NO07G03020, NO07G03020 (gene) Nannochloropsis oceanica

Overview
NameNO07G03020
Unique NameNO07G03020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length943
Alignment locationchr7:845532..846474 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:845532..846474 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_024173649.1 (uncharacterized protein LOC112179462 [Rosa chinensis] >PRQ17362.1 hypothetical protein RchiOBHm_Chr7g0194141 [Rosa chinensis])

HSP 1 Score: 85.5 bits (210), Expect = 1.700e-13
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 0 
Query:   49 TSSSIVSMSTSIEEGPSSPAATSTPTGSSDTGHKADPPCKKYP-----KCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAG 153
            + S+I+  STS     S    T++P+       K++ P K+ P      C    + KGC+G G+IQGGIATFP  GWWPIKAYRPCP   E+G  YKR+GQ   E   G
Sbjct:   39 SKSTILLCSTS---SASVAEDTASPSPDDSLAAKSESPIKELPLSACKSCGREEVEKGCNGEGRIQGGIATFPGFGWWPIKAYRPCPGFLESGGRYKRQGQSLDEVAFG 144
[Close]
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_009358632.1 (PREDICTED: uncharacterized protein LOC103949251 [Pyrus x bretschneideri])

HSP 1 Score: 85.1 bits (209), Expect = 2.200e-13
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 0 
Query:   83 ADPPCKKYP-----KCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAG 153
            + PP ++ P      C    + KGC+G G+IQGGIATFP  GWWPIKAYRPCP   E+G  Y+R+GQ   E   G
Sbjct:   71 SQPPTQQLPLSGCKSCGREEVEKGCNGEGRIQGGIATFPGFGWWPIKAYRPCPGFVESGGRYRRQGQSLDEVAFG 145
[Close]
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_016737244.1 (PREDICTED: uncharacterized protein LOC107947182 [Gossypium hirsutum] >XP_016737245.1 PREDICTED: uncharacterized protein LOC107947182 [Gossypium hirsutum])

HSP 1 Score: 85.1 bits (209), Expect = 2.200e-13
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 0 
Query:   84 DPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAG 153
            DPP +    C    L +GC+G G+IQGGIAT P  GWWPIKAYRPCPA   +G  Y R+GQ   E  +G
Sbjct:    6 DPPFRGCKACGKEELERGCNGEGRIQGGIATVPGFGWWPIKAYRPCPAFVASGGRYTRRGQSMDEVASG 74
[Close]
BLAST of NO07G03020 vs. NCBI_GenBank
Match: NP_001239929.1 (uncharacterized protein LOC100788535 [Glycine max] >ACU20755.1 unknown [Glycine max] >KHN16729.1 hypothetical protein glysoja_002826 [Glycine soja])

HSP 1 Score: 84.7 bits (208), Expect = 2.800e-13
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 0 
Query:   35 MPVHSIVAARRRALTSSSIVSMSTSIEEGPS-SPAATSTPTGSSDTGHKADPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERRTRT 159
            +P +  +++ +  ++  S    ++ IEEGPS SP  TS        G KA         C    + +GC+G G+IQGGIAT P  GWWPIKAYRPCPA   +G  Y+R+GQ   E ++G  +T+T
Sbjct:   23 IPTYPSLSSSKLTVSLCSPSPPTSVIEEGPSPSPELTS--------GCKA---------CGREEVEQGCNGEGRIQGGIATVPGFGWWPIKAYRPCPAFVASGGRYRRQGQSMDEVVSGSGKTKT 130
[Close]
BLAST of NO07G03020 vs. NCBI_GenBank
Match: KRH41341.1 (hypothetical protein GLYMA_08G024100 [Glycine max])

