NO07G03010, NO07G03010 (gene) Nannochloropsis oceanica

Overview
NameNO07G03010
Unique NameNO07G03010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3579
Alignment locationchr7:841100..844678 -

Link to JBrowse

Properties
Property NameValue
DescriptionZn(2)-C6 fungal-type DNA-binding domain protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:841100..844678 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0009058biosynthetic process
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR036864Zn2-C6_fun-type_DNA-bd_sf
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
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BLAST of NO07G03010 vs. NCBI_GenBank
Match: EWM27081.1 (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 444.1 bits (1141), Expect = 8.300e-121
Identity = 273/380 (71.84%), Postives = 294/380 (77.37%), Query Frame = 0 
Query:   15 QQRRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRPIKYNASNGDAAAGAAGGADGVLVSRDVKPGRSLSNDSSTQWAADYMAFTFSNLLKAGAVHRPKTFAVLRVWMLFSLYYGVDLTRGFLSVALALMDATVQDLQRLPDMMVEAPMALPTGDLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASLDDGVSAVICCVGCRGGTGKVYCNAKFKSTFFSSEDLTYRTLNESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRHGNDFLAIVRLRCLTLNNGDYGADILTIEPAPTSNVDGGGSSDGVTSISGPG 395
            Q RRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRP+K  +S  +      G  +  L +R+  P R++S+++STQWAADYMAFTFSNLLK+GAVHR KTFAVLRVWMLFS+YYGVDLTRGFLSVALALMDA++QDLQRLP+ M  + +ALP                                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            ASLDDGVSAVICCVGCRGGTGKVYCN KFKSTFFSSEDLT RTL+ESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDR G+DFLAIVRLRCLTLNNGDYGADILT+EPAP S      S    T   GPG
Sbjct:   23 QPRRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQPRAQGRPMKSKSSESEGIISPEGMIESTLATREATPARAVSSETSTQWAADYMAFTFSNLLKSGAVHRMKTFAVLRVWMLFSMYYGVDLTRGFLSVALALMDASIQDLQRLPETMASS-VALPPDQ------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPLDPGVLQPFIASLDDGVSAVICCVGCRGGTGKVYCNDKFKSTFFSSEDLTQRTLSESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRQGSDFLAIVRLRCLTLNNGDYGADILTVEPAPMSKYVLQTSDGAGTGQEGPG 371
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BLAST of NO07G03010 vs. NCBI_GenBank
Match: EWM24903.1 (hypothetical protein Naga_100116g15 [Nannochloropsis gaditana])

