NO07G03080, NO07G03080 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G03080 vs. NCBI_GenBank
Match: XP_005852499.1 (light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526] >EKU23332.1 light harvesting complex protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 396.4 bits (1017), Expect = 7.200e-107 Identity = 193/231 (83.55%), Postives = 208/231 (90.04%), Query Frame = 0 Query: 34 RALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIVKSIFG 265 R L C+ALPALA+AF++RAPT V + KGRTVVMESIS+FLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGG++ R KKK RESELKHGRVAMMAV GIF QE+WHPLLAGDDFETAL QYYGVTEFIPDFG GA+FVLSLFEFKSIA GWDP+EETLK PKIAGMRDDYVAGDLQYDPLGFCPDDDE F+ MRTKELNNGRMAMIA IGII QE+ TGVP+VKS+FG Sbjct: 492 RLLFCVALPALATAFLARAPTTVPHTHSVRKGRTVVMESISEFLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGGKTIRQKKKLRESELKHGRVAMMAVLGIFVQELWHPLLAGDDFETALSQYYGVTEFIPDFGAGALFVLSLFEFKSIAMGWDPVEETLKEPKIAGMRDDYVAGDLQYDPLGFCPDDDEAFVRMRTKELNNGRMAMIAAIGIIGQELATGVPVVKSLFG 722
BLAST of NO07G03080 vs. NCBI_GenBank
Match: EWM27041.1 (light harvesting complex protein [Nannochloropsis gaditana]) HSP 1 Score: 396.4 bits (1017), Expect = 7.200e-107 Identity = 193/231 (83.55%), Postives = 208/231 (90.04%), Query Frame = 0 Query: 34 RALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIVKSIFG 265 R L C+ALPALA+AF++RAPT V + KGRTVVMESIS+FLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGG++ R KKK RESELKHGRVAMMAV GIF QE+WHPLLAGDDFETAL QYYGVTEFIPDFG GA+FVLSLFEFKSIA GWDP+EETLK PKIAGMRDDYVAGDLQYDPLGFCPDDDE F+ MRTKELNNGRMAMIA IGII QE+ TGVP+VKS+FG Sbjct: 7 RLLFCVALPALATAFLARAPTTVPHTHSVRKGRTVVMESISEFLKFDAKLGELEVTKAGVSAPFGFFDPLNFYGGKTIRQKKKLRESELKHGRVAMMAVLGIFVQELWHPLLAGDDFETALSQYYGVTEFIPDFGAGALFVLSLFEFKSIAMGWDPVEETLKEPKIAGMRDDYVAGDLQYDPLGFCPDDDEAFVRMRTKELNNGRMAMIAAIGIIGQELATGVPVVKSLFG 237
BLAST of NO07G03080 vs. NCBI_GenBank
Match: XP_005855703.1 (light harvesting complex protein [Nannochloropsis gaditana CCMP526] >EKU20655.1 light harvesting complex protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 142.5 bits (358), Expect = 1.900e-30 Identity = 76/175 (43.43%), Postives = 110/175 (62.86%), Query Frame = 0 Query: 90 KAGVSAPFGFFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEI----WHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWD-PIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDED-FITMRTKELNNGRMAMIAVIGIIAQEIVTGVPI 259 +AG +APFGFFDP+ G++ + KK+RESE+KHGRVAM+AV G+ QE+ ++P D A+ + + P + + +++ E +I+KGW+ P E IAG+RD YVAGDL++DPLG P D D FI R+KELNNGR+AMIA G++ QE+++ I Sbjct: 2 EAGATAPFGFFDPIGLSTGKTFKELKKWRESEVKHGRVAMLAVVGVLLQEVFAPFYNPETGSSDPGPAIFHFQELEALNPFLFVFLILGIAIVESFTISKGWESPEEMRAGGNTIAGLRDTYVAGDLEFDPLGLAPTADVDAFINQRSKELNNGRLAMIAWAGMVVQELISNSKI 176
BLAST of NO07G03080 vs. NCBI_GenBank
Match: CBN73961.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 133.3 bits (334), Expect = 1.100e-27 Identity = 89/241 (36.93%), Postives = 125/241 (51.87%), Query Frame = 0 Query: 33 TRALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEV-------TKAGVSAPFGFFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLL--AGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIVKSIFG 265 T + LA A AS F+ T TR+ + + + I + + +E+ T AG SAPF +FDPL KKFRESE+KH RVAM+A G+F QE+ HPL G D A+ + VT + P + ++ +FE +I GW +++ LK +A ++ DY G +DPLG P D+ M TKELNNGR+AMIA IG+ AQE+V G I+ + G Sbjct: 3 TSCAVALASVATASGFMVPVATP-TRSRTSLASGSAQFDEILQAPEAEEPPPPIELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGW--VKQPLK-LGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG 239
BLAST of NO07G03080 vs. NCBI_GenBank
Match: CBJ27787.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 129.8 bits (325), Expect = 1.300e-26 Identity = 81/234 (34.62%), Postives = 125/234 (53.42%), Query Frame = 0 Query: 30 MIATRALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFG---FFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDF-ETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIV 260 M+AT+ L A +AS+ AP AV A+ + M + SD++ T G APFG FDPLN G KK+RE+E+KHGRVAM+A G+ E +HPL G D+ A+D + ++ P+F + ++ ++ E+ +I ++ G+++DYV GDL +DPL P+D+ M+TKELNNGR+AMI + G++ QE++ I+ Sbjct: 1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYV----------ATLPG--APFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGE---GGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
BLAST of NO07G03080 vs. NCBI_GenBank