HSP 1 Score: 84.7 bits (208), Expect = 2.800e-13
Identity = 50/125 (40.00%), Postives = 71/125 (56.80%), Query Frame = 0 
Query:   35 MPVHSIVAARRRALTSSSIVSMSTSIEEGPS-SPAATSTPTGSSDTGHKADPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERRTRT 159
            +P +  +++ +  ++  S    ++ IEEGPS SP  TS        G KA         C    + +GC+G G+IQGGIAT P  GWWPIKAYRPCPA   +G  Y+R+GQ   E ++G  +T+T
Sbjct:   14 IPTYPSLSSSKLTVSLCSPSPPTSVIEEGPSPSPELTS--------GCKA---------CGREEVEQGCNGEGRIQGGIATVPGFGWWPIKAYRPCPAFVASGGRYRRQGQSMDEVVSGSGKTKT 121
[Close]
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_018824389.1 (PREDICTED: uncharacterized protein LOC108993809 isoform X1 [Juglans regia])

HSP 1 Score: 84.7 bits (208), Expect = 2.800e-13
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 0 
Query:   93 CNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSE--FIAGERRTRTE 160
            C    + KGC+G G+IQGGIAT P  GWWPIKAYRPCP    +G  Y+R+GQ   E  F  GERRT +E
Sbjct:   93 CGREEMEKGCNGEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGRYRRQGQSMDEVAFGRGERRTSSE 161
[Close]
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_018824390.1 (PREDICTED: uncharacterized protein LOC108993809 isoform X2 [Juglans regia])

HSP 1 Score: 84.7 bits (208), Expect = 2.800e-13
Identity = 39/69 (56.52%), Postives = 46/69 (66.67%), Query Frame = 0 
Query:   93 CNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSE--FIAGERRTRTE 160
            C    + KGC+G G+IQGGIAT P  GWWPIKAYRPCP    +G  Y+R+GQ   E  F  GERRT +E
Sbjct:   93 CGREEMEKGCNGEGRIQGGIATIPGFGWWPIKAYRPCPGFLASGGRYRRQGQSMDEVAFGRGERRTSSE 161
[Close]
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_003566123.1 (uncharacterized protein LOC100836439 [Brachypodium distachyon] >KQK03466.1 hypothetical protein BRADI_2g08030v3 [Brachypodium distachyon])

HSP 1 Score: 84.3 bits (207), Expect = 3.700e-13
Identity = 48/113 (42.48%), Postives = 63/113 (55.75%), Query Frame = 0 
Query:   43 ARRRALTSSSIVSMSTSIEEGPSSPAATSTPTGSSDTGHKADPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERR 156
            AR   + SSS  S+ T  +EG S   A + P  ++   +K DP  +    C      +GC+G G+I GGIA  PL GWWPIKAYRPCP    +G  Y+R GQ   + IAG+ R
Sbjct:   45 ARGNLICSSSSPSVVTK-QEGDS--PAKALPASAAPVSYKDDPNFRGCKGCGREETERGCNGEGRIMGGIAAVPLFGWWPIKAYRPCPGFVASGGRYRRYGQSMDDVIAGKGR 154
[Close]
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_016565941.1 (PREDICTED: uncharacterized protein LOC107864167 [Capsicum annuum])

HSP 1 Score: 84.3 bits (207), Expect = 3.700e-13
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 0 
Query:   93 CNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGE 154
            C G  +  GC+G G+IQGGIAT P  GWWPIKAYRPCPA   +G  YKR GQ   E ++G+
Sbjct:   93 CGGVEIESGCNGEGRIQGGIATVPGFGWWPIKAYRPCPAFVASGGRYKRFGQSMDEVVSGK 153
[Close]
BLAST of NO07G03020 vs. NCBI_GenBank
Match: PHT92227.1 (hypothetical protein T459_00109 [Capsicum annuum])

