NO07G02970, NO07G02970 (gene) Nannochloropsis oceanica

Overview
NameNO07G02970
Unique NameNO07G02970
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length767
Alignment locationchr7:834874..835640 -

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Properties
Property NameValue
Description30s ribosomal protein s17
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:834874..835640 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR000266Ribosomal_S17
Homology
BLAST of NO07G02970 vs. NCBI_GenBank
Match: EWM27075.1 (30s ribosomal protein s17 [Nannochloropsis gaditana])

HSP 1 Score: 169.1 bits (427), Expect = 1.400e-38
Identity = 103/199 (51.76%), Postives = 126/199 (63.32%), Query Frame = 0
Query:    1 MFRRVGAGLSRWVCGAPASLPAVAAPRSSIIIPYSSSSC-SRSLSVLASSNRKACPFLLSQHKRMPQQQ-----HELLPLPRGLSTSRDSSAAQHETDAAEGAAPEGDLLEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKLTI 194
            M    G GL RWV  A   +     P +    P  + +C SRSL+   S+   +   +     R   +        L+   RG ST R+S AA  +   AE    E ++LE PKPPRNS+VGVV+SDKMDKSIVVKVSRLKL+LPYMVRK+  KKIMAHDE NECG+GD VR+KPSRPLSKRK F LHE+IR++PKLTI
Sbjct:    1 MLGHAGLGLRRWVGNA---VKFTTKPDAISFPPCRTLTCTSRSLAAFVSTFDGSSSLVFPDCNRASLRHXXXXGSPLMAFSRGFSTPRESPAADLDV-PAESIQGEDEVLENPKPPRNSLVGVVISDKMDKSIVVKVSRLKLYLPYMVRKKAIKKIMAHDEENECGMGDTVRIKPSRPLSKRKRFVLHEVIRRNPKLTI 195          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_012869920.1 (30S ribosomal protein S17 [Thermanaerovibrio acidaminovorans] >YP_003317689.1 30S ribosomal protein S17 [Thermanaerovibrio acidaminovorans DSM 6589] >ACZ19407.1 ribosomal protein S17 [Thermanaerovibrio acidaminovorans DSM 6589])

HSP 1 Score: 84.3 bits (207), Expect = 4.400e-13
Identity = 42/86 (48.84%), Postives = 58/86 (67.44%), Query Frame = 0
Query:  104 LEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDP 190
            +E  KP R    GVVVSDKMDK++VVKVSR+     Y       KK MAHDEAN+C +GD+V+++ +RPLS+ K + + EI+ + P
Sbjct:    1 MEERKPYRKVRTGVVVSDKMDKTVVVKVSRMSKHALYGKPVLRVKKYMAHDEANDCRIGDLVKIEETRPLSRHKRWRVVEILERAP 86          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: OPX30368.1 (30S ribosomal protein S17 [Gemmatimonadaceae bacterium 4484_173])

HSP 1 Score: 84.0 bits (206), Expect = 5.800e-13
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0
Query:  103 LLEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            + EA K  R  + GVVVSDKMDK+IVV+VS +K    Y  R +T KK  AHDE N+CGVGD+V +  +RP S+ K + L E++ K
Sbjct:    1 MAEATKTNRRVLRGVVVSDKMDKTIVVEVSTIKSHPVYRKRFKTSKKYYAHDEQNQCGVGDVVTISETRPTSRLKRWRLLEVVEK 85          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: OGQ93712.1 (30S ribosomal protein S17 [Deltaproteobacteria bacterium RIFOXYC2_FULL_48_10] >OGR21407.1 30S ribosomal protein S17 [Desulfobacula sp. RIFOXYA12_FULL_46_16])

HSP 1 Score: 83.6 bits (205), Expect = 7.500e-13
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 0
Query:  104 LEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRK---RTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            +E  K  +  ++G+++SDKMDKS+VV+V R   F+P+ V K   + FKK  AHDE NEC +GD+V++  +RPLSK K F + EI++K
Sbjct:    1 METTKKNKKELIGLIISDKMDKSVVVQVER---FIPHAVYKKFVKQFKKYHAHDEKNECKIGDMVKIIETRPLSKLKRFRVSEIVKK 84          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_006583241.1 (30S ribosomal protein S17 [Thermanaerovibrio velox] >EHM09748.1 30S ribosomal protein S17 [Thermanaerovibrio velox DSM 12556])

