NO07G03050, NO07G03050 (gene) Nannochloropsis oceanica

Overview
NameNO07G03050
Unique NameNO07G03050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length662
Alignment locationchr7:849094..849755 -

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Properties
Property NameValue
DescriptionDolichol phosphate-mannose biosynthesis regulatory protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:849094..849755 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0019348dolichol metabolic process
GO:0009058biosynthetic process
GO:0006629lipid metabolic process
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0030176integral component of endoplasmic reticulum membrane
GO:0016020membrane
GO:0005783endoplasmic reticulum
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0030234enzyme regulator activity
GO:0030234enzyme regulator activity
Vocabulary: INTERPRO
TermDefinition
IPR009914DPM2
Homology
BLAST of NO07G03050 vs. NCBI_GenBank
Match: XP_009830968.1 (hypothetical protein H257_07215 [Aphanomyces astaci] >ETV80032.1 hypothetical protein H257_07215 [Aphanomyces astaci])

HSP 1 Score: 82.8 bits (203), Expect = 6.700e-13
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 0
Query:    3 SDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLRA 75
            SDQ AGA LLAV+V+ +VYY LWVI+ PF+D D  + +FFP R+YAIAIP+VLLVVF+ + + FIGL M+R+
Sbjct:    5 SDQRAGAILLAVSVVSYVYYFLWVIISPFVDKDHIVQSFFPERYYAIAIPSVLLVVFLTVCSTFIGLVMIRS 76          
BLAST of NO07G03050 vs. NCBI_GenBank
Match: CBN77246.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 80.9 bits (198), Expect = 2.500e-12
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = 0
Query:    1 MGSDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLRAA 76
            + SD+L G+ LL V+V +FVYYTLWVIVLPF+D    +  FF PR YAIAIPTVL+++ V LV  FIGLT++++A
Sbjct:    3 VSSDKLVGSGLLLVSVTIFVYYTLWVIVLPFVDTSHPVQDFFLPRKYAIAIPTVLVILLVTLVATFIGLTLMKSA 77          
BLAST of NO07G03050 vs. NCBI_GenBank
Match: XP_008619981.1 (dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit [Saprolegnia diclina VS20] >EQC26643.1 dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit [Saprolegnia diclina VS20])

HSP 1 Score: 79.7 bits (195), Expect = 5.700e-12
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 0
Query:    3 SDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLRA 75
            SDQ  GA LLA++V +F YYTLWVI+ PF+D D  +  FFP R YAIAIP +LLV+F+ + + FIGL M+++
Sbjct:    5 SDQTVGAILLAISVSMFAYYTLWVIITPFVDKDHVVQGFFPDRHYAIAIPAILLVIFLTICSTFIGLVMIKS 76          
BLAST of NO07G03050 vs. NCBI_GenBank
Match: XP_012202376.1 (hypothetical protein SPRG_07708 [Saprolegnia parasitica CBS 223.65] >KDO26995.1 hypothetical protein SPRG_07708 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 79.3 bits (194), Expect = 7.400e-12
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 0
Query:    3 SDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLRA 75
            SDQ  GA LLA++V  F YYTLWVI+ PF+D D  +  FFP R YAIAIP +LLV+F+ + + FIGL M+++
Sbjct:    5 SDQTVGAILLAISVSTFAYYTLWVIITPFVDKDHVVQGFFPDRHYAIAIPAILLVIFLTICSTFIGLVMIKS 76          
BLAST of NO07G03050 vs. NCBI_GenBank
Match: OQR87730.1 (hypothetical protein ACHHYP_08108 [Achlya hypogyna])

HSP 1 Score: 79.0 bits (193), Expect = 9.700e-12
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 0
Query:    3 SDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLRA 75
            SDQ  GA LLA++V+ F YYTLWVI+ PF+D    + +FFP R YAIAIP +LLV+F+ + + FIGL M+++
Sbjct:    5 SDQTVGAILLAISVVAFAYYTLWVIITPFVDKGHVVQSFFPERHYAIAIPAILLVIFLTICSTFIGLVMIKS 76          
BLAST of NO07G03050 vs. NCBI_GenBank
Match: XP_008876476.1 (hypothetical protein H310_11540 [Aphanomyces invadans] >ETV94885.1 hypothetical protein H310_11540 [Aphanomyces invadans])

HSP 1 Score: 77.0 bits (188), Expect = 3.700e-11
Identity = 39/72 (54.17%), Postives = 57/72 (79.17%), Query Frame = 0
Query:    3 SDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLRA 75
            SDQ +GA LLAV+V+ +VYY LWVI+ PF+D    + +FFP R+YAIAIP+++LVVF+ + + FIGL M+++
Sbjct:    5 SDQRSGAILLAVSVVSYVYYFLWVIITPFVDKGHIVQSFFPERYYAIAIPSIILVVFLTICSTFIGLVMIQS 76          
BLAST of NO07G03050 vs. NCBI_GenBank
Match: OQR81680.1 (hypothetical protein THRCLA_23314, partial [Thraustotheca clavata])

HSP 1 Score: 75.9 bits (185), Expect = 8.200e-11
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 0
Query:    3 SDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLRA 75
            SDQ  GA +LA++V  F YYTLWV++ PF+D D  + +FFP R YAIAIP +L V+F+ + + FIGL M+++
Sbjct:    7 SDQTVGAIVLAISVPTFAYYTLWVLITPFVDKDHVVQSFFPDRHYAIAIPAILFVIFLTICSTFIGLVMIKS 78          
BLAST of NO07G03050 vs. NCBI_GenBank
Match: KFH72540.1 (dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit [Mortierella verticillata NRRL 6337])

