NO07G03020, NO07G03020 (gene) Nannochloropsis oceanica

Overview
NameNO07G03020
Unique NameNO07G03020
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length943
Alignment locationchr7:845532..846474 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:845532..846474 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
BLAST of NO07G03020 vs. NCBI_GenBank
Match: EWM27074.1 (hypothetical protein Naga_100194g5 [Nannochloropsis gaditana])

HSP 1 Score: 164.9 bits (416), Expect = 2.200e-37
Identity = 95/157 (60.51%), Postives = 110/157 (70.06%), Query Frame = 0
Query:   11 PAPVLLFLAVISILIGTSLSEAFIM---PVHSIVAARRRALTSSSIVSMSTSIEEGPSSPAATSTPTGS--SDTGHKADPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERRTRTEDDE 163
            P   L  LAVIS+L    LSEAFI+   P   +V  RR    + SI+ MST   E  +S +  S+ T S  SDT  K+  PCK +PKC+GAYL +GC G GKIQGGIATFPLLGWWPIKAYRPCP+ TEAGYGYKRKGQDFSEFIAGERR + E +E
Sbjct:   44 PMYTLSLLAVISLLASMLLSEAFIVCTKPSPEVVVRRR----THSILFMSTDALEKAASSSTVSSDTSSAESDTVIKSAGPCKNFPKCDGAYLNRGCGGTGKIQGGIATFPLLGWWPIKAYRPCPSATEAGYGYKRKGQDFSEFIAGERRKKPEGEE 196          
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_021692701.1 (uncharacterized protein LOC110673803 [Hevea brasiliensis])

HSP 1 Score: 95.9 bits (237), Expect = 1.200e-16
Identity = 54/114 (47.37%), Postives = 68/114 (59.65%), Query Frame = 0
Query:   48 LTSSSIVSMSTSIEEGPSSPAATSTPTGS-SDTGHKADPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSE--FIAGERRTRT 159
            L+SSS  S+++  E+ P  P   + P  S S T    +PP      C    + KGC+G G+IQGGIATFP  GWWPIKAYRPCP    +G  Y+R+GQ   E  F  GE+RTRT
Sbjct:   45 LSSSSPSSLTSVAEDNPLPPPPCARPVQSESATVDSGEPPVGGCKACGRQEIEKGCNGEGRIQGGIATFPGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDEVAFGRGEKRTRT 158          
BLAST of NO07G03020 vs. NCBI_GenBank
Match: CEM04168.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 91.7 bits (226), Expect = 2.300e-15
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 0
Query:   90 YPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAG 153
            +P+C+G  L +GCDG G+IQGGI   PL  WWPIK YRPCP+   AGY Y+R GQ + E + G
Sbjct:   45 FPRCDGKGLARGCDGQGRIQGGIGAIPLFSWWPIKVYRPCPSFLAAGYQYRRAGQSWDEIVYG 107          
BLAST of NO07G03020 vs. NCBI_GenBank
Match: CBJ30785.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 88.2 bits (217), Expect = 2.600e-14
Identity = 43/93 (46.24%), Postives = 56/93 (60.22%), Query Frame = 0
Query:   68 AATSTPTGSSDTGHKADPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERRTRTED 161
            AA + P GSSD        C  YP+C+G Y  +GCDG G+I GG+    L+ W PIKAYRPCP+ TEA Y Y R+GQ  +E +   R+   +D
Sbjct:   50 AAVTAPPGSSDDA------CPGYPRCSGEYRDRGCDGTGRISGGVGA--LVPWLPIKAYRPCPSFTEAKYKYTRQGQSLNEVVFARRQGTMDD 134          
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_004298921.1 (PREDICTED: uncharacterized protein LOC101295130 [Fragaria vesca subsp. vesca])

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13
Identity = 37/69 (53.62%), Postives = 43/69 (62.32%), Query Frame = 0
Query:   84 DPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAG 153
            +PP      C    + KGC+G G IQGGIATFP  GWWPIKAYRPCP   E+G  Y+R+GQ   E   G
Sbjct:   75 EPPFSACKSCGREEMEKGCNGEGSIQGGIATFPGFGWWPIKAYRPCPGFLESGGRYRRQGQSLDEVAFG 143          
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_006580516.1 (PREDICTED: uncharacterized protein LOC100810596 isoform X2 [Glycine max])

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 0
Query:   60 IEEGPS-SPAATSTPTGSSD--TGHKADPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERRTRT 159
            IEEGPS SP        SS+  +G KA         C    + +GC+G G+IQGGIAT P LGWWPIKAYRPCPA   +G  Y+R+GQ   E ++G  +++T
Sbjct:   50 IEEGPSPSPDELPVVVDSSEFTSGCKA---------CGREEIEQGCNGEGRIQGGIATVPGLGWWPIKAYRPCPAFMASGGRYRRQGQSMDEVVSGSGKSKT 142          
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_014631329.1 (PREDICTED: uncharacterized protein LOC100810596 isoform X1 [Glycine max] >KHM99888.1 hypothetical protein glysoja_017586 [Glycine soja] >KRH60061.1 hypothetical protein GLYMA_05G218000 [Glycine max])

