NO07G02860, NO07G02860 (gene) Nannochloropsis oceanica

Overview
NameNO07G02860
Unique NameNO07G02860
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4367
Alignment locationchr7:806547..810913 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:806547..810913 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G02860 vs. NCBI_GenBank
Match: EWM27101.1 (hypothetical protein Naga_100046g26 [Nannochloropsis gaditana])

HSP 1 Score: 125.9 bits (315), Expect = 1.300e-25
Identity = 90/132 (68.18%), Postives = 101/132 (76.52%), Query Frame = 0 
Query:    1 MSMEEHT--LSDSG--NSTGSLHDVTDNDASNAXXXXXXXXXXXXXXXQHNSSQNVIPTDSLANGLSVAKGLFTSGWSQAKKGLTQMQESETMAKVREASKPLVGAVVEGGKVVGEKLHQSAEAAKPGLEAV 129
            MSMEEHT   S+SG   S G L DV  +     XXXXXXXXXXXXXXX   SSQNVIP DSLANG SVAKG   SGWSQA+K +  +Q+SE + K+REASKP VGAVVEGGKVVG++LH +AEAAKPGLEAV
Sbjct:    1 MSMEEHTTSFSESGRQGSDGGLTDVLKDXXXXXXXXXXXXXXXXXXXXAQPSSQNVIPADSLANGFSVAKGFLASGWSQARKSIATLQDSEAVHKMREASKPFVGAVVEGGKVVGDRLHHTAEAAKPGLEAV 132
[Close]
BLAST of NO07G02860 vs. NCBI_GenBank
Match: EWM27100.1 (hypothetical protein Naga_100046g26 [Nannochloropsis gaditana])

HSP 1 Score: 124.0 bits (310), Expect = 5.100e-25
Identity = 91/132 (68.94%), Postives = 101/132 (76.52%), Query Frame = 0 
Query:    1 MSMEEHT--LSDSG--NSTGSLHDVTDNDASNAXXXXXXXXXXXXXXXQHNSSQNVIPTDSLANGLSVAKGLFTSGWSQAKKGLTQMQESETMAKVREASKPLVGAVVEGGKVVGEKLHQSAEAAKPGLEAV 129
            MSMEEHT   S+SG   S G L DV   D    XXXXXXXXXXXXXXX   SSQNVIP DSLANG SVAKG   SGWSQA+K +  +Q+SE + K+REASKP VGAVVEGGKVVG++LH +AEAAKPGLEAV
Sbjct:    1 MSMEEHTTSFSESGRQGSDGGLTDVL-KDXXXXXXXXXXXXXXXXXXXXXPSSQNVIPADSLANGFSVAKGFLASGWSQARKSIATLQDSEAVHKMREASKPFVGAVVEGGKVVGDRLHHTAEAAKPGLEAV 131
The following BLAST results are available for this feature:
BLAST of NO07G02860 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM27101.11.300e-2568.18hypothetical protein Naga_100046g26 [Nannochlorops... [more]
EWM27100.15.100e-2568.94hypothetical protein Naga_100046g26 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000588NSK000588Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02860.1NO07G02860.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100046g26gene3447Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02860.1NO07G02860.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02860 ID=NO07G02860|Name=NO07G02860|organism=Nannochloropsis oceanica|type=gene|length=4367bp
TGAGCAAGAAGTTCTTCAAGGGCGAGAGATCCGTGTCACGTAAGTTGTTG