HSP 1 Score: 73.6 bits (179), Expect = 4.100e-10
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 0
Query:    2 GSDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLRA 75
            G D++ GA LL  + +VFVYYTLW IV+PF+D    LHA+FPPR YAI IP VLL+  + +V  F+ + M+++
Sbjct:    4 GQDKVVGASLLTFSTVVFVYYTLWAIVMPFVDETYFLHAYFPPREYAIRIPCVLLIFGLTVVLTFLSMIMIKS 76          
BLAST of NO07G03050 vs. NCBI_GenBank
Match: GAQ90830.1 (dolichyl-phosphate mannosyltransferase polypeptide 2 regulatory subunit [Klebsormidium nitens])

HSP 1 Score: 73.2 bits (178), Expect = 5.300e-10
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 0
Query:    3 SDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLRA 75
            +DQLAG  LL  ++ VFVYYTLWVIVLPF+D D  +H++F P+ YAIA+P   LV+ +  + LF+G+ M+R+
Sbjct:    2 NDQLAGLGLLLFSISVFVYYTLWVIVLPFVDSDHAVHSYFLPQEYAIALPVGALVLLLSFLLLFLGILMVRS 73          
BLAST of NO07G03050 vs. NCBI_GenBank
Match: AOW01273.1 (hypothetical protein YALI1_B07538g [Yarrowia lipolytica] >SEI31225.1 YALIA101S01e17898g1_1 [Yarrowia lipolytica])

HSP 1 Score: 73.2 bits (178), Expect = 5.300e-10
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 0
Query:    4 DQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIAIPTVLLVVFVGLVTLFIGLTMLR 74
            DQL GA +LAVA IVFVYY+ W  +LPF+D    LH FFPPR +AI IP +LLV+  G+V  F+   M++
Sbjct:    3 DQLVGAGMLAVATIVFVYYSSWTFILPFVDESHFLHQFFPPRVWAIRIPVILLVIAFGIVGTFVSSVMIK 72          
The following BLAST results are available for this feature:
BLAST of NO07G03050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009830968.16.700e-1361.11hypothetical protein H257_07215 [Aphanomyces astac... [more]
CBN77246.12.500e-1258.67conserved unknown protein [Ectocarpus siliculosus][more]
XP_008619981.15.700e-1255.56dolichyl-phosphate mannosyltransferase polypeptide... [more]
XP_012202376.17.400e-1255.56hypothetical protein SPRG_07708 [Saprolegnia paras... [more]
OQR87730.19.700e-1254.17hypothetical protein ACHHYP_08108 [Achlya hypogyna... [more]
XP_008876476.13.700e-1154.17hypothetical protein H310_11540 [Aphanomyces invad... [more]
OQR81680.18.200e-1151.39hypothetical protein THRCLA_23314, partial [Thraus... [more]
KFH72540.14.100e-1050.68dolichyl-phosphate mannosyltransferase polypeptide... [more]
GAQ90830.15.300e-1052.78dolichyl-phosphate mannosyltransferase polypeptide... [more]
AOW01273.15.300e-1054.29hypothetical protein YALI1_B07538g [Yarrowia lipol... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000554NSK000554Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03050.1NO07G03050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581007gene_2636Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03050.1NO07G03050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03050 ID=NO07G03050|Name=NO07G03050|organism=Nannochloropsis oceanica|type=gene|length=662bp
ATGGGGgtaagtgactaaacaagatttttgagtgtctctccatctgtgct
tccactgcctccgtcccttacccacttacactcacttacgcagTCGGACC
AACTCGCGGGGGCCTTCTTGCTCGCCGTGGCCGTCATTGTCTTCGTCTAC
TACACGCTTTGGGTCATAGTATTGgtaagtagccattcgtacggtcatat
aatccgtcatgggtattcaccgcggctgtgtatgttaaaagttgtgtgtg
tgccttgcggcggagtaatagcatgcgcttataccgagtcttgacctccc
caccctctcggcccacctgtgaccacgatcccctctcacttgctttcgtg
gatgtcgcatcaatgctaattctgggctggtggactcgccagcgtgtgtc
tttgtacctgtagtgctcatgtcctcctcctgccccccaaaaccagCCAT
TCATCGACCCCGACGTAGGCCTTCACGCTTTCTTCCCTCCTCGATTTTAC
GCAATCGCTATTCCTACCGTCCTCCTCGTCGTTTTTGTCGGCCTTGTGAC
TCTGTTTATTGGCCTAACCATGCTCAGGGCTGCGTCGGCGGAGAAGCGGA
AAAAGAAGCAGCCACAAGCATCTACGGCGTCGGCGAAAAATAAAAGGAAG
AAGGTTACGTAA
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protein sequence of NO07G03050.1

>NO07G03050.1-protein ID=NO07G03050.1-protein|Name=NO07G03050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MGSDQLAGAFLLAVAVIVFVYYTLWVIVLPFIDPDVGLHAFFPPRFYAIA
IPTVLLVVFVGLVTLFIGLTMLRAASAEKRKKKQPQASTASAKNKRKKVT
*
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Synonyms
Publications