Match: CBJ27790.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 129.4 bits (324), Expect = 1.600e-26 Identity = 83/238 (34.87%), Postives = 126/238 (52.94%), Query Frame = 0 Query: 30 MIATRALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFG---FFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDF-ETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIVKSIF 264 M+A++ L A +AS+ AP AV A+ + M + SD++ T G APF FDPL+ G + KK+RE+E+KHGRVAM+A GI E +HPL G DF A+ + ++ P+F ++ ++ E+ +I +D G+++DY+ GDL +DPL PD + M+TKELNNGR+AMI + G++AQE+V G I+ + F Sbjct: 1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYV----------ATLPG--APFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGE---GGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDILPNFF 223
BLAST of NO07G03080 vs. NCBI_GenBank
Match: CBJ27807.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 127.5 bits (319), Expect = 6.200e-26 Identity = 77/219 (35.16%), Postives = 117/219 (53.42%), Query Frame = 0 Query: 48 FVSRAPTAVTRAS---APVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFG---FFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDF-ETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIV 260 F+ A T + ++ AP+ R+V S LK A + T G APF FDPL G + KK+RE+E+KHGRVAM+A G+ E +HP G D+ A+D + ++ P+F ++ ++ E+ +I +D G+++DY+ GDL +DPL PDD+ M+TKELNNGR+AMI + G++AQE+V I+ Sbjct: 7 FIGTAATLIASSTAFVAPMAARSVATTPSSSSLKMSAG-SDYVATLPG--APFSDGKVFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGE---GGLKEDYIPGDLGFDPLNLKPDDEAALDAMKTKELNNGRLAMIGIAGMLAQELVNPADIL 219
BLAST of NO07G03080 vs. NCBI_GenBank
Match: CBJ27808.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 127.5 bits (319), Expect = 6.200e-26 Identity = 80/234 (34.19%), Postives = 124/234 (52.99%), Query Frame = 0 Query: 30 MIATRALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFG---FFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDF-ETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIV 260 M+A++ L A +AS+ AP AV A+ ++ M + SD++ T G APF FDPL G + KK+RE+E+KHGRVAM+A G+ E +HP G D+ A+D + ++ P+F ++ ++ E+ +I +D G+++DY+ GDL +DPL PDD+ M+TKELNNGR+AMI + G++AQE+V I+ Sbjct: 1 MVASQMFLGTAATLIASSTAFVAPMAVRSAATTPSSSSLKMSAGSDYV----------ATLPG--APFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGE---GGLKEDYIPGDLGFDPLNLKPDDEAALDAMKTKELNNGRLAMIGIAGMLAQELVNPADIL 219
BLAST of NO07G03080 vs. NCBI_GenBank
Match: ABD37894.1 (LI818-1 protein [Mesostigma viride]) HSP 1 Score: 125.2 bits (313), Expect = 3.100e-25 Identity = 72/169 (42.60%), Postives = 97/169 (57.40%), Query Frame = 0 Query: 92 GVSAPFG-FFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDFETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGW-DPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPI 259 G SAPFG FDPLNF GG++T K RESEL HGRVAM+A G E ++PL G A++Q+ V + F + + L E I +GW P E P + +++ Y G L YDPLG P + ++ M TKELNNGR+AMI + G++ QE++T PI Sbjct: 60 GKSAPFGDGFDPLNFLGGKTTAEIKMLRESELVHGRVAMLATLGFVVGETFNPLFGGSITGPAINQFQQVPQ---PFWELVVLAIGLAEGFRINRGWGSPAEAFFSIPGV--LKESYTPGTLGYDPLGLKPTNSKELDEMATKELNNGRLAMIGIAGMVVQELITQTPI 223
BLAST of NO07G03080 vs. NCBI_GenBank
Match: CBJ27803.1 (Light harvesting complex protein [Ectocarpus siliculosus]) HSP 1 Score: 125.2 bits (313), Expect = 3.100e-25 Identity = 78/234 (33.33%), Postives = 123/234 (52.56%), Query Frame = 0 Query: 30 MIATRALLCLALPALASAFVSRAPTAVTRASAPVKGRTVVMESISDFLKFDAKLGELEVTKAGVSAPFG---FFDPLNFYGGQSTRTKKKFRESELKHGRVAMMAVAGIFFQEIWHPLLAGDDF-ETALDQYYGVTEFIPDFGLGAMFVLSLFEFKSIAKGWDPIEETLKNPKIAGMRDDYVAGDLQYDPLGFCPDDDEDFITMRTKELNNGRMAMIAVIGIIAQEIVTGVPIV 260 M+A++ + A +AS+ AP AV + ++ M + SD++ T G APF FDPL G + KK+RE+E+KHGRVAM+A G+ E +HP G D+ A+D + ++ P+F ++ ++ E+ +I +D G+++DY+ GDL +DPL PDD+ M+TKELNNGR+AMI + G++AQE+V I+ Sbjct: 1 MVASQMFIGTAATLIASSTAFVAPMAVRSVATTPSSSSLKMSAGSDYV----------ATLPG--APFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGE---GGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 219 The following BLAST results are available for this feature:
BLAST of NO07G03080 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G03080 ID=NO07G03080|Name=NO07G03080|organism=Nannochloropsis oceanica|type=gene|length=2152bpback to top protein sequence of NO07G03080.1 >NO07G03080.1-protein ID=NO07G03080.1-protein|Name=NO07G03080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=265bpback to top Synonyms
Publications
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