NO07G02960, NO07G02960 (gene) Nannochloropsis oceanica

Overview
NameNO07G02960
Unique NameNO07G02960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1170
Alignment locationchr7:832872..834041 -

Link to JBrowse

Properties
Property NameValue
DescriptionTetrapyrrole methylase family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:832872..834041 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008168methyltransferase activity
GO:0008168methyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0032259methylation
Vocabulary: INTERPRO
TermDefinition
IPR0359964pyrrol_Methylase_sf
IPR008189rRNA_ssu_MeTfrase_I
IPR0008784pyrrol_Mease
Homology
[Close]
BLAST of NO07G02960 vs. NCBI_GenBank
Match: WP_024544737.1 (MULTISPECIES: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Synechococcus] >BAW95617.1 hypothetical protein NIES970_05260 [Synechococcus sp. NIES-970])

HSP 1 Score: 213.4 bits (542), Expect = 1.300e-51
Identity = 126/295 (42.71%), Postives = 180/295 (61.02%), Query Frame = 0 
Query:   93 GTIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACXXXXXXXVSGFASTEFVFIGFLPAKSGKSXXXKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQEGSDSPSTASPRGEFTLVLGPLPRMARGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEIK 388
            GT+Y V TP+GNL D+T RA+  L+ VD+IA+EDTR TG LLK   ++  PQ+S+H HN Q R  +L+ + Q +  +IA+VSDAG PGISDPG EL A+   AG+ +VP+PG          SG +  +FVF GFLP K  K     + ++  + R  + YE+P+R+L+TL ++  AD  GG+R V+CARELTKLHEE +RGTL +A+ H+  Q          P+GEFTL+LG  PR    +      +   LQ  + +E LS S A    S+ L +   L R  +Y+++ ++K
Sbjct:    4 GTLYLVGTPIGNLDDMTFRAIATLKTVDLIAAEDTRHTGKLLKHFQIS-TPQISYHDHNRQQRQHQLIAQLQ-DGKNIALVSDAGLPGISDPGFELVASAVEAGIVIVPIPGVSASLTGLIASGLSPEKFVFEGFLPQKK-KDRTALLEQLCQEPRTIIFYEAPHRLLKTLEDL--ADHFGGDRPVVCARELTKLHEEFWRGTLQKALEHYRQQ---------PPKGEFTLILGGAPRAMGVEVPTDTEILAQLQTLMVQEGLSRSAA----SRTLAQTLNLPRRHIYQLSTDLK 280
[Close]
BLAST of NO07G02960 vs. NCBI_GenBank
Match: WP_099104366.1 (16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Nostoc sp. 'Peltigera malacea cyanobiont' DB3992] >PHM05684.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Nostoc sp. 'Peltigera malacea cyanobiont' DB3992])

HSP 1 Score: 213.4 bits (542), Expect = 1.300e-51
Identity = 128/297 (43.10%), Postives = 188/297 (63.30%), Query Frame = 0 
Query:   92 PGTIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACXXXXXXXVSGFASTEFVFIGFLPAKSGKSXXXKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQEGSDSPSTASPRGEFTLVLG--PLPRMARGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEI 387
            PGT+Y V TP+GNL DIT RA+ +L+ VD+IA+EDTR TG LL+   + K PQ+S+H+HN  SR+PEL+    V N +IA+VSDAG PGISDPG EL  AC  AG+ VVP+PGA         +G  +  FVF GFLPAKS +     +  + T+ R  + YESP+R+  TL ++  A+  G +R ++  RELTKL+EE +RGT++EA+ H+  +E         P+GE+TLV+   PL +    +EE+ A +++++      + +S S+A+++    L K   L R  +Y++AL I
Sbjct:    7 PGTLYVVGTPIGNLEDITFRAVRILQTVDIIAAEDTRHTGKLLQHFQV-KTPQVSYHEHNRTSRIPELLEHL-VNNKTIALVSDAGMPGISDPGYELVKACIEAGIAVVPIPGASAAITALSAAGLPTDRFVFEGFLPAKS-QHRQEHLESLQTEARTLIFYESPHRLRDTLQDL--AEVWGSDRQIVLGRELTKLYEEFWRGTIAEAIAHYNQRE---------PQGEYTLVVAGIPLSQPQLTQEELKAELKQLI-----SQGISRSQASRQ----LAKATFLPRRQLYQLALSI 280
[Close]
BLAST of NO07G02960 vs. NCBI_GenBank
Match: WP_103137444.1 (16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Nostoc sp. CENA543] >AUT01052.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Nostoc sp. CENA543])

