NO07G02940, NO07G02940 (gene) Nannochloropsis oceanica

Overview
NameNO07G02940
Unique NameNO07G02940
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2353
Alignment locationchr7:827244..829596 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:827244..829596 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G02940 vs. NCBI_GenBank
Match: EWM27123.1 (hypothetical protein Naga_100046g16 [Nannochloropsis gaditana])

HSP 1 Score: 110.2 bits (274), Expect = 1.500e-20
Identity = 93/310 (30.00%), Postives = 134/310 (43.23%), Query Frame = 0 
Query:   13 EPWKGH-TSMSPAQQLHHHRVLTCLLFDPALERREREVATDKAVTVTAQQARRDRLLLVEALKEQHKQQLAEEVAMMNKRVEETQAWVRREIENLRPVALAVVVKEYEKAMEYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEME-YESGMYVGDRQEEMHVNLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGIEGXXXXXXXXXXXVEEGEGFDRDGMAQEVMSSLNQVLLQKQLTAALAASTREYERERQHALNE 321
            E W+ H  S+SPA++ +H+ VL+ LLFDP +E  E E+    A+   A+QARRDRLLL +ALK++H+Q+L EE+A++ KRVEE Q WV+ EI +L+PVAL  VV EYE AME+                               ++M+ Y+S     + + +   + L                                                                           RGG                   G + +G+ QEV+ SLNQ +LQKQL+ ALAA+ +E E+ER  ALN+
Sbjct:    7 EAWENHFDSLSPARKRYHYTVLSALLFDPEVELCELEMIKADAMKAVARQARRDRLLLNDALKKEHEQELTEEIAVIEKRVEEMQVWVQNEIASLKPVALQKVVSEYEHAMEHFYLHGDTNTKGRKHSFLLFDNEAEEFEEIGSEKMDTYDS----EENELDGRDSALAGVDVSERETDMTDYTLSSLNPLSTKRLASPMTTSESNGDFLPPLRKKNTRSSTLGNLKQRVVEDLVDVMVGAPDRGGRRSRL--------------GLEPEGLVQEVIGSLNQAMLQKQLSTALAAAKQECEQERHRALND 298
The following BLAST results are available for this feature:
BLAST of NO07G02940 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27123.11.500e-2030.00hypothetical protein Naga_100046g16 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000596NSK000596Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02940.1NO07G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100046g16gene3439Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02940.1NO07G02940.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02940 ID=NO07G02940|Name=NO07G02940|organism=Nannochloropsis oceanica|type=gene|length=2353bp
CCTTTCCCTGCTCACCTTGCGAAGCTGTGTCATAGACACGAGCAAGCCAA
ATTACTTGGAGCAAAATCTAGTCAATCCTCCCTTTTCCCCTATCCTGTCT
TCCCTTGCTTGCTCCTCTTGCTCTTGCTCTTCCTTGAGTCCTTCCTCTCC
AATCCTCCTCCCTCCCTCCCTCCTCATCACTCCTGTAGCACTGCAGCCCA
AGCATGAAGACTTTCGAGACCACCTCTACCCCAGCGATGGAGCCCTGGAA
AGGTCACACCTCCATGTCCCCCGCTCAGCAGCTTCATCATCACCGTGTTC
TGACGTGCCTCCTTTTCGACCCTGCCTTGGAGCGCCGGGAGCGTGAAGTG
GCCACCGACAAGGCCGTCACCGTCACCGCTCAACAAGCCCGCCGGGACCG
CTTGCTCCTGGTCGAGGCTTTGAAGGAACAGCATAAACAGCAGCTGGCCG