AGTGTTGAATGTATCCCCTTTTCCCCCTTCCTTTCTGATTGGTTCTTTCG
TAAATATCTTGTATAGCGTGCTCATTTACTCGACCTTTTTCCGTAAAAAG
GCTGTTGTGTGTATTTAATACGGCCGGTCGCGCCTGTCGCCCCTACGTCC
GCCCCTATCATCGTACCTTCCGTAACCTCCTCCGTACCCTCCTCCCCCTC
CCCTTCCTCCTCCGCCACCCCTATATCCTCCACCTCCTCCTCGGTCGTCC
CTTCCATAGCCACCTCCTCCCCCTCCTCGCCCTCCTCCATACCCACCCCC
TCCGCCCCTCCCTCCTCCGTATCCCCCTCCTCCACCACCGTAACCCCCCC
TCCTCCGGAGTACCCTCCTCCACTTCCTCCCTCCTCATCCTCCCCGTATG
ACACCATACTCACCTTCAACGTCTTCCCAGCCAGTTCCGTGCCGTGGAAA
AATGAGATCGAAGCATGGGCAGAATTAGGCTCTTCGTACGTGAGCACGCA
TTCGCCTTTGCTTTTACCCGATTCGTCGCGGTACATTTTGATTTTGTAAG
GCCATTGGTCCGGGTAGCTAAGAAAATAAGGAGGGAGGGAGGGAGGGTGG
GAGGGAGAGAGGGGTGACTGAGAATGGAAGAGAAGGTGGAATTTGCATCT
TCGTGGGTCACGTCAAATCGTTTTGGGCCTTCGCATGGCCCGCCCCGGTA
CAGATTGTTTTTGTCGAACATCTGGATCAAGAAGTAGGGAGAAGGGAGGG
AGAAAAAAAGGGAAGGAGGAAAGGATGGGGAGGTGGTACATCTCTTCACC
CAAAGCAACGCACGCGCTCAATATCATTTTCTCTTACCCTCGCTTTTGCT
TCATCTTCTTGACAATACCAATCTGGCCGAAGTATTCCGCAATCTCGGCT
TCAGTTGTTGAGGGACTGAGCCCAGAGATAAAGATAGTGCCGTTAACACG
CAATTTGTCCAACTGGCAAGGGGGGGAGGGAGGGAGGGTGAAGGGAAAAA
TTGAGTAAGGAATGCTAATGTTGTTTATGATGCAGCTGTAGAGGATAGTG
CCCTAAATCTGATAAATCGCTCTGGTTGATACACCGGTTATCCGAATGCA
TAAAAAGGGAGGGAGGACGGCAAGGTTGAGGAAAATTCAAGGGGAAAGAC
TCTCCATAAAAAGAAACCTATGTGCTCCAACTAAACAAGCGGCCCTGGAA
TGAGGAAATTAATCCCAGGGTGCTTATGCGAGTTCGACCGAGTCGTGCCT
CCCTTTCTTCCTTCGAAGAAGAAAAGAGGGGGAAGACGCATCTTGTTCTC
CTCCGGAGTAAACAACTTCGCCCGCACTCATCTCAGCCCACCCTTGCGAG
GGTGGGGGCATGGGAAGCTAACTAGCCGGAGTATGTTCACGTGTGTTTTC
AGTTTATGAAACTGGGTAAATTAAAAAGAAATGACACATCAGTATGTGGG
ACGGGGAAGGACGGAGGGGGGGAGGGAAGAACTGCTCATTATGCTTACCT
AACCCACGGAGTCTTGGCCGCAGTCTCCATCTCCTTCGACAAAACATTAT
CTATCACGCAGCCCAACAAAGCCGTCCATGGCGAACGCGCTTCTTTCCCC
TTTATTCCACTCATCACTTTTATCATCTTTTCATCCCTTTACCCCTTCCG
CCTCACTCACCACGCGACCCAGCTTGTCCCGAATTTCCCGGGAAATATCA
TATTTGCTCAAGTCTTGATAATCCAGCCCCGCCAAATCTGCCACGGTCTC
CACCCCACCCGCCACCAATGTCTGTGCGGATAAGAATGGAAAGTTAATAT
TCATGATTCGTGCGGCTTGCTAAGACTCCCGAGACCCAGCTTGTTCCTTC
GTCATGGCTTACTACCAGCCTCCGCCCTCTCTGCCGCTACACGAGGTGCC
TGACCATCCACTTCTCGCCCCTCTCCACGCCGACCACCGCTCTTTTTACT
CCAGACTCTCTTCTCCTGCATACGACCACCATTCTTTCAACTCCAGCAAT
TCTTCTCCTGCATACCTTCGCAGGCTCCGCGTATGTAGGGCTTAGATGTG
TCAAGAACCGAATAACCTCGCTAGGGTCCTCCGCAGGCTCTGCAGGCGCA
GACGGTTCAGAGGCCGGCGCGGCGTTGCTCTCGCTCATAGTTAATCCAGT
TGCTTTGTCTTCGTGTTGAACAGATTGTCTATTTGGTGTGTGCGCGTGTG
TGAGAAAGGAGGAGATAGGTGGAAGGTTGTTATTGCTCGGTAAGGGAGTT
GTTGTTTTGCGTTGCCAGAAGTCTACACCTCCCCACGAGGCTTATTTCCG
GCGCAGTCAAGCACACGATCAACCGCACCAAACTTCCACTGATCCTTGCA
GGACCTTGTGCGGTAAAGCTTCTTGGTGTGGATTGGCTGCGTCTGTGGTG
