NO07G02970, NO07G02970 (gene) Nannochloropsis oceanica

Overview
NameNO07G02970
Unique NameNO07G02970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length767
Alignment locationchr7:834874..835640 -

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Properties
Property NameValue
Description30s ribosomal protein s17
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:834874..835640 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR000266Ribosomal_S17
Homology
BLAST of NO07G02970 vs. NCBI_GenBank
Match: PIA42908.1 (hypothetical protein AQUCO_02000390v1 [Aquilegia coerulea])

HSP 1 Score: 81.3 bits (199), Expect = 3.700e-12
Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0
Query:  105 EAPKPPRNSMVGVVVSDKMDKSIVVKVSRL---KLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            EA KP    +VG+VVS+KM KS+VV V RL   KL+  Y+  KRT  K MAHDE NEC +GD VR+ PSRPLSKRK++ + EI++K
Sbjct:   11 EAMKP----VVGMVVSNKMQKSVVVAVDRLFHHKLYNRYI--KRT-SKFMAHDETNECNIGDRVRLDPSRPLSKRKNWVVAEILKK 89          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: PKL36130.1 (30S ribosomal protein S17 [Spirochaetae bacterium HGW-Spirochaetae-1])

HSP 1 Score: 81.3 bits (199), Expect = 3.700e-12
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 0
Query:  108 KPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            K  R  ++G VVSDKMDK+IVV++  L +   Y    R  KKI +HDE NEC VGDIVRV+ +RPLS+ K + + EII K
Sbjct:    2 KSNRKQIIGKVVSDKMDKTIVVEIENLVMHPLYKKSVRRTKKIKSHDEKNECQVGDIVRVEETRPLSREKRYRMVEIIEK 81          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_004824763.1 (MULTISPECIES: 30S ribosomal protein S17 [Peptoniphilus] >EFA90075.1 30S ribosomal protein S17 [Peptoniphilus lacrimalis 315-B] >EFK38485.1 30S ribosomal protein S17 [Peptoniphilus sp. oral taxon 836 str. F0141] >KGF36496.1 30S ribosomal protein S17 [Peptoniphilus lacrimalis DNF00528])

HSP 1 Score: 80.9 bits (198), Expect = 4.900e-12
Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 0
Query:  111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            R ++VG VVSDKMDK+IVV V   K    Y  R +  KK  AHDE NECG+GD VR+  +RPLSK K F L +II K
Sbjct:    6 RKTIVGSVVSDKMDKTIVVAVESFKTHPIYKKRYKNTKKYKAHDENNECGIGDKVRIMETRPLSKDKRFRLVKIIEK 82          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: OGR36511.1 (30S ribosomal protein S17 [Desulfobacula sp. RIFOXYB2_FULL_45_6])

HSP 1 Score: 80.9 bits (198), Expect = 4.900e-12
Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 0
Query:  104 LEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRK---RTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            +E  K  +  ++G+++SDKM+KS+VV+V R   F+P+ V K   + FKK  AHDE NEC +GD+V++  +RPLSK K F + EI++K
Sbjct:    1 METIKKNKKELIGLIISDKMEKSVVVQVER---FVPHAVYKKFVKQFKKYHAHDEKNECKIGDMVKIIETRPLSKLKRFRVSEIVKK 84          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: KVI07722.1 (hypothetical protein Ccrd_013917 [Cynara cardunculus var. scolymus])

HSP 1 Score: 80.5 bits (197), Expect = 6.400e-12
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 0
Query:  113 SMVGVVVSDKMDKSIVVKVSRL---KLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            S+VG+VVS+KM KS+VV V RL   KL+  Y+  KRT  K MAHDE N+C +GD VR+ PSRPLSKRK++ + EI++K
Sbjct:    3 SVVGMVVSNKMQKSVVVAVDRLFHNKLYNRYV--KRT-SKFMAHDEQNQCNIGDRVRLDPSRPLSKRKNWVVAEILKK 77          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: AMR07853.1 (ribosomal protein S17 [uncultured bacterium] >PID30083.1 30S ribosomal protein S17 [Candidatus Cloacimonetes bacterium])

HSP 1 Score: 80.5 bits (197), Expect = 6.400e-12
Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 0
Query:  116 GVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            GVVVSDKMDK+IVVKV R      Y    RT KK  AHDE NEC +GD+V++K  RPLSK K++ L EII +
Sbjct:   11 GVVVSDKMDKTIVVKVERQYKHPLYKKVVRTHKKFKAHDENNECRIGDVVKIKEHRPLSKEKNWMLDEIITR 82          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: PIA42909.1 (hypothetical protein AQUCO_02000390v1 [Aquilegia coerulea] >PIA42910.1 hypothetical protein AQUCO_02000390v1 [Aquilegia coerulea])

HSP 1 Score: 80.5 bits (197), Expect = 6.400e-12
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 0
Query:  114 MVGVVVSDKMDKSIVVKVSRL---KLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            +VG+VVS+KM KS+VV V RL   KL+  Y+  KRT  K MAHDE NEC +GD VR+ PSRPLSKRK++ + EI++K
Sbjct:    4 VVGMVVSNKMQKSVVVAVDRLFHHKLYNRYI--KRT-SKFMAHDETNECNIGDRVRLDPSRPLSKRKNWVVAEILKK 77          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_013637819.1 (30S ribosomal protein S17 [Desulfurobacterium thermolithotrophum] >ADY72860.1 30S ribosomal protein S17 [Desulfurobacterium thermolithotrophum DSM 11699])