HSP 1 Score: 84.3 bits (207), Expect = 3.700e-13
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 0 
Query:   93 CNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGE 154
            C G  +  GC+G G+IQGGIAT P  GWWPIKAYRPCPA   +G  YKR GQ   E ++G+
Sbjct:   97 CGGVEIESGCNGEGRIQGGIATVPGFGWWPIKAYRPCPAFVASGGRYKRFGQSMDEVVSGK 157
The following BLAST results are available for this feature:
BLAST of NO07G03020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024173649.11.700e-1344.04uncharacterized protein LOC112179462 [Rosa chinens... [more]
XP_009358632.12.200e-1350.67PREDICTED: uncharacterized protein LOC103949251 [P... [more]
XP_016737244.12.200e-1353.62PREDICTED: uncharacterized protein LOC107947182 [G... [more]
NP_001239929.12.800e-1340.00uncharacterized protein LOC100788535 [Glycine max]... [more]
KRH41341.12.800e-1340.00hypothetical protein GLYMA_08G024100 [Glycine max][more]
XP_018824389.12.800e-1356.52PREDICTED: uncharacterized protein LOC108993809 is... [more]
XP_018824390.12.800e-1356.52PREDICTED: uncharacterized protein LOC108993809 is... [more]
XP_003566123.13.700e-1342.48uncharacterized protein LOC100836439 [Brachypodium... [more]
XP_016565941.13.700e-1357.38PREDICTED: uncharacterized protein LOC107864167 [C... [more]
PHT92227.13.700e-1357.38hypothetical protein T459_00109 [Capsicum annuum][more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000556NSK000556Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03020.1NO07G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628647gene_2634Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100194g5gene3478Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03020.1NO07G03020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03020 ID=NO07G03020|Name=NO07G03020|organism=Nannochloropsis oceanica|type=gene|length=943bp
ATGGCCCGCCGCGCTGCAATCATCGGTACGCCCGCTCCAGTCCTCCTCTT
CCTTGCTGTCATTTCTATCCTTATCGGCACGTCCTTATCGGAGGCGTTTA
TCATGCCCGTCCACTCCATTGTCGCTGCTAGAAGAAGAGCGCTCACTTCA
TCTTCGATCGTGTCGATGAGCACCAGCATCGAGGAAGGCCCCTCTTCCCC
TGCCGCCACTTCCACGCCCACTGGCAGCAGCGATACGGGTCATAAGGCTG
ATCCCCCATGCAAAAAGTACCCCAAATGCAACGGGGCCTATCTAGGCAAA
GGTTGCGACGGCGCGGGCAAGATCCAAGGCGGCATTGCCACCTTTCCGCT
TTTGGGCTGGTGGCCGATCAAGgtaaaagagaatggtcgaaaaaaagaga
ggggttaatggataataaccgctctttaatgtttctgttctttggggctt
tgccgttgtacggagcgctcgcggttgcgtgtgagtgtttgtctttgtgt
gtgtgtgtgtctctcggttgggggacttgtctctgcaggcaatcatgcct
gctccttagttaagtccgccgcattaacatatgttcgtgctcggcgtctt
tcttttgctcgcatcattgcctcccccagaatttctaatgcgcttcgtaa
ggacgggattgcttactttccttgcgccttaatgagccaaagatgccagc
caccatttggttatatccatctctctttttattattccattgtttctagt
ttacccctcccgcttgactacctaccaaatttaccaatgcctgacgcata
aattacacacttactattctttcaagGCATACAGGCCATGCCCGGCTTTG
ACCGAGGCCGGCTATGGATACAAGCGGAAAGGACAGGACTTCTCGGAGTT
TATCGCAGGCGAGCGACGCACGAGGACCGAGGATGACGAATGA
back to top

protein sequence of NO07G03020.1

>NO07G03020.1-protein ID=NO07G03020.1-protein|Name=NO07G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MARRAAIIGTPAPVLLFLAVISILIGTSLSEAFIMPVHSIVAARRRALTS
SSIVSMSTSIEEGPSSPAATSTPTGSSDTGHKADPPCKKYPKCNGAYLGK
GCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFI
AGERRTRTEDDE*
back to top
Synonyms
Publications