NO07G02970, NO07G02970 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G02970 vs. NCBI_GenBank
Match: EWM27075.1 (30s ribosomal protein s17 [Nannochloropsis gaditana]) HSP 1 Score: 169.1 bits (427), Expect = 1.400e-38 Identity = 103/199 (51.76%), Postives = 126/199 (63.32%), Query Frame = 0 Query: 1 MFRRVGAGLSRWVCGAPASLPAVAAPRSSIIIPYSSSSC-SRSLSVLASSNRKACPFLLSQHKRMPQQQ-----HELLPLPRGLSTSRDSSAAQHETDAAEGAAPEGDLLEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKLTI 194 M G GL RWV A + P + P + +C SRSL+ S+ + + R + L+ RG ST R+S AA + AE E ++LE PKPPRNS+VGVV+SDKMDKSIVVKVSRLKL+LPYMVRK+ KKIMAHDE NECG+GD VR+KPSRPLSKRK F LHE+IR++PKLTI Sbjct: 1 MLGHAGLGLRRWVGNA---VKFTTKPDAISFPPCRTLTCTSRSLAAFVSTFDGSSSLVFPDCNRASLRHXXXXGSPLMAFSRGFSTPRESPAADLDV-PAESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNPKLTI 195
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_012869920.1 (30S ribosomal protein S17 [Thermanaerovibrio acidaminovorans] >YP_003317689.1 30S ribosomal protein S17 [Thermanaerovibrio acidaminovorans DSM 6589] >ACZ19407.1 ribosomal protein S17 [Thermanaerovibrio acidaminovorans DSM 6589]) HSP 1 Score: 84.3 bits (207), Expect = 4.400e-13 Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 0 Query: 104 LEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDP 190 +E KP R GVVVSDKMDK++VVKVSR+ Y KK MAHDEAN+C +GD+V+++ +RPLS+ K + + EI+ + P Sbjct: 1 MEERKPYRKVRTGVVVSDKMDKTVVVKVSRMSKHALYGKPVLRVKKYMAHDEANDCRIGDLVKIEETRPLSRHKRWRVVEILERAP 86
BLAST of NO07G02970 vs. NCBI_GenBank
Match: OPX30368.1 (30S ribosomal protein S17 [Gemmatimonadaceae bacterium 4484_173]) HSP 1 Score: 84.0 bits (206), Expect = 5.800e-13 Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0 Query: 103 LLEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 + EA K R + GVVVSDKMDK+IVV+VS +K Y R +T KK AHDE N+CGVGD+V + +RP S+ K + L E++ K Sbjct: 1 MAEATKTNRRVLRGVVVSDKMDKTIVVEVSTIKSHPVYRKRFKTSKKYYAHDEQNQCGVGDVVTISETRPTSRLKRWRLLEVVEK 85
BLAST of NO07G02970 vs. NCBI_GenBank
Match: OGQ93712.1 (30S ribosomal protein S17 [Deltaproteobacteria bacterium RIFOXYC2_FULL_48_10] >OGR21407.1 30S ribosomal protein S17 [Desulfobacula sp. RIFOXYA12_FULL_46_16]) HSP 1 Score: 83.6 bits (205), Expect = 7.500e-13 Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 0 Query: 104 LEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRK---RTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 +E K + ++G+++SDKMDKS+VV+V R F+P+ V K + FKK AHDE NEC +GD+V++ +RPLSK K F + EI++K Sbjct: 1 METTKKNKKELIGLIISDKMDKSVVVQVER---FIPHAVYKKFVKQFKKYHAHDEKNECKIGDMVKIIETRPLSKLKRFRVSEIVKK 84
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_006583241.1 (30S ribosomal protein S17 [Thermanaerovibrio velox] >EHM09748.1 30S ribosomal protein S17 [Thermanaerovibrio velox DSM 12556]) HSP 1 Score: 82.8 bits (203), Expect = 1.300e-12 Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 0 Query: 104 LEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDP 190 +E KP R GVVVSDKMDK++VVKVSR+ Y KK MAHDEAN+C VGD V+++ +RPLS+ K + + EI+ + P Sbjct: 1 MEERKPYRKVRTGVVVSDKMDKTVVVKVSRMSKHALYGKPVLRVKKYMAHDEANDCRVGDRVKIEETRPLSRHKRWRVVEILERAP 86
BLAST of NO07G02970 vs. NCBI_GenBank
