NO07G02990, NO07G02990 (gene) Nannochloropsis oceanica

Overview
NameNO07G02990
Unique NameNO07G02990
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1511
Alignment locationchr7:838430..839940 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:838430..839940 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G02990 vs. NCBI_GenBank
Match: EWM27073.1 (hypothetical protein Naga_100194g10 [Nannochloropsis gaditana])

HSP 1 Score: 250.4 bits (638), Expect = 1.200e-62
Identity = 161/302 (53.31%), Postives = 178/302 (58.94%), Query Frame = 0 
Query:   51 AVLNVETRLMHAHNELFQKQLRAMHMLVEEQKSMPSGFRVLEQVLTGNAEGTEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKWGKDGLPSITPTTGCSHGEVYCKNLCRSCYQRWRRATVRHGGLELVETGRGYQASAPALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGPPIEVIRTARNLKKIPTKRQPDLCVLCELRPILCRSLCNGCYQRWHKARKSAMERGEPEVPCPSIEILE 353
            A LNVE++LMH HNELFQ QLRAMH L E QKSMP+GF VLE+ L G+    +                                             XXXXXXXXXXXXXXXXXXXXXX      K G+DGLP+ITP TGC+HGE+YC+NLCRSCYQRWRRATVRHGG +LV  G+GYQ SAP                                               PGPPI++ RT R LKK P KRQPDLCV+CELRPILCRSLCNGCYQRWHKARK+A ERGEPEVPCPSI ILE
Sbjct:   32 AALNVESQLMHMHNELFQSQLRAMHCLAEAQKSMPTGFAVLERALAGSTACDQ------------------------YQSAEVIGANKSGRQLAGGGHXXXXXXXXXXXXXXXXXXXXXXKKQKTSKCGEDGLPTITPATGCTHGEIYCRNLCRSCYQRWRRATVRHGGADLVVPGKGYQESAP--PPAIDDSSEAADSYGTGGGMDGDGSTMEEDGSVYGGRRSMSKRRGPGPPIDMTRTGRALKKPPPKRQPDLCVVCELRPILCRSLCNGCYQRWHKARKAASERGEPEVPCPSIAILE 307
The following BLAST results are available for this feature:
BLAST of NO07G02990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27073.11.200e-6253.31hypothetical protein Naga_100194g10 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000561NSK000561Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02990.1NO07G02990.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100194g10gene3473Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02990.1NO07G02990.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02990 ID=NO07G02990|Name=NO07G02990|organism=Nannochloropsis oceanica|type=gene|length=1511bp
AAAACCACAGGATCAAAAAGTCAATGACTGTTCCAAACGATGGAGAGGCT
GTGGCTCCTTCCGCTCCGCCCACTTCTTTCCACCCCTCCTCCTCAGCCTC
GTCCGCCACCTCCTCTCCTTCCTACGCCCATCTCCAGGCACAGGCGCATC
AACACCACAGTAACGGCACCGCCGCGGTACTGAATGTGGAGACACGGCTC
ATGCACGCCCATAACGAGCTCTTTCAGAAGCAGCTTCGGGCCATGCATAT
GTTGGTGGAGGAGCAAAAAAGTATGCCGTCGGGCTTTCGGGTCCTTGAAC
AAGTTCTGACCGGCAACGCGGAGGGGACCGAAGGAGCAGGACGCAGTGGT
GGTGGTAACGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGGGGGAGG
AGGACGAACAGCAGCGGCCGCAGCAGGAGGGGGGTTTGGTGGAAGCGGAC
GCTTGGGGATGAGCAGCAGTCGAGGCTCGAGTGCGGGTGGAGGAGGAACA
GGAGGAGCGGCAGGGACGACAGCAGCGACGGCAAAGAAGCAAAAGACAAG
TAAGTGGGGAAAGGATGGATTGCCTAGCATTACACCGACGACGGGGTGTT
CGCATGGGGAGGTATATTGTAAAAACTTATGCCGGAGTTGCTATCAGCGG
TGGAGGCGGGCAACGGTGAGACACGGGGGGTTGGAGCTGGTAGAAACGGG
AAGAGGGTACCAAGCAAGTGCACCTGCGCTGCTACTGGACGACAGGAGCG
AGGGGGGGGAATCTTTTGGTGGGATGGGAGGAGGGGATGATGATTCTACG
ATGGATGATGAGGCAAGTGGGGGCGGGGTGATAGGGAGTAGGCGGGCGAG
TTCTAAGAGGAGGGGGCCGGGGCCGCCGATAGAAGTAATTCGGACGGCCA
GGAACTTGAAAAAGATTCCTACGAAGAGGCAGCCAGATTTATGCGTATTA
TGTGAGTTGCGGCCGATTCTGTGTCGAAGTTTATGTAATGGATGCTATCA
ACGGTGGCACAAGGCGAGGAAAAGCGCCATGGAACGGGGCGAGCCCGAGG
TCCCGTGTCCAAGTATTGAAATTCTTGAGCAAAGGAAACTGCAGGCGGCA
GCTGGTGGAAAAGAGGCGGAAGATGGGGGGGGGGCGATGGAGGGAGGAGG
GACGGGAGGAGGGGGGAGACAAGGGAGTATTGGGGAGGGCGATGCGGCGT
CAATGGGATTTTCTCCGTCGGGGGAGGGCGGTGGGGAGGGTGGGAAAGGC
GGGCATGCGTTTCCACATCCACTTTCGCAGGTGCCTCACCATCCGTTGCA
GCAGGAGGATGGCCCGCCGTCTGGAGGGGAAACCGGGGTTCGGCAGCCTC
AGCAGCAGCATCATCATCAGGAGCAGCCTCAGCAGCAACAGCAGCAGCAT
ATGCAGCAACAACTTCAGTCTCAGCCTAAGCAGCAGGAGCAAGACATACA
AGAGCAAGAACCGCAGCAGCAACAGCATGCAATGGAAGAAGAGCGAGCAC
CTGAGGCATAG
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protein sequence of NO07G02990.1

>NO07G02990.1-protein ID=NO07G02990.1-protein|Name=NO07G02990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=496bp
MTVPNDGEAVAPSAPPTSFHPSSSASSATSSPSYAHLQAQAHQHHSNGTA
AVLNVETRLMHAHNELFQKQLRAMHMLVEEQKSMPSGFRVLEQVLTGNAE
GTEGAGRSGGGNGGGGGEGGGGEGGGGRTAAAAAGGGFGGSGRLGMSSSR
GSSAGGGGTGGAAGTTAATAKKQKTSKWGKDGLPSITPTTGCSHGEVYCK
NLCRSCYQRWRRATVRHGGLELVETGRGYQASAPALLLDDRSEGGESFGG
MGGGDDDSTMDDEASGGGVIGSRRASSKRRGPGPPIEVIRTARNLKKIPT
KRQPDLCVLCELRPILCRSLCNGCYQRWHKARKSAMERGEPEVPCPSIEI
LEQRKLQAAAGGKEAEDGGGAMEGGGTGGGGRQGSIGEGDAASMGFSPSG
EGGGEGGKGGHAFPHPLSQVPHHPLQQEDGPPSGGETGVRQPQQQHHHQE
QPQQQQQQHMQQQLQSQPKQQEQDIQEQEPQQQQHAMEEERAPEA*
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Synonyms
Publications