HSP 1 Score: 101.7 bits (252), Expect = 1.000e-17
Identity = 56/137 (40.88%), Postives = 85/137 (62.04%), Query Frame = 0 
Query:  250 ASLDDGVSAVICCVGCRGGTGKVYCNAKFKSTFFSSEDLTYRTLNESTLPVYVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRHGNDFLAIVRLRCLTLNNGDYGADILTIEPAPTSNVDGGGSSDG 387
            ++LDD VSAV C V   GG  +V  N +FK TF+S+ ++  R   E   P +++A ++A EDR +F++++T   FG  T + +++ IVKV D     FLA++RLR  TL  G Y A +L+I PAP+S    GG+ +G
Sbjct:   97 SALDDRVSAVACTVSLVGGACRVLVNDRFKDTFWSASEILSRLSKEVAGPPFLFAALVAVEDRLDFLEAMTAYVFGPPTQV-ELSQIVKVRDAGEQTFLAMIRLRTATLAGGAYLATMLSISPAPSSKYIRGGNKEG 232
The following BLAST results are available for this feature:
BLAST of NO07G03010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27081.18.300e-12171.84Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
EWM24903.11.000e-1740.88hypothetical protein Naga_100116g15 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000557NSK000557Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03010.1NO07G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|334587gene_2631Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100194g7gene3476Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03010.1NO07G03010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03010 ID=NO07G03010|Name=NO07G03010|organism=Nannochloropsis oceanica|type=gene|length=3579bp
ATGCAAGGCCATGAGAAACCCCCTTTAGTGGCCTTCGTTAACCAGCAGCG
CCGGACCTGTACGGCATGCAAGGCAAGCAAGGTGAAGTGTGATCGACAAG
CACCCGTCTGCGGCAGgtaggtatcttggttgaccgggggtgcccatgct
agcagctggcttcgactcacacgcgctctctcccctttctcttgaaaatc
tgcgaccgactcgcaccgcaccagGTGCGCGCGTCTCCGGCTAACCTGTG
TCCAACAGCCACGCGCGCAAGGTCGCCCTATCAAGgtacatgaataggca
gggctgatgcggtgaccaacataaggaaaatcattgttctccacctagtt
tggcagaagtctccctgccccacatgagcgacaccctaaaattttgagct
aacggccaaaaagcacctacacgcattaacatgccatctgcatgaataca
cacaatttacatgcatatcactacagTATAATGCCAGTAATGGCGATGCA
GCGGCGGGCGCCGCGGGCGGTGCCGATGGTGTGCTCGTGTCGCGGGATGT
CAAACCCGGGCGGAGCCTCTCGAACGATTCGTCCACGCAATGGGCAGCGG
ATTACATGGCATTTACATTCTCCAACCTCCTCAAAGCAGGGGCTGTACAT
CGTCCCAAGACCTTTGCCGTCCTgtacgtagtgatggagtggattctctc
ttttccctccctcttcttctctatttatcccccgacttcagttagtcttg
atggccaaaattgcttttcttgcagggacatggcagattttctgaatctc
agacccatatattatatcaccccacaacccgttcctattcggggaaagat
ttgcaaagcccttgctaaaacctctcatccattttcccacgcctccattt
tttatttatttttccttttctcccccattgcgggaatatatctcccatct
gacacacactttgtctcatgacacgccactctattcgctcagcatctcag
tgaatgtgtgtcacccgtgataatgcccatggatacggtttgcttgcatt
ttacatcgtcactcatcccctccctttcttcctatattccaccctttttt
ctagACGAGTATGGATGCTGTTTTCCCTCTACTATGGCGTGGACCTCACC
CGTGGATTCCTCTCTGTGGCCCTGGCCCTGATGGATGCCACTGTCCAGGA
CCTTCAACGCTTACCAGACATGATGGTCGAGGCCCCCATGGCTCTTCCCA
CCGGTGACCTGTCTTCCGGCACCCTCCCCGCTACCAGGTCCTCCTCTTCG
GCCTCTGACACGATCAGCGGCAGTACTCTCAGCGGCGGCGAAGGGGATGG
TACTGCTGCTGCTGCACCTGCTGCTGCACCTGCTGCTGCTCCTGCTGAGT
CAGCGCCGTCGTCGTCAGCGCCATCGTCAACGACGGGCTCGGCTCCTCTT
GACCCGGCGGTGCTGCAGCCTTTCATTGCCTCCCTTGATGATGGTGTTAG
TGCAGTGATTTGCTGTGTGGGCTGCAGGGGGGGGACGGGGAAAGTCTATT
GTAATGCAAAATTCAAATCGACGTTTTTCTCGTCTGAGGACCTAACGTAT
AGGACACTGAATGAGAGCACTTTGCCTGTGTATGTGTATGCCTGTATCAT
CGCGCCGGAGGACCGGGCGGAGTTTGTCGATTCTTTGACCAATGTGTGTT
TTGGGACGCAGACGGCCTTGCCACAAGTGACGCATATAGTGAAGGTGCTG
GACAGGCACGGGAATGACTTCTTGGCGATAGTACGGTTGAGGTGCTTAAC
ATTGAACAATGGGGATTACGGTGCGGATATTCTGACCATCGAGCCAGCGC
CCACGTCCAAgtacgtgttgcagacaagtgaaattgttggagggctgggg
ggaggaaaaggtgaggagggggagcagaagagggggggagtggggtggcg
agtgcgacgagcagTGTGGATGGAGGGGGAAGTTCAGATGGGGTGACGAG
TATTAGTGGTCCGGGTTCCAACGGCCCTAATGTGTCGGGCCAAAAGAATG
CTGGGGGAGGCGGGAAGGGAGCCGGGAGAGGGGATGCAGCAGCCGGGGGA
TCGAAGAGAGGGAGAAAAGCAGCGAACACGGCGAGGCCTTTGCCGCAGCA
GACGGCGTCGCCGGCGGTGGTTGGACCTTTGCCAGATTCGCCGCAGGTAC
CACCAATGAATGAGGGGGGAGGGGGAGGGTCGTGGGCGACATTGCCTGGA
TATGGTGCGTATGGAGGTGGGGGATGCCTGTCAGGAGGCATGATGGGAGG
GATGGGAGGAGTGTTGGGAGGAGTGATGGGGGGGGGAAGAGGGGGAGGGG
AAATGCAGCCTGGTATGCCGCCAGGGGCAATGCCGACGGGAGGAATAGGG
CTTGCGAGAGGAGGAGAGGTGAGAGGGAGTAATAATGGGCGGAAAAGGTC
GCACCCGGAGGACAACGGAGGTGAAGGTGGAGGGCGGATGGAAGGTCCTG
GGCCCTCCACTCCTTTTGGGGGCATGATACCTGCTCCGCGTGGTGGTGGT
AGTGGAGGAGAAGAAGGAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGG
AGGGTATGATCATCCGCGGCAAGCGATGGGTGCTGGCTCAATTAAGCCAG
GGGTCTTTCCCGGCTTTCCTGGCGGTGGGGGAGGCGTGGCGGGAGGGATG
GGGGGAATGACAGGCTCCCTCCCTTCTGGCGTTCCGATGAATCATACCCG
CGCATACTCGATAGCGCAGCAGCACCAGCATCAGCACCAACAACCTCAGC
ATCAGCAGCAACATGTACCACAACAGCAGCAGTGGCAGCACCAGCAGCAA
TGGCAGCAGCAACATCAATGGCAGCAACAACAGCAGCAACATATGTATCA
ACAGCAGCAGCTTCAGCAACAGCAGATGGCACAGCAGCAGCAGCAGCAGC
ATCAGCAGCAGCAACTGTGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCCGCCGCCGCCGCCTTATCCGTAACCAGGTGTACCTTGAATGTTACG
TGGGGTGGAAATGGGGGAGGGCTAGGGCAAATACTGTACCGAATATCACC
CGACCAGAATAAAATTCAACAGGAGATGAGAGGGTGAACAAGGAATTTAT
GACACGAGGGCCCGCAACACCCAAAGCGAGCGAGGTTAAGCAAGGGAATT
GCAAAAATGAGATGTAAAAGGAAACAGCATCAAAAACAGGGAGGGTAGAA
GGACGAGACGGAGTCTTTAGAGCAAAAGAATGAGGCTGATGATAACCATC
AACCACAAATGTATCAAATGACGCATGCAGATTTGAGGGAAAGGTTTGAG
AACATACCAAAGTCACAGATCATGTTCAGTCCCCACGGGAAAACGTTTTG
CCAATCAACTTATAGCTTGCTTGGGCTGGAAGCCATCTTCGGGATAGCAT
CATATGGAGATGGCAAAGAAAAAGAAAAAGGGCATACTGGTGCAGTTTGG
GGATAACAACAGAATAGGAGAACACGAACATTGAACAGAAAGCGGAGAAA
AATTGTTTTAAGACCTGCGTACGTAAAGA
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protein sequence of NO07G03010.1