HSP 1 Score: 213.4 bits (542), Expect = 1.300e-51
Identity = 132/300 (44.00%), Postives = 190/300 (63.33%), Query Frame = 0 
Query:   92 PGTIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACXXXXXXXVSGFASTEFVFIGFLPAKSGKSXXXKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQEGSDSPSTASPRGEFTLVL--GPLPRMARGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEIKGK 390
            PGT+Y V TP+GNL DITLRA+ +L+ VD+IA+EDTR TG LL+ L + K PQ S+H+HN  SR+PEL+   Q    +IA+VSDAG PGISDPG EL  AC AA +PVVP+PGA         +G  + +FVF GFLPAKS +     +  + T+ R  + YESP+R+  TL ++  A+  G +R ++ ARELTKL+EE +RG+L EA+ H+  +E         P+GE+TLV+   P  +    + ++ A + ++++     + +S S+A+++    L K   L RS VY+IAL I  K
Sbjct:    7 PGTLYIVGTPIGNLEDITLRAVRILQNVDLIAAEDTRHTGKLLQHLQV-KTPQTSYHEHNRSSRIPELLEHLQ-NGKAIALVSDAGMPGISDPGYELVKACVAAKIPVVPIPGASAAITALSAAGLPTDKFVFEGFLPAKS-QQRREHLETLQTESRTIIFYESPHRLRDTLQDL--AEIWGSDRQIVLARELTKLYEEFWRGSLEEAIAHYQQKE---------PQGEYTLVVAGNPPSQTLLTETQLKAELEQLIR-----QGISRSQASRQ----LTKYTSLNRSQVYQIALGINIK 283
[Close]
BLAST of NO07G02960 vs. NCBI_GenBank
Match: WP_104545853.1 (16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Chroococcidiopsis sp. TS-821] >PPS45673.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Chroococcidiopsis sp. TS-821])

HSP 1 Score: 213.0 bits (541), Expect = 1.700e-51
Identity = 128/294 (43.54%), Postives = 184/294 (62.59%), Query Frame = 0 
Query:   93 GTIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACXXXXXXXVSGFASTEFVFIGFLPAKSGKSXXXKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQEGSDSPSTASPRGEFTLVLGPLPRMARGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEI 387
            G +Y V TP+GNL DIT RA+ +L+ VD IA+EDTR TG LL+   + K PQ+S+H+HN  SR+PEL++K   E  +IA+V+DAG PGISDPG EL  AC AA +PV+P+PGA         +G  +  FVF GFLP K GK    +   + T+ R  V YESP+R+ +TL +   A+  G +R ++ ARELTKLHEE +RG ++EA+ H+  +E         P+GE+TLV+  +  +A         ++  LQ  L  + +S S+A+++    L KE  L+RS +Y+IAL +
Sbjct:    7 GRLYVVGTPIGNLEDITFRAVRILQSVDFIAAEDTRHTGKLLQHFQI-KTPQLSYHEHNRNSRIPELIQKLS-EGKAIALVTDAGMPGISDPGYELVQACIAANIPVIPIPGASAVITALCAAGLPTDRFVFEGFLPVK-GKERQQRGESLKTESRTMVFYESPHRLRQTLQDF--ANFFGQDRQIVIARELTKLHEEFWRGNIAEAIAHYNQRE---------PQGEYTLVVAGV--LASKPHLSEVEIKAELQK-LMAQGISRSQASRQ----LAKEVSLSRSQIYQIALAL 279
[Close]
BLAST of NO07G02960 vs. NCBI_GenBank
Match: WP_066383015.1 (16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Anabaena sp. CA = ATCC 33047])