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 0
Query:   60 IEEGPS-SPAATSTPTGSSD--TGHKADPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERRTRT 159
            IEEGPS SP        SS+  +G KA         C    + +GC+G G+IQGGIAT P LGWWPIKAYRPCPA   +G  Y+R+GQ   E ++G  +++T
Sbjct:   50 IEEGPSPSPDELPVVVDSSEFTSGCKA---------CGREEIEQGCNGEGRIQGGIATVPGLGWWPIKAYRPCPAFMASGGRYRRQGQSMDEVVSGSGKSKT 142          
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_022640005.1 (uncharacterized protein LOC106768868 isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   93 CNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERRTRT 159
            C    + KGC+G G+IQGGIAT P  GWWPIKAYRPCPA   +G  Y+R+GQ   E ++G  +T T
Sbjct:   85 CGREEIEKGCNGEGRIQGGIATVPGFGWWPIKAYRPCPAFVASGGRYRRQGQSMDEVVSGSGKTST 150          
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_014509718.1 (uncharacterized protein LOC106768868 isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   93 CNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERRTRT 159
            C    + KGC+G G+IQGGIAT P  GWWPIKAYRPCPA   +G  Y+R+GQ   E ++G  +T T
Sbjct:   85 CGREEIEKGCNGEGRIQGGIATVPGFGWWPIKAYRPCPAFVASGGRYRRQGQSMDEVVSGSGKTST 150          
BLAST of NO07G03020 vs. NCBI_GenBank
Match: XP_014631331.1 (PREDICTED: uncharacterized protein LOC100810596 isoform X3 [Glycine max])

HSP 1 Score: 85.9 bits (211), Expect = 1.300e-13
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 0
Query:   60 IEEGPS-SPAATSTPTGSSD--TGHKADPPCKKYPKCNGAYLGKGCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFIAGERRTRT 159
            IEEGPS SP        SS+  +G KA         C    + +GC+G G+IQGGIAT P LGWWPIKAYRPCPA   +G  Y+R+GQ   E ++G  +++T
Sbjct:   50 IEEGPSPSPDELPVVVDSSEFTSGCKA---------CGREEIEQGCNGEGRIQGGIATVPGLGWWPIKAYRPCPAFMASGGRYRRQGQSMDEVVSGSGKSKT 142          
The following BLAST results are available for this feature:
BLAST of NO07G03020 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27074.12.200e-3760.51hypothetical protein Naga_100194g5 [Nannochloropsi... [more]
XP_021692701.11.200e-1647.37uncharacterized protein LOC110673803 [Hevea brasil... [more]
CEM04168.12.300e-1555.56unnamed protein product [Vitrella brassicaformis C... [more]
CBJ30785.12.600e-1446.24conserved unknown protein [Ectocarpus siliculosus][more]
XP_004298921.11.300e-1353.62PREDICTED: uncharacterized protein LOC101295130 [F... [more]
XP_006580516.11.300e-1347.06PREDICTED: uncharacterized protein LOC100810596 is... [more]
XP_014631329.11.300e-1347.06PREDICTED: uncharacterized protein LOC100810596 is... [more]
XP_022640005.11.300e-1354.55uncharacterized protein LOC106768868 isoform X1 [V... [more]
XP_014509718.11.300e-1354.55uncharacterized protein LOC106768868 isoform X2 [V... [more]
XP_014631331.11.300e-1347.06PREDICTED: uncharacterized protein LOC100810596 is... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000556NSK000556Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03020.1NO07G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628647gene_2634Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100194g5gene3478Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03020.1NO07G03020.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03020 ID=NO07G03020|Name=NO07G03020|organism=Nannochloropsis oceanica|type=gene|length=943bp
ATGGCCCGCCGCGCTGCAATCATCGGTACGCCCGCTCCAGTCCTCCTCTT
CCTTGCTGTCATTTCTATCCTTATCGGCACGTCCTTATCGGAGGCGTTTA
TCATGCCCGTCCACTCCATTGTCGCTGCTAGAAGAAGAGCGCTCACTTCA
TCTTCGATCGTGTCGATGAGCACCAGCATCGAGGAAGGCCCCTCTTCCCC
TGCCGCCACTTCCACGCCCACTGGCAGCAGCGATACGGGTCATAAGGCTG
ATCCCCCATGCAAAAAGTACCCCAAATGCAACGGGGCCTATCTAGGCAAA
GGTTGCGACGGCGCGGGCAAGATCCAAGGCGGCATTGCCACCTTTCCGCT
TTTGGGCTGGTGGCCGATCAAGgtaaaagagaatggtcgaaaaaaagaga
ggggttaatggataataaccgctctttaatgtttctgttctttggggctt
tgccgttgtacggagcgctcgcggttgcgtgtgagtgtttgtctttgtgt
gtgtgtgtgtctctcggttgggggacttgtctctgcaggcaatcatgcct
gctccttagttaagtccgccgcattaacatatgttcgtgctcggcgtctt
tcttttgctcgcatcattgcctcccccagaatttctaatgcgcttcgtaa
ggacgggattgcttactttccttgcgccttaatgagccaaagatgccagc
caccatttggttatatccatctctctttttattattccattgtttctagt
ttacccctcccgcttgactacctaccaaatttaccaatgcctgacgcata
aattacacacttactattctttcaagGCATACAGGCCATGCCCGGCTTTG
ACCGAGGCCGGCTATGGATACAAGCGGAAAGGACAGGACTTCTCGGAGTT
TATCGCAGGCGAGCGACGCACGAGGACCGAGGATGACGAATGA
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protein sequence of NO07G03020.1

>NO07G03020.1-protein ID=NO07G03020.1-protein|Name=NO07G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MARRAAIIGTPAPVLLFLAVISILIGTSLSEAFIMPVHSIVAARRRALTS
SSIVSMSTSIEEGPSSPAATSTPTGSSDTGHKADPPCKKYPKCNGAYLGK
GCDGAGKIQGGIATFPLLGWWPIKAYRPCPALTEAGYGYKRKGQDFSEFI
AGERRTRTEDDE*
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Synonyms
Publications