>NO07G03010.1-protein ID=NO07G03010.1-protein|Name=NO07G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=731bp
MQGHEKPPLVAFVNQQRRTCTACKASKVKCDRQAPVCGRCARLRLTCVQQ
PRAQGRPIKYNASNGDAAAGAAGGADGVLVSRDVKPGRSLSNDSSTQWAA
DYMAFTFSNLLKAGAVHRPKTFAVLRVWMLFSLYYGVDLTRGFLSVALAL
MDATVQDLQRLPDMMVEAPMALPTGDLSSGTLPATRSSSSASDTISGSTL
SGGEGDGTAAAAPAAAPAAAPAESAPSSSAPSSTTGSAPLDPAVLQPFIA
SLDDGVSAVICCVGCRGGTGKVYCNAKFKSTFFSSEDLTYRTLNESTLPV
YVYACIIAPEDRAEFVDSLTNVCFGTQTALPQVTHIVKVLDRHGNDFLAI
VRLRCLTLNNGDYGADILTIEPAPTSNVDGGGSSDGVTSISGPGSNGPNV
SGQKNAGGGGKGAGRGDAAAGGSKRGRKAANTARPLPQQTASPAVVGPLP
DSPQVPPMNEGGGGGSWATLPGYGAYGGGGCLSGGMMGGMGGVLGGVMGG
GRGGGEMQPGMPPGAMPTGGIGLARGGEVRGSNNGRKRSHPEDNGGEGGG
RMEGPGPSTPFGGMIPAPRGGGSGGEEGGAGAGAGAGAGGYDHPRQAMGA
GSIKPGVFPGFPGGGGGVAGGMGGMTGSLPSGVPMNHTRAYSIAQQHQHQ
HQQPQHQQQHVPQQQQWQHQQQWQQQHQWQQQQQQHMYQQQQLQQQQMAQ
QQQQQHQQQQLWQQQQQQQQQQQPPPPPYP*
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Synonyms
Publications