GAGAAATTTAGTGTCAACTTAATTATCCAGGATTCAGAAGGAACTTCTTG
AAGAAGCGCTCGCTCGAAGTGATTTTCATTTCTTTATCATTCATGCACTT
CGACACACCCACACCCACTTTCTCGCACCACCGCAGCCACCCACACAAGC
AGCATGTCCATGGAAGAGCACACTCTGTCGGATTCTGGCAACAGCACCGG
CAGCTTGCACGATGTTACGGACAACGATGgtaagttgacgacaacccgct
tggccatgttccgtttagttgcccctgtctgtgcccttaaacagcaagca
ctcaacctctcacgcaccataaccctcgttctttcaaatgacatacagCC
TCTAATGCAAACGCGGCCATGGCAGCGGCGGCTGCCGAGGAGGAGGAGGG
CACAgtgagtcaagggcggaaatgtcgagggtgactggtagtgcaaatgc
ctcgcatgtgttcatgctggtgcaaagatgtttgacagacataggcattt
ggtgatgtagtatgatatcatgctacatgctgcatccacggcgccgaatt
cacagcatggaggacgcatcgtaccatgctaattgttgtaagatgtgcga
aaggccactcagtgatcatttgtgtcagacagattcagttagagtcgaga
aggctgtccgatgacctcgattggaaacaacgagaatgaggaaagcatgg
aatggcagtgccgaataagcaccagtggcagcttaagaaggggaaagcac
acgcctctttttagcgacacgaaagtgctttggaagacagaactgcaagc
ttcgaaggacggagctgtagccgatttttcggtcccctccccccctttta
cattaccctcctttctcccccgtggtaataccccgcgagaaaggccacgg
tctctccgacaaccttccgtcctaacccacctctccccctttctttgcat
ccctccagCAGCACAACAGCAGCCAAAACGTCATTCCCACCGACAGTCTG
GCCAACGGGCTAAGCGTCGCCAAGGGGCTGTTTACCTCCGGGTGGTCGCA
AGCGAAAAAAGGCCTGACGCAGATGCAGGAATCGGAGACGATGGCGAAAG
TCCGTGAGGCCTCCAAGCCGCTGGTGGGTGCAGTCGTGGAGGGTGGAAAG
GTGGTCGGGGAGAAGCTGCACCAGTCGGCAGAAGCGGCCAAACCTGGACT
GGAAGCAGTTGGGAGgtacgtacattttttgtctatcgttgtgtcttgtc
gaacactcaagatagattcgaatctcactctgtcttccttccttttcgcc
cgctatccctcccttcctgcctccatcccttccagGCGCGTATCGGGCGC
GGTGGAGAGTTTAGCCGAGAAGACTAAGCCGGCATTGGAGAAGGCTGGAG
ATGCGATCAAGACAACGACGAAGCATGTGGTGGATGAGGGCAAGCCGATT
GTGAAGAAGgtgagtctagagagagcgagggagggaggacaaggccgggc
tatctgggtcgtggctaacaatacacctccctttatacatgtacagGTGG
GAACATTCATCAATCACAACATGGGCGGCAAGAGCGAGGGCGGTGGTCGT
GGCGATCCGCCCACGACGGTCTAAGCGCAGCAGCAGTGCAGGTCTAAGGC
GGCAGGCTTGTAGAGTGGAGGAAAAGAACAGAGGGAAACAGAGATGATTG
ACGTCACAGAAGGGGAGAAATTTACGTGTCTATCCATAGGATGTGTTATT
TGAGATCAAGTTTTTTTGGTGTGGGAATGTAGGGAAGGTATGGGAGGGGA
GAGAGAGAGGGATTGTCGACGTGGAGACCGCGTCAAATAAAAGCGGGGGC
GAAATCAAAACACACCGTCTTTATTCATATGGAGTGGAAAGGAACATACA
CAGGAAGCGTCTCGTGT
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protein sequence of NO07G02860.1

>NO07G02860.1-protein ID=NO07G02860.1-protein|Name=NO07G02860.1|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MSMEEHTLSDSGNSTGSLHDVTDNDASNANAAMAAAAAEEEEGTQHNSSQ
NVIPTDSLANGLSVAKGLFTSGWSQAKKGLTQMQESETMAKVREASKPLV
GAVVEGGKVVGEKLHQSAEAAKPGLEAVGRRVSGAVESLAEKTKPALEKA
GDAIKTTTKHVVDEGKPIVKKVGTFINHNMGGKSEGGGRGDPPTTV*
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Synonyms
Publications