NO07G03080, NO07G03080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G03080 vs. NCBI_GenBank
Match: DAA05932.1 (TPA_inf: chloroplast protein precursor LI818;2 [Mesostigma viride]) HSP 1 Score: 125.2 bits (313), Expect = 3.100e-25 Identity = 72/169 (42.60%), Postives = 97/169 (57.40%), Query Frame = 0 Query: 92 GVSAPFG-FFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGW-DPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPI 259 G SAPFG FDPLNF GG++T K RESEL HGRVAM+A G E ++PL G A++Q+ V + F + + L E I +GW P E P + +++ Y G L YDPLG P + ++ M TKELNNGR+AMI + G++ QE++T PI Sbjct: 58 GKSAPFGDGFDPLNFLGGKTTAEIKMLRESELVHGRVAMLATLGFVVGETFNPLFGGSITGPAINQFQQVPQ---PFWELVVLAIGLAEGFRINRGWGSPAEAFFSIPGV--LKESYTPGTLGYDPLGLKPTNSKELDEMATKELNNGRLAMIGIAGMVVQELITQTPI 221
BLAST of NO07G03080 vs. NCBI_GenBank
Match: CBJ27804.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 124.8 bits (312), Expect = 4.000e-25 Identity = 78/234 (33.33%), Postives = 123/234 (52.56%), Query Frame = 0 Query: 30 MIATRALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFG---FFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDF-ETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIV 260 M+A++ + A +AS+ AP AV + ++ M + SD++ T G APF FDPL G + KK+RE+E+KHGRVAM+A G+ E +HP G D+ A+D + ++ P+F ++ ++ E+ +I +D G+++DY+ GDL +DPL PDD+ M+TKELNNGR+AMI + G++AQE+V I+ Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAVRSVAPAPSSSSLKMSAGSDYV----------ATLPG--APFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGE---GGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 219
BLAST of NO07G03080 vs. NCBI_GenBank
Match: AAP79202.1 (chlorophyll a/b-binding protein LI818 1, partial [Bigelowiella natans]) HSP 1 Score: 124.4 bits (311), Expect = 5.300e-25 Identity = 62/167 (37.13%), Postives = 96/167 (57.49%), Query Frame = 0 Query: 94 SAPFG-FFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIV 260 +AP G F+DP F G S KK+RE+E+ HGRV+M+ V G QE +HPL G+ A+ Q+ +T P F + +++ E GW ++ + +RD+Y G++ +DPL P + D +++ KELNNGR+AM+A+ G +AQE+V G PI+ Sbjct: 53 TAPLGKFWDPAGFTKGLSPNELKKYREAEITHGRVSMLGVLGFLTQEAFHPLFGGNIDGPAIKQFDEITRMAPTFWYPVLLAIAVAELGRARLGW---QDPTSGGAMFSLRDEYEPGNIGFDPLNLKPSNPTDLASIKNKELNNGRLAMLALAGFVAQELVNGKPIL 216
BLAST of NO07G03080 vs. NCBI_GenBank
Match: DAA05890.1 (TPA_inf: chloroplast protein precursor LI818;3 [Bigelowiella natans]) HSP 1 Score: 124.4 bits (311), Expect = 5.300e-25 Identity = 62/167 (37.13%), Postives = 96/167 (57.49%), Query Frame = 0 Query: 94 SAPFG-FFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIV 260 +AP G F+DP F G S KK+RE+E+ HGRV+M+ V G QE +HPL G+ A+ Q+ +T P F + +++ E GW ++ + +RD+Y G++ +DPL P + D +++ KELNNGR+AM+A+ G +AQE+V G PI+ Sbjct: 21 TAPLGKFWDPAGFTKGLSPNELKKYREAEITHGRVSMLGVLGFLTQEAFHPLFGGNIDGPAIKQFDEITRMAPTFWYPVLLAIAVAELGRARLGW---QDPTSGGAMFSLRDEYEPGNIGFDPLNLKPSNPTDLASIKNKELNNGRLAMLALAGFVAQELVNGKPIL 184
BLAST of NO07G03080 vs. NCBI_GenBank
Match: XP_005853385.1 (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >EKU22975.1 light harvesting complex protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 124.0 bits (310), Expect = 6.900e-25 Identity = 76/192 (39.58%), Postives = 113/192 (58.85%), Query Frame = 0 Query: 83 LGELEVTKAGVSAPF-GFFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFET--ALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDED-FITMRTK-----------ELNNGRMAMIAVIGIIAQE--IVTGVP 258 L E+E+ +AG ++PF FDPL +S + KK+RE+ELKHGRVAM+AV G QE +HPL ++ E A+ + + P F +F++ + E ++I+ GWD E + +IAG+++DY+ G+L DPL +DDE+ F++ R K ELNNGR+AMIA GI QE + G+P Sbjct: 3 LAEIEL-EAGKTSPFPDGFDPLGLSKDKSFKELKKWREAELKHGRVAMLAVLGTAVQENFHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGIIEARTISTGWD--ENMAGSSQIAGVKEDYICGNLGLDPLKIIENDDEEAFLSYRNKSHRFLPYLIFQELNNGRLAMIAAAGITVQEKFVTNGLP 191
BLAST of NO07G03080 vs. NCBI_GenBank