HSP 1 Score: 212.6 bits (540), Expect = 2.200e-51
Identity = 130/301 (43.19%), Postives = 189/301 (62.79%), Query Frame = 0 
Query:   92 PGTIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACXXXXXXXVSGFASTEFVFIGFLPAKSGKSXXXKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQEGSDSPSTASPRGEFTLVLG------PLPRMARGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEI 387
            PGT+Y V TP+GNL DITLRA+ +L+GVD+IA+EDTR TG LL+ L + K PQ+S+H+HN  SR+PE++   Q    ++A+VSDAG PGISDPG EL  AC  A +PVVP+PGA         +G  + +FVF GFLPAKS +     +  + T+ R  +LYESP+R+  TL ++  A+  G +R ++ ARELTKL+EE +RG++ +A+ H+  +E         P+GE+TLV+       PL   A+ + E+  L+R         + +S S+A+++    L +   L R  VY+IAL I
Sbjct:    7 PGTLYIVGTPIGNLEDITLRAVRILQGVDLIAAEDTRHTGKLLQHLQV-KTPQISYHEHNSSSRIPEILEHLQT-GKALALVSDAGMPGISDPGYELVKACVEAQIPVVPIPGASAVITALSAAGLPTDKFVFEGFLPAKS-QQRREHLEALQTESRTIILYESPHRLRDTLQDL--AEIWGSDRQIVLARELTKLYEEFWRGSIGDAIAHYQQRE---------PQGEYTLVVAGNPPSQPLLTEAQLRAELEQLMR---------QGVSRSQASRQ----LNQYTALNRRQVYQIALSI 280
[Close]
BLAST of NO07G02960 vs. NCBI_GenBank
Match: WP_094348343.1 (16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Nostoc sp. 'Peltigera membranacea cyanobiont' 210A] >OYD96535.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Nostoc sp. 'Peltigera membranacea cyanobiont' 210A])

HSP 1 Score: 212.6 bits (540), Expect = 2.200e-51
Identity = 126/297 (42.42%), Postives = 189/297 (63.64%), Query Frame = 0 
Query:   92 PGTIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACXXXXXXXVSGFASTEFVFIGFLPAKSGKSXXXKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQEGSDSPSTASPRGEFTLVLGPLP--RMARGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEI 387
            PGT+Y V TP+GNL DIT RA+ +L+ VD+IA+EDTR TG LL+   + K PQ+S+H+HN  SR+PEL+    V N +IA+VSDAG PGISDPG EL  AC  AG+PVVP+PGA         +G  +  FVF GFLPAK+ +     +  + T+ R  + YESP+R+  TL ++  A+  G +R ++  RELTKL+EE +RGT++EA+ ++  +E         P+GE+TLV+  +P  +    +EE+ A +++++      + +S S+A+++    L K   L R  +Y++AL I
Sbjct:    7 PGTLYVVGTPIGNLEDITFRAVRILQTVDIIAAEDTRHTGKLLQHFQV-KTPQVSYHEHNRTSRIPELLEHL-VNNKAIALVSDAGMPGISDPGYELVKACIEAGIPVVPIPGASAAITALSAAGLPTDRFVFEGFLPAKT-QQRQEHLESLQTESRTLIFYESPHRLRDTLQDL--AEVWGSDRQIVLGRELTKLYEEFWRGTIAEAIAYYTQRE---------PQGEYTLVVAGIPASQPQLTEEELKAELKQLI-----SQGISRSQASRQ----LAKFTSLPRRQLYQLALSI 280
[Close]
BLAST of NO07G02960 vs. NCBI_GenBank
Match: KOO28458.1 (ribosomal RNA small subunit methyltransferase i [Chrysochromulina sp. CCMP291])

