NO07G02970, NO07G02970 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G02970 vs. NCBI_GenBank
Match: PIA42908.1 (hypothetical protein AQUCO_02000390v1 [Aquilegia coerulea]) HSP 1 Score: 81.3 bits (199), Expect = 3.700e-12 Identity = 49/86 (56.98%), Postives = 62/86 (72.09%), Query Frame = 0 Query: 105 EAPKPPRNSMVGVVVSDKMDKSIVVKVSRL---KLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 EA KP +VG+VVS+KM KS+VV V RL KL+ Y+ KRT K MAHDE NEC +GD VR+ PSRPLSKRK++ + EI++K Sbjct: 11 EAMKP----VVGMVVSNKMQKSVVVAVDRLFHHKLYNRYI--KRT-SKFMAHDETNECNIGDRVRLDPSRPLSKRKNWVVAEILKK 89
BLAST of NO07G02970 vs. NCBI_GenBank
Match: PKL36130.1 (30S ribosomal protein S17 [Spirochaetae bacterium HGW-Spirochaetae-1]) HSP 1 Score: 81.3 bits (199), Expect = 3.700e-12 Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 0 Query: 108 KPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 K R ++G VVSDKMDK+IVV++ L + Y R KKI +HDE NEC VGDIVRV+ +RPLS+ K + + EII K Sbjct: 2 KSNRKQIIGKVVSDKMDKTIVVEIENLVMHPLYKKSVRRTKKIKSHDEKNECQVGDIVRVEETRPLSREKRYRMVEIIEK 81
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_004824763.1 (MULTISPECIES: 30S ribosomal protein S17 [Peptoniphilus] >EFA90075.1 30S ribosomal protein S17 [Peptoniphilus lacrimalis 315-B] >EFK38485.1 30S ribosomal protein S17 [Peptoniphilus sp. oral taxon 836 str. F0141] >KGF36496.1 30S ribosomal protein S17 [Peptoniphilus lacrimalis DNF00528]) HSP 1 Score: 80.9 bits (198), Expect = 4.900e-12 Identity = 43/77 (55.84%), Postives = 51/77 (66.23%), Query Frame = 0 Query: 111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 R ++VG VVSDKMDK+IVV V K Y R + KK AHDE NECG+GD VR+ +RPLSK K F L +II K Sbjct: 6 RKTIVGSVVSDKMDKTIVVAVESFKTHPIYKKRYKNTKKYKAHDENNECGIGDKVRIMETRPLSKDKRFRLVKIIEK 82
BLAST of NO07G02970 vs. NCBI_GenBank
Match: OGR36511.1 (30S ribosomal protein S17 [Desulfobacula sp. RIFOXYB2_FULL_45_6]) HSP 1 Score: 80.9 bits (198), Expect = 4.900e-12 Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 0 Query: 104 LEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRK---RTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 +E K + ++G+++SDKM+KS+VV+V R F+P+ V K + FKK AHDE NEC +GD+V++ +RPLSK K F + EI++K Sbjct: 1 METIKKNKKELIGLIISDKMEKSVVVQVER---FVPHAVYKKFVKQFKKYHAHDEKNECKIGDMVKIIETRPLSKLKRFRVSEIVKK 84
BLAST of NO07G02970 vs. NCBI_GenBank
Match: KVI07722.1 (hypothetical protein Ccrd_013917 [Cynara cardunculus var. scolymus]) HSP 1 Score: 80.5 bits (197), Expect = 6.400e-12 Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 0 Query: 113 SMVGVVVSDKMDKSIVVKVSRL---KLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 S+VG+VVS+KM KS+VV V RL KL+ Y+ KRT K MAHDE N+C +GD VR+ PSRPLSKRK++ + EI++K Sbjct: 3 SVVGMVVSNKMQKSVVVAVDRLFHNKLYNRYV--KRT-SKFMAHDEQNQCNIGDRVRLDPSRPLSKRKNWVVAEILKK 77
BLAST of NO07G02970 vs. NCBI_GenBank