Match: OGR10681.1 (30S ribosomal protein S17 [Desulfobacula sp. GWF2_41_7] >OGR24618.1 30S ribosomal protein S17 [Desulfobacterales bacterium RIFOXYA12_FULL_46_15]) HSP 1 Score: 82.4 bits (202), Expect = 1.700e-12 Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 0 Query: 104 LEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRK---RTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 +E K + ++G+++SDKMDKS+VV+V R F+P+ V K + FKK AHDE NEC VGD V++ +RPLSK K F + EI++K Sbjct: 1 METIKKNKKELIGLIISDKMDKSVVVQVER---FIPHAVYKKFMKQFKKYHAHDEKNECKVGDTVKIIETRPLSKLKRFRVSEIVKK 84
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_089323417.1 (30S ribosomal protein S17 [Desulfurobacterium atlanticum] >SNR85238.1 SSU ribosomal protein S17P [Desulfurobacterium atlanticum]) HSP 1 Score: 82.4 bits (202), Expect = 1.700e-12 Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 0 Query: 111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKL 192 R VGVVVSDKMDK++VV+V+R Y R + KK MAHDE+N+C +GD+V++ +RPLSKRK + + E+I K KL Sbjct: 9 RKVRVGVVVSDKMDKTVVVRVTREFRHPVYGKRVKFSKKYMAHDESNQCQIGDVVKIMETRPLSKRKRWRVIEVIEKAKKL 89
BLAST of NO07G02970 vs. NCBI_GenBank
Match: XP_021752660.1 (uncharacterized protein LOC110718166 [Chenopodium quinoa] >XP_021752661.1 uncharacterized protein LOC110718166 [Chenopodium quinoa] >XP_021752662.1 uncharacterized protein LOC110718166 [Chenopodium quinoa] >XP_021752663.1 uncharacterized protein LOC110718166 [Chenopodium quinoa] >XP_021752664.1 uncharacterized protein LOC110718166 [Chenopodium quinoa]) HSP 1 Score: 82.4 bits (202), Expect = 1.700e-12 Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 0 Query: 114 MVGVVVSDKMDKSIVVKVSRL---KLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 +VGVVVS+KM KS+VV V RL KLF Y+ KRT K MAHDE NEC +GD VR+ PSRPLSKRK++ + EI++K Sbjct: 4 VVGVVVSNKMQKSVVVAVDRLFHHKLFNRYV--KRT-SKFMAHDEQNECNIGDRVRLDPSRPLSKRKNWTVAEILKK 77
BLAST of NO07G02970 vs. NCBI_GenBank
Match: XP_021842165.1 (uncharacterized protein LOC110782342 [Spinacia oleracea] >XP_021842166.1 uncharacterized protein LOC110782342 [Spinacia oleracea] >KNA17842.1 hypothetical protein SOVF_076610 [Spinacia oleracea]) HSP 1 Score: 81.6 bits (200), Expect = 2.900e-12 Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0 Query: 114 MVGVVVSDKMDKSIVVKVSRL---KLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 +VGVVVS+KM KS+VV V RL KLF Y+ KRT K MAHDE N+C +GD VR+ PSRPLSKRK++ + EI++K Sbjct: 4 LVGVVVSNKMQKSVVVAVDRLFHHKLFNRYV--KRT-SKFMAHDEQNQCNIGDRVRLDPSRPLSKRKNWTVAEILKK 77
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_071028094.1 (30S ribosomal protein S17 [Peptoniphilus sp. KHD4]) HSP 1 Score: 81.6 bits (200), Expect = 2.900e-12 Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 0 Query: 111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188 R ++VGVV SDKM+K+IVV V K Y R + KK AHDE NECG+GD VR+ +RPLSK K F L E+I K Sbjct: 6 RKTIVGVVTSDKMEKTIVVSVESFKTHPIYKKRYKNTKKYKAHDENNECGIGDRVRIMETRPLSKDKRFRLVEVIEK 82 The following BLAST results are available for this feature:
BLAST of NO07G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G02970 ID=NO07G02970|Name=NO07G02970|organism=Nannochloropsis oceanica|type=gene|length=767bpback to top protein sequence of NO07G02970.1 >NO07G02970.1-protein ID=NO07G02970.1-protein|Name=NO07G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bpback to top Synonyms
Publications
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