HSP 1 Score: 82.8 bits (203), Expect = 1.300e-12
Identity = 43/86 (50.00%), Postives = 57/86 (66.28%), Query Frame = 0
Query:  104 LEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDP 190
            +E  KP R    GVVVSDKMDK++VVKVSR+     Y       KK MAHDEAN+C VGD V+++ +RPLS+ K + + EI+ + P
Sbjct:    1 MEERKPYRKVRTGVVVSDKMDKTVVVKVSRMSKHALYGKPVLRVKKYMAHDEANDCRVGDRVKIEETRPLSRHKRWRVVEILERAP 86          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: OGR10681.1 (30S ribosomal protein S17 [Desulfobacula sp. GWF2_41_7] >OGR24618.1 30S ribosomal protein S17 [Desulfobacterales bacterium RIFOXYA12_FULL_46_15])

HSP 1 Score: 82.4 bits (202), Expect = 1.700e-12
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 0
Query:  104 LEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRK---RTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            +E  K  +  ++G+++SDKMDKS+VV+V R   F+P+ V K   + FKK  AHDE NEC VGD V++  +RPLSK K F + EI++K
Sbjct:    1 METIKKNKKELIGLIISDKMDKSVVVQVER---FIPHAVYKKFMKQFKKYHAHDEKNECKVGDTVKIIETRPLSKLKRFRVSEIVKK 84          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_089323417.1 (30S ribosomal protein S17 [Desulfurobacterium atlanticum] >SNR85238.1 SSU ribosomal protein S17P [Desulfurobacterium atlanticum])

HSP 1 Score: 82.4 bits (202), Expect = 1.700e-12
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 0
Query:  111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKL 192
            R   VGVVVSDKMDK++VV+V+R      Y  R +  KK MAHDE+N+C +GD+V++  +RPLSKRK + + E+I K  KL
Sbjct:    9 RKVRVGVVVSDKMDKTVVVRVTREFRHPVYGKRVKFSKKYMAHDESNQCQIGDVVKIMETRPLSKRKRWRVIEVIEKAKKL 89          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: XP_021752660.1 (uncharacterized protein LOC110718166 [Chenopodium quinoa] >XP_021752661.1 uncharacterized protein LOC110718166 [Chenopodium quinoa] >XP_021752662.1 uncharacterized protein LOC110718166 [Chenopodium quinoa] >XP_021752663.1 uncharacterized protein LOC110718166 [Chenopodium quinoa] >XP_021752664.1 uncharacterized protein LOC110718166 [Chenopodium quinoa])

HSP 1 Score: 82.4 bits (202), Expect = 1.700e-12
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 0
Query:  114 MVGVVVSDKMDKSIVVKVSRL---KLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            +VGVVVS+KM KS+VV V RL   KLF  Y+  KRT  K MAHDE NEC +GD VR+ PSRPLSKRK++ + EI++K
Sbjct:    4 VVGVVVSNKMQKSVVVAVDRLFHHKLFNRYV--KRT-SKFMAHDEQNECNIGDRVRLDPSRPLSKRKNWTVAEILKK 77          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: XP_021842165.1 (uncharacterized protein LOC110782342 [Spinacia oleracea] >XP_021842166.1 uncharacterized protein LOC110782342 [Spinacia oleracea] >KNA17842.1 hypothetical protein SOVF_076610 [Spinacia oleracea])

HSP 1 Score: 81.6 bits (200), Expect = 2.900e-12
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 0
Query:  114 MVGVVVSDKMDKSIVVKVSRL---KLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            +VGVVVS+KM KS+VV V RL   KLF  Y+  KRT  K MAHDE N+C +GD VR+ PSRPLSKRK++ + EI++K
Sbjct:    4 LVGVVVSNKMQKSVVVAVDRLFHHKLFNRYV--KRT-SKFMAHDEQNQCNIGDRVRLDPSRPLSKRKNWTVAEILKK 77          
BLAST of NO07G02970 vs. NCBI_GenBank
Match: WP_071028094.1 (30S ribosomal protein S17 [Peptoniphilus sp. KHD4])