AGGAGGTTGCAATGATGAACAAAAGAGTGGAAGAGACGCAGgtacttttt
gttgctccttccttgtctattctctccttttcccctcaacctgcgatcat
cccatccacccacactagtgatccaccgtcagtgcttacaaccatattta
gccccaaaatgttagcacatttccttgccctcattgcaatcctctctcac
atttgctctctcccctccctctccagGCCTGGGTGCGACGGGAGATAGAA
AACCTGCGGCCGGTGGCGCTGGCGGTAGTGGTCAAAGAGTACGAGAAAGC
CATGGAATATGTGCAACAGCAGCAGCAGAACGGCAGAGGAGGAGGGGAGA
GAGAAGGAGGAAGGAGAGGAGGGCGTTTCCGTCTTGAGGAGGAGGAGGAC
GGCGACGAAATGGAATATGAGAGTGGAATGTATGTAGGTGATAGACAGGA
GGAGATGCATGTAAATCTCCTCGGAGGAGCAGGAGGAGTAGGAGGAGGGA
TGGAGGGAGGCCTCTCTCCCCCCTCTCCCCTCTTGACGAAGAAACGTGCA
AGTCCTATGACAAATTCCGGCGGGGAGCAGCCACAAAGGAGTAAGAAGAA
GAGAAAGGGACAGAAGCAGCAGCAGCAGCAGCAGCAGCAGTTGATGGGTC
GTGGTCGTCGTTCGATGGAGGAAGAGTTGATAGCCATGATGATGGACAGG
GGAGGAATAGAAGGAAAAGGAGGAGAAGGAGGAGGAGGAAGAGGGAGGGT
TGAGGAAGGAGAAGGATTCGACCGTGATGGGATGGCACAGGAGGTTATGA
GCTCATTGAATCAAGTCTTGCTTCAGAAACAGCTCACCGCCGCATTGGCG
GCATCCACGCGGGAGTACGAGCGAGAAAGGCAACATGCCTTGAATGAGGA
GATAGAGAAAAGGGTGAAGCAGGCCGTTGGTCAGATCGAGAGGGAAATGA
AGAGTGAGTTTGAGTGTATCCTTGAGGAAGAGAAGGAGAAGGTGAGGATT
CTGACGGAGGTGGCAGCCGATCAAGCGCGGAAGGAGATGGAAGAGAATCT
CCGGGAGGAGCATAAGGAGGAGATTCAGGCATTGATGCAGAAGGTGGGGC
TGGCCTAAGGAGGGGAGGAGAGAAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAAGGAGTGACAGATACAGATGTGAGGGAGTGCATAGTGGTATCAGTATG
AGAAGCATTAGCAGCCAGGGCAGGGGGAGGGAGGGAGGGAGGGGAGAAGG
GAGGGAAGCGCTCGGTGAGTGAGGACCACCAAGAGACTCTGCCGTTTCCA
AGGGGTGTGTAAAATAAATTGTCAAGGGACTCTCAGTGGGGTCGGAGGTG
CGAACATGCAGGAACCAAGACGGATGGATCTTGAACCAGTCAGGTACACG
CTGTTCTCTGCCATGTGGTGCTATGCTGTGTAATGAAAGCCGTTGTTGCC
AATGTGTATGTGTCAAGGGCGGAAATGGATGGAGTGTAGCAGAGACATGG
GGATTGTCCTTCGAACACAAGTTTCAAATGATTGGAGGGATGTAAACATA
TATATGCATATATATATACATGTGTGTGTGTGTGTGTGTGAAAAAGAGTT
TTCGTGCTTGCGTGGATAGGGAAGAGGAAAACAAACACGAGGGAGTGGAG
GGGGTCTATCGCAACTCCAATGGAAAAAAAAGCCACGGCCCACGAGCCAG
CTGATTGGTGGCCTGGACAATGACAGCAAAAAGTGACCGAGCGGACGCCG
ACCCTGACGCGTCTAATCTCCGTAGGAAGGAGCAGCACGGCATTGGAGCA
ACCAACCATACCCCCCGCTTCTCAAAAAAGGACCAAACAAAACGAATGCA
TGTGACTCAAGCTGTGCATGCCGCGACAGCAACCGGACACCATGCACCCA
AGC
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protein sequence of NO07G02940.1

>NO07G02940.1-protein ID=NO07G02940.1-protein|Name=NO07G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=390bp
MKTFETTSTPAMEPWKGHTSMSPAQQLHHHRVLTCLLFDPALERREREVA
TDKAVTVTAQQARRDRLLLVEALKEQHKQQLAEEVAMMNKRVEETQAWVR
REIENLRPVALAVVVKEYEKAMEYVQQQQQNGRGGGEREGGRRGGRFRLE
EEEDGDEMEYESGMYVGDRQEEMHVNLLGGAGGVGGGMEGGLSPPSPLLT
KKRASPMTNSGGEQPQRSKKKRKGQKQQQQQQQQLMGRGRRSMEEELIAM
MMDRGGIEGKGGEGGGGRGRVEEGEGFDRDGMAQEVMSSLNQVLLQKQLT
AALAASTREYERERQHALNEEIEKRVKQAVGQIEREMKSEFECILEEEKE
KVRILTEVAADQARKEMEENLREEHKEEIQALMQKVGLA*
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Synonyms
Publications