HSP 1 Score: 80.1 bits (196), Expect = 8.300e-12
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 0
Query:  111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKL 192
            R   VGVVVSDKMDK++VV+V+R      Y  R +  KK MAHDE N+C +GD+V++  +RP SKRK + + EII K  KL
Sbjct:    9 RKVRVGVVVSDKMDKTVVVRVTREFRHPVYGKRVKFSKKYMAHDENNQCQIGDVVKIMETRPFSKRKRWRVVEIIEKAKKL 89          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: PIE53541.1 (30S ribosomal protein S17 [Candidatus Fermentibacteria bacterium])

HSP 1 Score: 80.1 bits (196), Expect = 8.300e-12
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 0
Query:  111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            R  + GVVVSD+MDK+IVV+VS L+    Y  R RT KK  AHDE N+CG+GD+V +  +RP S+ K + L EI+ K
Sbjct:    9 RRVLRGVVVSDRMDKTIVVEVSTLRAHPTYRKRYRTSKKYYAHDEQNQCGLGDVVTISETRPTSRLKRWRLLEIVEK 85          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_022847343.1 (30S ribosomal protein S17 [Desulfurobacterium sp. TC5-1])

HSP 1 Score: 79.7 bits (195), Expect = 1.100e-11
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 0
Query:  111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKL 192
            R   VGVVVSDKMDK++VV+V+R      Y  R +  KK MAHDE N+C VGD+V++  +RPLS+ K + + EII K  KL
Sbjct:    9 RKVRVGVVVSDKMDKTVVVRVTREFRHPVYGKRVKFSKKYMAHDETNQCQVGDVVKIMETRPLSRHKRWRVIEIIEKAKKL 89          
The following BLAST results are available for this feature:
BLAST of NO07G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
PIA42908.13.700e-1256.98hypothetical protein AQUCO_02000390v1 [Aquilegia c... [more]
PKL36130.13.700e-1252.5030S ribosomal protein S17 [Spirochaetae bacterium ... [more]
WP_004824763.14.900e-1255.84MULTISPECIES: 30S ribosomal protein S17 [Peptoniph... [more]
OGR36511.14.900e-1245.9830S ribosomal protein S17 [Desulfobacula sp. RIFOX... [more]
KVI07722.16.400e-1257.69hypothetical protein Ccrd_013917 [Cynara carduncul... [more]
AMR07853.16.400e-1258.33ribosomal protein S17 [uncultured bacterium] >PID3... [more]
PIA42909.16.400e-1258.44hypothetical protein AQUCO_02000390v1 [Aquilegia c... [more]
WP_013637819.18.300e-1251.8530S ribosomal protein S17 [Desulfurobacterium ther... [more]
PIE53541.18.300e-1251.9530S ribosomal protein S17 [Candidatus Fermentibact... [more]
WP_022847343.11.100e-1151.8530S ribosomal protein S17 [Desulfurobacterium sp. ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000564NSK000564Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02970.1NO07G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580982gene_2628Nannochloropsis oceanica (N. oceanica CCMP1779)gene
rpsQgene3471Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02970.1NO07G02970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02970 ID=NO07G02970|Name=NO07G02970|organism=Nannochloropsis oceanica|type=gene|length=767bp
ATGTTTCGACGAGTAGGAGCCGGCCTCAGTCGGTGGGTGTGCGGCGCGCC
CGCGTCGTTGCCTGCGGTCGCTGCCCCTCGCTCCTCCATCATCATCCCAT
ACAGCAGCAGCAGCTGCAGTCGGAGCCTCAGTGTCCTGGCCTCGTCCAAC
CGAAAGGCCTGCCCCTTCCTTCTCTCCCAACATAAGCGCATGCCACAGCA
GCAGCATGAACTTCTACCACTACCACGAGGACTGTCGACGAGCAGAGACA
GCAGCGCGGCGCAACACGAGACAGACGCAGCAGAGGGAGCAGCGCCAGAA
GGGGACTTGTTGGAGGCGCCCAAGCCGCCGCGCAATTCCATGGTGGGTGT
TGTAGTATCGGACAAGATGGACAAGTCCATTGTGGTCAAGgtgagctttt
gagtgcttgggtggcttgggtgggcggcatggattaggcaaaaagggagg
gggatatgcctgaggatgcttttctattgtgtgcaatgtcttaaaacaca
cacacactctgtaggaacagtttcgattcctaccttatcccccacacatc
cataaacatatttaacacctgatagGTCTCACGTTTGAAGCTTTTTTTGC
CTTACATGGTGCGGAAGCGGACGTTTAAGAAGATTATGGCCCACGACGAG
GCCAACGAGTGTGGGGTTGGGGATATCGTTCGTGTCAAGCCATCGCGGCC
GTTGAGCAAGCGAAAGAGCTTTGCCTTGCATGAGATTATTCGCAAGGACC
CCAAGCTGACGATATGA
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protein sequence of NO07G02970.1

>NO07G02970.1-protein ID=NO07G02970.1-protein|Name=NO07G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MFRRVGAGLSRWVCGAPASLPAVAAPRSSIIIPYSSSSCSRSLSVLASSN
RKACPFLLSQHKRMPQQQHELLPLPRGLSTSRDSSAAQHETDAAEGAAPE
GDLLEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKI
MAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKLTI*
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Synonyms
Publications