Match: KOO21812.1 (protein fucoxanthin chlorophyll a c protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 123.2 bits (308), Expect = 1.200e-24 Identity = 70/167 (41.92%), Postives = 96/167 (57.49%), Query Frame = 0 Query: 92 GVSAPFGFFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGW-DPIEETLKNPKIAG--MRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTG 256 G AP G FDP F G+S +FRE+EL HGRV M+A AG QE +HPL +GD+ A++Q + + P G + + E I KGW +P E I+G +++DY GDL +DPLG P D +F M+ +EL++GR+ M+A G IAQE VTG Sbjct: 29 GNIAPAGDFDPAGFCAGKSKNEVYRFREAELTHGRVGMLAAAGFLVQEFFHPLFSGDN-GPAIEQ---IPQLPPPLWFGMTLAIGVCESLRIQKGWANPYE----GKDISGNLLKEDYYPGDLAWDPLGLKPTDPAEFKLMQERELSHGRLGMLAAAGFIAQEAVTG 187
BLAST of NO07G03080 vs. NCBI_GenBank
Match: KOO32942.1 (serine threonine-protein kinase 3 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 122.5 bits (306), Expect = 2.000e-24 Identity = 74/176 (42.05%), Postives = 95/176 (53.98%), Query Frame = 0 Query: 85 ELEVTKAGVSAPFGFFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFETA--LDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGW---DPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTG 256 EL T GV+ PFGFFDPLN + K +RE+EL H RV+MMA AG QE +HP+ D A LDQ +P+ L + + E KGW D + I +R DY+ GDL +DPLG P +F M+ KELNNGR+AMIAV G++ QE+ TG Sbjct: 382 ELARTMPGVTGPFGFFDPLNIC-PEDEMDVKLWREAELMHCRVSMMAAAGFLVQEKFHPIFPDVDGPAAFQLDQIP-----VPEQALLLLLPIFQSEIARAKKGWMEPDYSSDAAAQGSIRTLRKDYMPGDLGFDPLGLKPTSPAEFKEMQNKELNNGRLAMIAVAGMVGQELATG 551
BLAST of NO07G03080 vs. NCBI_GenBank
Match: EWM30071.1 (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 122.1 bits (305), Expect = 2.600e-24 Identity = 88/237 (37.13%), Postives = 127/237 (53.59%), Query Frame = 0 Query: 34 RALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPF-GFFDPLNFYGGQSTRTKKKFRESELKHG-------RVAMMAVAGIFFQEIWHPLLAGDDFET--ALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDED-FITMRTKELNNGRMAMIAVIGIIAQE--IVTGVP 258 R L LA+ A+AFV PT S G L E+E+ +AG ++PF FDPL +S + KK+RE+ELKHG RVAM+AV G QE +HPL ++ E A+ + + P F +F++ + E ++I+ GWD E + +IAG+++DY+ G+L DPL +DDE+ F++ R KELNNGR+AMIA GI QE + G+P Sbjct: 2 RVLSFLAIIGTAAAFVK--PTLPAAGSRTRAG------------ALRMNLAEIEL-EAGKTSPFPDGFDPLGLSKDKSFKELKKWREAELKHGMSLHPPRRVAMLAVLGTAVQENFHPLWGFNEKEMDGAIFHFQEIQNVYPLFWTALLFIIGIIEARTISTGWD--ENMAGSSQIAGVKEDYICGNLGLDPLKIIENDDEEAFLSYRNKELNNGRLAMIAAAGITVQEKFVTNGLP 221
BLAST of NO07G03080 vs. NCBI_GenBank
Match: CBJ27806.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 121.3 bits (303), Expect = 4.500e-24 Identity = 61/161 (37.89%), Postives = 94/161 (58.39%), Query Frame = 0 Query: 100 FDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDF-ETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIV 260 FDPL G + KK+RE+E+KHGRVAM+A G+ E +HP G D+ A+D + ++ P+F ++ ++ E+ +I +D G+++DY+ GDL +DPL PDD+ M+TKELNNGR+AMI + G++AQE+V I+ Sbjct: 38 FDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGE---GGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
BLAST of NO07G03080 vs. NCBI_GenBank
Match: CBJ48499.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 120.9 bits (302), Expect = 5.800e-24 Identity = 77/236 (32.63%), Postives = 122/236 (51.69%), Query Frame = 0 Query: 30 MIATRALLCLALPALASAFVSRAPTAVTRASAP--VKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDF-ETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIVKSI 263 M+ ++ L A +AS+ AP A R+S T M + SD+ L G++A +FDP Q T KK+RE+ELKHGRV+M+A GI E++HPL G + A++ + P F + ++ +++ E ++I W + + ++ +Y GDL +DPLG P D EDF ++++EL+ GR AMI V+G+I QE+V G I++ I Sbjct: 1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDY------AASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPV---TGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHI 227 The following BLAST results are available for this feature:
BLAST of NO07G03080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G03080 ID=NO07G03080|Name=NO07G03080|organism=Nannochloropsis oceanica|type=gene|length=2152bpback to top protein sequence of NO07G03080.1 >NO07G03080.1-protein ID=NO07G03080.1-protein|Name=NO07G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bpback to top Synonyms
Publications
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