HSP 1 Score: 212.2 bits (539), Expect = 2.800e-51
Identity = 133/295 (45.08%), Postives = 176/295 (59.66%), Query Frame = 0 
Query:   94 TIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACXXXXXXXVSGFASTEFVFIGFLPAKSGKSXXXKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQEGSDSPSTASPRGEFTLVLGPLPRMA-RGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEIK 388
            T+Y+VATP+GNL DITLRA+  LR VDV+A+EDTR T  LL+ L +  K  ++HH HN+ S VP+L+   +    S+AVVSDAGTPGISDPG  LAA C    +P+VPVPGAC       VSGF STEF+F GFLP +SG     ++AE+  + R  VLYE+P+R+L TL +++ A    G R V+ ARE+TKLHEE  RGT++ A   +      D       RGEF +V+ PL       +E   A V E          L+A  A  +V K    E G+ ++ +Y  AL  K
Sbjct:   30 TLYYVATPIGNLEDITLRAVRTLREVDVVATEDTRVTLGLLRHLHIGPKKLVAHHDHNLASSVPKLIELLE-GGASVAVVSDAGTPGISDPGLALAAECARRSIPIVPVPGACAAVAAISVSGFVSTEFIFGGFLP-RSGSGRKARIAEMVGERRAVVLYEAPHRMLDTLGDLKMAG--AGGRGVVVAREMTKLHEEFHRGTIASAHAWYAAIAERD----GKLRGEFAVVIAPLDAATLEQREGEAAAVAEERATEAVRARLAAGGALSRVVKEAALEFGVPKAKLYAEALRQK 316
[Close]
BLAST of NO07G02960 vs. NCBI_GenBank
Match: WP_015186795.1 (16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Gloeocapsa sp. PCC 7428] >AFZ28918.1 protein of unknown function UPF0011 [Gloeocapsa sp. PCC 7428])

HSP 1 Score: 211.8 bits (538), Expect = 3.700e-51
Identity = 128/294 (43.54%), Postives = 187/294 (63.61%), Query Frame = 0 
Query:   93 GTIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACXXXXXXXVSGFASTEFVFIGFLPAKSGKSXXXKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQEGSDSPSTASPRGEFTLVLGPLPRMARGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEI 387
            G +Y V TP+GNL DIT RA+ +L+ VD+IA+EDTR TG LL+   +   PQ+S+H+HN  SRVPELV+K   E  +IA+V+DAG PGISDPG EL  AC AA + +VP+PGA         +G  +  FVF GFLPAK GK    + A + T+ R  + YESP+R+ +TL +   A+  G +R ++ ARELTKL+EE +RG++++A+ H+  +E         P+GE+TLV+  +P       E  A ++  LQ  +  + +S S+A+++    L KE  L+RS +Y+IAL +
Sbjct:    7 GILYVVGTPIGNLEDITFRAVRILQSVDLIAAEDTRHTGKLLQHFQIA-TPQLSYHEHNRHSRVPELVQKLS-EGKAIALVTDAGMPGISDPGYELVKACIAANISIVPIPGASAVITALCAAGLPTDRFVFEGFLPAK-GKERQQRQAALETESRTMIFYESPHRLRQTLQDF--ANCFGQDRQIVLARELTKLYEEFWRGSIADAIAHYNQRE---------PQGEYTLVVAGVPPSKLHLTE--AEIKAELQKIM-AQGISRSQASRQ----LAKEISLSRSQIYQIALAL 279
[Close]
BLAST of NO07G02960 vs. NCBI_GenBank
Match: WP_066426766.1 (16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Anabaena sp. 4-3])

HSP 1 Score: 211.8 bits (538), Expect = 3.700e-51
Identity = 130/301 (43.19%), Postives = 189/301 (62.79%), Query Frame = 0 
Query:   92 PGTIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACXXXXXXXVSGFASTEFVFIGFLPAKSGKSXXXKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQEGSDSPSTASPRGEFTLVLG------PLPRMARGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEI 387
            PGT+Y V TP+GNL DITLRA+ +L+GVD+IA+EDTR TG LL+ L + K PQ+S+H+HN  SR+PE++   Q    ++A+VSDAG PGISDPG EL  AC  A +PVVP+PGA         +G  + +FVF GFLPAKS +     +  + T+ R  +LYESP+R+  TL ++  A+  G +R ++ ARELTKL+EE +RG++ +A+ H+  +E         P+GE+TLV+       PL   A+ + E+  L+R         + +S S+A+++    L +   L R  VY+IAL I
Sbjct:    7 PGTLYIVGTPIGNLEDITLRAVRILQGVDLIAAEDTRHTGKLLQHLQV-KTPQISYHEHNSSSRIPEILEHLQT-GKALALVSDAGMPGISDPGYELVKACVEAQIPVVPIPGASAVITALSAAGLPTDKFVFEGFLPAKS-QQRREHLEALQTEYRTIILYESPHRLRDTLQDL--AEMWGSDRQIVLARELTKLYEEFWRGSIGDAIAHYQQRE---------PQGEYTLVVAGNPPSQPLLTEAQLRAELEQLMR---------QGVSRSQASRQ----LNQYTALNRRQVYQIALSI 280
[Close]
BLAST of NO07G02960 vs. NCBI_GenBank
Match: WP_099067744.1 (16S rRNA (cytidine(1402)-2'-O)-methyltransferase [Nostoc linckia] >PHJ64566.1 16S rRNA methyltransferase [Nostoc linckia z1] >PHJ69917.1 16S rRNA methyltransferase [Nostoc linckia z3] >PHJ72992.1 16S rRNA methyltransferase [Nostoc linckia z2] >PHJ80629.1 16S rRNA methyltransferase [Nostoc linckia z4] >PHJ90413.1 16S rRNA methyltransferase [Nostoc linckia z6] >PHJ98198.1 16S rRNA methyltransferase [Nostoc linckia z7] >PHK04069.1 16S rRNA methyltransferase [Nostoc linckia z8] >PHK09694.1 16S rRNA methyltransferase [Nostoc linckia z9] >PHK20362.1 16S rRNA methyltransferase [Nostoc linckia z14] >PHK25758.1 16S rRNA methyltransferase [Nostoc linckia z13] >PHK35831.1 16S rRNA methyltransferase [Nostoc linckia z18] >PHK45565.1 16S rRNA methyltransferase [Nostoc linckia z16])