Match: AMR07853.1 (ribosomal protein S17 [uncultured bacterium] >PID30083.1 30S ribosomal protein S17 [Candidatus Cloacimonetes bacterium]) HSP 1 Score: 80.5 bits (197), Expect = 6.400e-12 Identity = 42/72 (58.33%), Postives = 50/72 (69.44%), Query Frame = 0 Query: 116 GVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 GVVVSDKMDK+IVVKV R Y RT KK AHDE NEC +GD+V++K RPLSK K++ L EII + Sbjct: 11 GVVVSDKMDKTIVVKVERQYKHPLYKKVVRTHKKFKAHDENNECRIGDVVKIKEHRPLSKEKNWMLDEIITR 82
BLAST of NO07G02970 vs. NCBI_GenBank
Match: PIA42909.1 (hypothetical protein AQUCO_02000390v1 [Aquilegia coerulea] >PIA42910.1 hypothetical protein AQUCO_02000390v1 [Aquilegia coerulea]) HSP 1 Score: 80.5 bits (197), Expect = 6.400e-12 Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 0 Query: 114 MVGVVVSDKMDKSIVVKVSRL---KLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 +VG+VVS+KM KS+VV V RL KL+ Y+ KRT K MAHDE NEC +GD VR+ PSRPLSKRK++ + EI++K Sbjct: 4 VVGMVVSNKMQKSVVVAVDRLFHHKLYNRYI--KRT-SKFMAHDETNECNIGDRVRLDPSRPLSKRKNWVVAEILKK 77
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_013637819.1 (30S ribosomal protein S17 [Desulfurobacterium thermolithotrophum] >ADY72860.1 30S ribosomal protein S17 [Desulfurobacterium thermolithotrophum DSM 11699]) HSP 1 Score: 80.1 bits (196), Expect = 8.300e-12 Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 0 Query: 111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKL 192 R VGVVVSDKMDK++VV+V+R Y R + KK MAHDE N+C +GD+V++ +RP SKRK + + EII K KL Sbjct: 9 RKVRVGVVVSDKMDKTVVVRVTREFRHPVYGKRVKFSKKYMAHDENNQCQIGDVVKIMETRPFSKRKRWRVVEIIEKAKKL 89
BLAST of NO07G02970 vs. NCBI_GenBank
Match: PIE53541.1 (30S ribosomal protein S17 [Candidatus Fermentibacteria bacterium]) HSP 1 Score: 80.1 bits (196), Expect = 8.300e-12 Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 0 Query: 111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 R + GVVVSD+MDK+IVV+VS L+ Y R RT KK AHDE N+CG+GD+V + +RP S+ K + L EI+ K Sbjct: 9 RRVLRGVVVSDRMDKTIVVEVSTLRAHPTYRKRYRTSKKYYAHDEQNQCGLGDVVTISETRPTSRLKRWRLLEIVEK 85
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_022847343.1 (30S ribosomal protein S17 [Desulfurobacterium sp. TC5-1]) HSP 1 Score: 79.7 bits (195), Expect = 1.100e-11 Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 0 Query: 111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKL 192 R VGVVVSDKMDK++VV+V+R Y R + KK MAHDE N+C VGD+V++ +RPLS+ K + + EII K KL Sbjct: 9 RKVRVGVVVSDKMDKTVVVRVTREFRHPVYGKRVKFSKKYMAHDETNQCQVGDVVKIMETRPLSRHKRWRVIEIIEKAKKL 89 The following BLAST results are available for this feature:
BLAST of NO07G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G02970 ID=NO07G02970|Name=NO07G02970|organism=Nannochloropsis oceanica|type=gene|length=767bpback to top protein sequence of NO07G02970.1 >NO07G02970.1-protein ID=NO07G02970.1-protein|Name=NO07G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bpback to top Synonyms
Publications
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