HSP 1 Score: 81.6 bits (200), Expect = 2.900e-12
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 0
Query:  111 RNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKIMAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRK 188
            R ++VGVV SDKM+K+IVV V   K    Y  R +  KK  AHDE NECG+GD VR+  +RPLSK K F L E+I K
Sbjct:    6 RKTIVGVVTSDKMEKTIVVSVESFKTHPIYKKRYKNTKKYKAHDENNECGIGDRVRIMETRPLSKDKRFRLVEVIEK 82          
The following BLAST results are available for this feature:
BLAST of NO07G02970 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27075.11.400e-3851.7630s ribosomal protein s17 [Nannochloropsis gaditan... [more]
WP_012869920.14.400e-1348.8430S ribosomal protein S17 [Thermanaerovibrio acida... [more]
OPX30368.15.800e-1350.5930S ribosomal protein S17 [Gemmatimonadaceae bacte... [more]
OGQ93712.17.500e-1347.1330S ribosomal protein S17 [Deltaproteobacteria bac... [more]
WP_006583241.11.300e-1250.0030S ribosomal protein S17 [Thermanaerovibrio velox... [more]
OGR10681.11.700e-1248.2830S ribosomal protein S17 [Desulfobacula sp. GWF2_... [more]
WP_089323417.11.700e-1251.8530S ribosomal protein S17 [Desulfurobacterium atla... [more]
XP_021752660.11.700e-1261.04uncharacterized protein LOC110718166 [Chenopodium ... [more]
XP_021842165.12.900e-1259.74uncharacterized protein LOC110782342 [Spinacia ole... [more]
WP_071028094.12.900e-1254.5530S ribosomal protein S17 [Peptoniphilus sp. KHD4][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000564NSK000564Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02970.1NO07G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580982gene_2628Nannochloropsis oceanica (N. oceanica CCMP1779)gene
rpsQgene3471Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02970.1NO07G02970.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02970 ID=NO07G02970|Name=NO07G02970|organism=Nannochloropsis oceanica|type=gene|length=767bp
ATGTTTCGACGAGTAGGAGCCGGCCTCAGTCGGTGGGTGTGCGGCGCGCC
CGCGTCGTTGCCTGCGGTCGCTGCCCCTCGCTCCTCCATCATCATCCCAT
ACAGCAGCAGCAGCTGCAGTCGGAGCCTCAGTGTCCTGGCCTCGTCCAAC
CGAAAGGCCTGCCCCTTCCTTCTCTCCCAACATAAGCGCATGCCACAGCA
GCAGCATGAACTTCTACCACTACCACGAGGACTGTCGACGAGCAGAGACA
GCAGCGCGGCGCAACACGAGACAGACGCAGCAGAGGGAGCAGCGCCAGAA
GGGGACTTGTTGGAGGCGCCCAAGCCGCCGCGCAATTCCATGGTGGGTGT
TGTAGTATCGGACAAGATGGACAAGTCCATTGTGGTCAAGgtgagctttt
gagtgcttgggtggcttgggtgggcggcatggattaggcaaaaagggagg
gggatatgcctgaggatgcttttctattgtgtgcaatgtcttaaaacaca
cacacactctgtaggaacagtttcgattcctaccttatcccccacacatc
cataaacatatttaacacctgatagGTCTCACGTTTGAAGCTTTTTTTGC
CTTACATGGTGCGGAAGCGGACGTTTAAGAAGATTATGGCCCACGACGAG
GCCAACGAGTGTGGGGTTGGGGATATCGTTCGTGTCAAGCCATCGCGGCC
GTTGAGCAAGCGAAAGAGCTTTGCCTTGCATGAGATTATTCGCAAGGACC
CCAAGCTGACGATATGA
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protein sequence of NO07G02970.1

>NO07G02970.1-protein ID=NO07G02970.1-protein|Name=NO07G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MFRRVGAGLSRWVCGAPASLPAVAAPRSSIIIPYSSSSCSRSLSVLASSN
RKACPFLLSQHKRMPQQQHELLPLPRGLSTSRDSSAAQHETDAAEGAAPE
GDLLEAPKPPRNSMVGVVVSDKMDKSIVVKVSRLKLFLPYMVRKRTFKKI
MAHDEANECGVGDIVRVKPSRPLSKRKSFALHEIIRKDPKLTI*
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Synonyms
Publications