HSP 1 Score: 211.1 bits (536), Expect = 6.300e-51
Identity = 125/297 (42.09%), Postives = 190/297 (63.97%), Query Frame = 0 
Query:   92 PGTIYFVATPVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQHNVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVVPVPGACXXXXXXXVSGFASTEFVFIGFLPAKSGKSXXXKVAEVATQDRPCVLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAVLHFGGQEGSDSPSTASPRGEFTLVLGPLP--RMARGKEEMGALVREMLQVCLDEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEI 387
            P T+Y V TP+GNL D+T RA+ +L+ VD+IA+EDTR TG LL+   + K PQ+S+H+HN  SR+PEL++     + +IA+VSDAG PGISDPG EL  AC AAG+ VVP+PGA         +G  +  FVF GFLPAKS +     +  + T+ R  + YESP+R+  TL ++  A+  G +R ++ ARELTKL+EE +RGT++EA+ H+  +E         P+GE+TLV+  +P  +    +EE+ A +++++      + +S S+A+++    L KE  L R  +Y++AL +
Sbjct:    7 PRTLYVVGTPIGNLEDMTFRAVRILQTVDMIAAEDTRHTGKLLQHFEI-KTPQISYHEHNRTSRIPELLQYL-TNDKAIALVSDAGMPGISDPGYELIEACIAAGISVVPIPGASAAITALSAAGLPTDRFVFEGFLPAKS-QQRREHLESLQTESRTLIFYESPHRLQDTLQDL--AEILGSDRQIVLARELTKLYEEFWRGTIAEAIAHYSQRE---------PQGEYTLVVAGIPPSQPQLTQEELKAELKQLI-----SQGISRSQASRQ----LAKETSLPRRQLYQLALSL 280
The following BLAST results are available for this feature:
BLAST of NO07G02960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_024544737.11.300e-5142.71MULTISPECIES: 16S rRNA (cytidine(1402)-2'-O)-methy... [more]
WP_099104366.11.300e-5143.1016S rRNA (cytidine(1402)-2'-O)-methyltransferase [... [more]
WP_103137444.11.300e-5144.0016S rRNA (cytidine(1402)-2'-O)-methyltransferase [... [more]
WP_104545853.11.700e-5143.5416S rRNA (cytidine(1402)-2'-O)-methyltransferase [... [more]
WP_066383015.12.200e-5143.1916S rRNA (cytidine(1402)-2'-O)-methyltransferase [... [more]
WP_094348343.12.200e-5142.4216S rRNA (cytidine(1402)-2'-O)-methyltransferase [... [more]
KOO28458.12.800e-5145.08ribosomal RNA small subunit methyltransferase i [C... [more]
WP_015186795.13.700e-5143.5416S rRNA (cytidine(1402)-2'-O)-methyltransferase [... [more]
WP_066426766.13.700e-5143.1916S rRNA (cytidine(1402)-2'-O)-methyltransferase [... [more]
