGTVA  +PIIPISAV K+N+DVVCEY+   IPVP RDFTS P+LIVIRSFDVNKPGE VE+LKGGVAGGSIL+GVL++GD+IEVRPGIV+KD EG + CVPIFS+I SL+AE N+L+FAVPGGLIGVGT IDPTLTR+DRLVGQVLGL+G LP VFTE+EI++YLL+RLLGVKTQ+G K +KVQKL   E+LMVNIGSTATGGKVL +++D+      AKI+LT PVCTQEGEKIA+SRR+DKHWRLIGWGQIRRG+ I+IA S
Sbjct:   22 LTPLTPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYR---AENGTGIGCYRAFGSSKPDRFVDENDEKTTWVLQRHVSFVDCPGHDILMATMLNGAAVMDAALLLVAGNEVCPQPQTSEHLAAIEIMRLQNIIILQNKVDLIKEDAAVAQHEQIKKFVAGTVAHDAPIIPISAVLKYNVDVVCEYICRNIPVPKRDFTSKPKLIVIRSFDVNKPGEDVENLKGGVAGGSILEGVLRVGDEIEVRPGIVSKDEEGKMTCVPIFSRIVSLYAEKNDLQFAVPGGLIGVGTHIDPTLTRSDRLVGQVLGLKGSLPHVFTELEINFYLLKRLLGVKTQEGSKASKVQKLSKAEVLMVNIGSTATGGKVLAVKQDL------AKILLTVPVCTQEGEKIAISRRIDKHWRLIGWGQIRRGSRIEIADS 461

The following BLAST results are available for this feature:

BLAST of NO07G03130 vs. NCBI_GenBank

BLAST of NO07G03130 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM27044.1	1.100e-243	93.06	eukaryotic translation initiation factor 2 subunit...	[more]
XP_009035074.1	3.700e-191	77.16	hypothetical protein AURANDRAFT_22992 [Aureococcus...	[more]
XP_009519528.1	3.200e-190	76.84	hypothetical protein PHYSODRAFT_325378 [Phytophtho...	[more]
XP_008613264.1	4.100e-190	75.28	eukaryotic translation initiation factor 2 subunit...	[more]
XP_012200208.1	4.100e-190	75.28	eukaryotic translation initiation factor 2 subunit...	[more]
XP_024572466.1	9.200e-190	77.06	eukaryotic translation initiation factor 2 subunit...	[more]
POM58381.1	9.200e-190	76.61	Eukaryotic translation initiation factor 2 subunit...	[more]
ETI50298.1	1.200e-189	76.61	eukaryotic translation initiation factor 2 subunit...	[more]
XP_008891551.1	1.200e-189	77.06	eukaryotic translation initiation factor 2 subunit...	[more]
XP_002901883.1	1.200e-189	77.28	eukaryotic translation initiation factor 2 subunit...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL100	nonsL100	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR072	ncniR072	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR071	ncniR071	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR130	ngnoR130	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK000546	NSK000546	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO07G03130.1	NO07G03130.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581039	gene_2645	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100056g37	gene3488	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO07G03130.1	NO07G03130.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO07G03130 ID=NO07G03130|Name=NO07G03130|organism=Nannochloropsis oceanica|type=gene|length=2140bp
ATGgtacgtgtgcgtgcttgcagtctgcctgattactttcttttcctgca
atcctttccttccgttaccaagcacacacgcgatgactgaactctgtagg
ttagatggtgcttctgtagcttcctcccgccgtgacttattctaaaactc
ctccagcaattcttgtgagcctcataatttgtgtctctttgcatgccgca
cctgtccgcaacactccaaaacatgccttttgataaggcttaatgtcctt
cctcatggctcactcactccggcccttactccttcccttcgctctccctc
ctcttagCCTATGCCCGACCCCTCCACCCTCACCCCCCTGACGCCCGAGG
TCATCTCCAAGCAAGCTACCATAAATATCGGGACTATCGGTCACGTGGCG
CACGGAAAATCGACGGTGGTGAAGGCAATCAGTGGCGTGAACACAGTCAG
AACCAAGCCAGAGCTGGAGCGAAATATTACCATCAAGCTAGGgtaaggct
catatctccttccttccctccctccttgtggagatcccaacctagttctc
aaccctccctccgcccctccctccgtccaagGTACGCTAACGCCAAGATC
TTTAAGTGTAACCCCGCAGAAGATGGCGTGCCAGGGAATTACCGAGCCAA
GGGATCGTCTGCTCCTGACGTGTTTGAAGAGGATGGAAAGGTGTGGGAGT
TGCAAAGGCATGTCTCCTTTGTTGATTGCCCGGGGCACGATATTCTGgta
cgttgggagggaggggaggagggagggaaggaggaaagaggggcttaacg
tgtgcacgtggcaaccaataacatcgtcccttctgtttccctccctcgca
tcctcttcctcctcctccccgtcctcctcctcctttccccagATGGCCAC
GATGCTTAACGGCGCCGCAGTCATGGACGCCGCCCTCCTCCTCATCGCTG
GCAATGAAGCTTGTCCTCAGCCACAGACGTCCGAGCATCTGGCTGCCGTG
GAAATCATGCGTCTCGCCAACATCATCATCTTGCAGAATAAGGTGGATCT
GGTCAAGCCCGCCGATGCCTCCATGCAATACGAACAGgtaaacccatcct
ccctttcttcctccctccctccattcctccctccctagctcctgattgcc
cgtccgtccccattttccttttcttgttttctccttgccgcctgaatctt
ttatgtatcgtgtcttttccatctccctctccaactccctctccctccct
ccctccctttctccctctctcctctacagATCCGCAAGTTCGTAGCTGGC
ACCGTCGCGGACTCCTCACCCATCATTCCCATTTCTGCCGTTAAAAAGTT
CAACATCGACGTGGTGTGCGAGTACCTTGTGAACCGCATTCCTGTCCCCC
CTCGTGACTTCACCTCCTCCCCGCGGTTGATCGTCATCCGCTCCTTCGAC
GTGAACAAGCCCGGGGAGCTAGTGGAGGACCTCAAGGGCGGCGTGGCGGG
CGGGAGTATCCTGCAGGGTGTGTTGAAGCTCGGCGACCAGATCGAGGTCC
GGCCCGGCATAGTCACTAAGGACGCCGAGGGGAATGTGAAGTGCGTCCCC
ATCTTCAGCCAGATCACCTCCCTGTTTGCGGAGCACAACGAATTGGAATT
CGCTGTACCCGGGGGCTTGATAGGCGTGGGAACGAGGATTGATCCCACCT
TGACAAGGGCAGATCGCTTGGTGGGCCAGGTGTTGGGATTAAGAGGGCAG
TTGCCCGAGGTCTTTACAGAGGTGGAAATATCGTACTATCTGCTTCGGCG
GCTCTTGGGCGTGAAGACCCAAGACGGGGAGAAGAAGGCGAAAGTGCAGA
AACTGCAAGCCAAAGAGATATTGATGGTTAATATTGGGAGCACGGCCACG
GGCGGGAAGGTGTTGGGGCTGAGGGAGGACGTGGGGAAGAGGGAGGATTA
TGCGAAAATTATGCTGACCCAGCCAGTGTGCACGCAGGAGGGGGAGAAGA
TTGCGTTGAGTCGACGGGTAGATAAGCACTGGAGGTTGATAGGATGGGGA
CAGATTAGGAGGGGCACCACGATTAAGATAGCGAGTAGTTTGAACGCGTC
GGCAGGGGAAGGAGGAGGAGGTGGGGAGGAGGGGAAGTGA

protein sequence of NO07G03130.1

>NO07G03130.1-protein ID=NO07G03130.1-protein|Name=NO07G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=470bp
MPMPDPSTLTPLTPEVISKQATINIGTIGHVAHGKSTVVKAISGVNTVRT
KPELERNITIKLGYANAKIFKCNPAEDGVPGNYRAKGSSAPDVFEEDGKV
WELQRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNEACPQPQTSEH
LAAVEIMRLANIIILQNKVDLVKPADASMQYEQIRKFVAGTVADSSPIIP
ISAVKKFNIDVVCEYLVNRIPVPPRDFTSSPRLIVIRSFDVNKPGELVED
LKGGVAGGSILQGVLKLGDQIEVRPGIVTKDAEGNVKCVPIFSQITSLFA
EHNELEFAVPGGLIGVGTRIDPTLTRADRLVGQVLGLRGQLPEVFTEVEI
SYYLLRRLLGVKTQDGEKKAKVQKLQAKEILMVNIGSTATGGKVLGLRED
VGKREDYAKIMLTQPVCTQEGEKIALSRRVDKHWRLIGWGQIRRGTTIKI
ASSLNASAGEGGGGGEEGK*

Synonyms

Publications