NO07G03000, NO07G03000 (gene) Nannochloropsis oceanica

Overview
NameNO07G03000
Unique NameNO07G03000
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1093
Alignment locationchr7:839983..841075 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:839983..841075 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G03000 vs. NCBI_GenBank
Match: EWM27071.1 (hypothetical protein Naga_100194g9 [Nannochloropsis gaditana])

HSP 1 Score: 214.5 bits (545), Expect = 2.800e-52
Identity = 111/198 (56.06%), Postives = 148/198 (74.75%), Query Frame = 0 
Query:    1 MAIPIQYAKQTCIIANVVSCILSAFALILSYKGLHLYRQQQDPSSCPLGVLLLGVLPAKAVSLSLFPAISLGWVALAIYLAQPQLKGLEGKIIDNGTFANIQRQCGTVMHRVNVGRMLCSVFSVLFLWRMSIFYKQLDET----EDGKEEDQFWFGYTMLMTGFGLLAALLNTLLYHRLQVSNRNLKQALKLRFRRTL 195
            M  PIQ+A+Q+C IAN+VS IL+ F+  L Y+G  +   +      P   +++   PAK VS+S+FPA+SLGW+ALAIY AQPQLKG +G+ ID+ TF+ +QRQCG ++HRVN+ RMLCSVFSVLFLWR+SIF+ +L ++    +  +EE + WF YT LMTG GL AALLNT LYHRL +S+R LKQAL+LRFRR++
Sbjct:    1 METPIQHARQSCTIANLVSSILALFSSTLLYQGFRIEGNRLVSLQRP---VIMTYRPAKVVSMSVFPAMSLGWIALAIYFAQPQLKGFQGREIDHATFSVMQRQCGIIVHRVNIARMLCSVFSVLFLWRLSIFFHELGKSTIAADGSREEVEKWFTYTKLMTGMGLSAALLNTYLYHRLVLSHRRLKQALRLRFRRSM 195
The following BLAST results are available for this feature:
BLAST of NO07G03000 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27071.12.800e-5256.06hypothetical protein Naga_100194g9 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000559NSK000559Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G03000.1NO07G03000.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580990gene_2630Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100194g9gene3474Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G03000.1NO07G03000.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G03000 ID=NO07G03000|Name=NO07G03000|organism=Nannochloropsis oceanica|type=gene|length=1093bp
TGGGAATGAGGCGCAGACATTTGCTATCCAGGAAGGGCTGATCCACACAC
ACACACAATACAATACGATGATACTATATGATGTATGACGCCTCGCTTGT
TCCTCACAATCGTATTGACCACAGGAGCTCTCAGGTCACAATCAAACACC
GCATGCACAGGCAAGGACAGGGAATAGAGGAGAAAGGCAAGACAGCAACA
GTTCGGTGTGCTGGATTGAGGCTGACCGCACCGTCACGGAGACCTCCTCA
AAGGACCAGACTCGACCTCCTATCCCTAAAGGTATTATGGCCATTCCAAT
ACAATACGCCAAACAGACTTGCATCATTGCCAATGTAGTCTCCTGCATCC
TTTCCGCTTTTGCTCTCATTCTCTCCTACAAAGGCCTGCACCTATACCGG
CAACAACAAGACCCCTCATCTTGTCCTCTTGGTGTCCTGCTCCTTGGCGT
CCTGCCCGCCAAAGCCGTGTCCCTCAGTTTATTCCCCGCGATCTCACTAG
GATGGGTGGCCCTTGCCATTTATCTCGCCCAACCACAGCTTAAAGGACTG
GAGGGCAAAATCATAGACAATGGCACTTTTGCCAATATTCAACGGCAGTG
TGGCACGGTAATGCATCGTGTCAATGTAGGACGGATGCTCTGTAGCGTGT
TTTCAGTGTTATTTTTGTGGCGTATGAGTATTTTTTACAAGCAACTGGAC
GAAACTGAGGACGGGAAGGAGGAGGATCAGTTTTGGTTTGGGTATACTAT
GCTCATGACGGGCTTTGGGCTGTTGGCGGCGCTGTTGAACACGCTGCTGT
ACCATCGATTGCAGGTGTCAAACAGAAATTTGAAGCAAGCATTGAAACTG
CGGTTTCGACGAACACTGTAGCACTGTCGCCAGCAACCACTGAATTTAAA
TAAATCAACAAATAACTTAGAGTAATAGGAGGATTGAGAGATCATCAGGC
TACGTCGTGCTCGTAAAAGTAAGTAGGGGGCAAACATTGCACGTACCATA
GGCGCACATTTCCCCCAATGGAAGAGGAATAGAAACCAAAACAAAAGGAG
AGCTTGGAAAAAAAAAGTTATAGCAAACATGTTTCTCCGGGGC
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protein sequence of NO07G03000.1

>NO07G03000.1-protein ID=NO07G03000.1-protein|Name=NO07G03000.1|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MAIPIQYAKQTCIIANVVSCILSAFALILSYKGLHLYRQQQDPSSCPLGV
LLLGVLPAKAVSLSLFPAISLGWVALAIYLAQPQLKGLEGKIIDNGTFAN
IQRQCGTVMHRVNVGRMLCSVFSVLFLWRMSIFYKQLDETEDGKEEDQFW
FGYTMLMTGFGLLAALLNTLLYHRLQVSNRNLKQALKLRFRRTL*
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Synonyms
Publications