WP_099067744.16.300e-5142.0916S rRNA (cytidine(1402)-2'-O)-methyltransferase [... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000565NSK000565Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02960.1NO07G02960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525389gene_2627Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100194g14gene3470Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02960.1NO07G02960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02960 ID=NO07G02960|Name=NO07G02960|organism=Nannochloropsis oceanica|type=gene|length=1170bp
ATGAGAATACGACCGACCGTCCACTTCGTGCCCATCCTCCTTCACCTTGC
CTGCTTTAGCACGACGGCGCACCGCCAGCTTGTTCATACTGGTGTGGGCT
CTGCCGCCTCCGCCCGCGGTCTGGGCTGCTTCCTTGCACCTCGCCTTCTG
CAATGTTTGCCACTGCTTTCCTCTAACTCGAGAATATGCCACAGCAGTAC
CCGCAGTGGCGCGGGCAACAGCATCAGCCCTAGCGATGAAGGGATACCCG
GGCGAGTTCCCAACAAAATAATTCCCGGTACTATCTACTTTGTCGCCACT
CCTGTGGGCAATCTTGGCGACATCACCCTCCGGGCCCTCGACGTGCTGCG
CGGCGTCGATGTGATCGCCTCAGAAGACACGCGAACAACGGGCTTGCTTC
TCAAGGCTCTTGGATTGACCAAAAAGCCACAAATGAGCCATCATCAACAC
AACGTGCAAAGTCGAGTGCCCGAACTGGTGCGGAAGGCCCAAGTCGAAAA
CCTATCCATTGCCGTGGTCTCAGACGCAGGCACACCTGGTATCTCCGACC
CTGGCAACGAGCTTGCCGCTGCATGTTGGGCCGCAGGGGTCCCTGTCGTG
CCTGTTCCAGGCGCATGCGCGGCAGTTGCCGCTGTGAGCGTCTCTGGATT
TGCATCGACGGAGTTCGTGTTTATTGGCTTCCTCCCTGCGAAGAGTGGAA
AGTCCCGCAAGGCCAAAGTAGCCGAGGTGGCGACCCAAGACCGACCGTGT
GTGCTGTATGAGTCGCCTAACCGCGTGTTGCGCACGTTGATGGAAATTCG
GGAGGCGGATGAGACGGGCGGCGAACGGATGGTGATGTGTGCGCGGGAGC
TGACAAAGTTGCACGAAGAATTGTTTCGAGGTACCTTGAGTGAGGCTGTG
CTTCACTTTGGCGGTCAAGAGGGCAGCGATTCACCCTCAACAGCATCACC
GAGAGGAGAATTTACGTTGGTCTTGGGGCCATTGCCTCGGATGGCGCGGG
GGAAGGAGGAAATGGGTGCCTTGGTGCGAGAAATGCTGCAGGTGTGTCTG
GACGAGGAAGAATTGTCTGCTTCCGAGGCGGCCAAAAAGGTCAGTAAGTG
TCTTGGAAAAGAGGCAGGGCTTGCCAGGTCGGATGTGTACAAAATAGCTC
TTGAAATAAAAGGTAAATAA
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protein sequence of NO07G02960.1

>NO07G02960.1-protein ID=NO07G02960.1-protein|Name=NO07G02960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MRIRPTVHFVPILLHLACFSTTAHRQLVHTGVGSAASARGLGCFLAPRLL
QCLPLLSSNSRICHSSTRSGAGNSISPSDEGIPGRVPNKIIPGTIYFVAT
PVGNLGDITLRALDVLRGVDVIASEDTRTTGLLLKALGLTKKPQMSHHQH
NVQSRVPELVRKAQVENLSIAVVSDAGTPGISDPGNELAAACWAAGVPVV
PVPGACAAVAAVSVSGFASTEFVFIGFLPAKSGKSRKAKVAEVATQDRPC
VLYESPNRVLRTLMEIREADETGGERMVMCARELTKLHEELFRGTLSEAV
LHFGGQEGSDSPSTASPRGEFTLVLGPLPRMARGKEEMGALVREMLQVCL
DEEELSASEAAKKVSKCLGKEAGLARSDVYKIALEIKGK*
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Synonyms
Publications