NO07G02800, NO07G02800 (gene) Nannochloropsis oceanica

Overview
NameNO07G02800
Unique NameNO07G02800
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1150
Alignment locationchr7:797034..798183 +

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Properties
Property NameValue
DescriptionAnkyrin repeat family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:797034..798183 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036770Ankyrin_rpt-contain_sf
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
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BLAST of NO07G02800 vs. NCBI_GenBank
Match: GAX96917.1 (Hypothetical protein PINS_004783 [Pythium insidiosum])

HSP 1 Score: 66.6 bits (161), Expect = 1.300e-7
Identity = 71/251 (28.29%), Postives = 113/251 (45.02%), Query Frame = 0 
Query:   14 NFHQQPSDANIALFEACAIAKDVSHVDKLLASGASP--NWYNYQEGGQTALHAAARVPSSSPSSAHATVIVQRLLAHGAVTNVLTLPDFNLPLHFAASAGNLATVKLLVEHDQKHT-----TPKTLSAAVASP--FASLIKAPTIATCGVRQSNIFGNTPLHEACISGHEEL--ITLLLANGADLRHMDQDGVGILHIAAMQGHREIVDHLLKEKMLGKAGWTKDANGHSPMFYAKMKGFDEIEKMLSEAE 254
            +++++   A + LF+AC   +  +   + LAS A    NW+  Q  G TAL AA        ++ H  V V+ LL  GA    L  PD N PLH AA       +++++   Q+ +     TP   +A   S    A L++A   A       N+ G+ PLH AC      L  +  L+  G+D+ H D  G   L IAA +   +++D L   +  G     ++  G   M +AK++   +   +L  AE
Sbjct:    2 SYNREVKQATLDLFDAC--ERGDAKAAEALASRADVDINWHCRQSYGATALIAAI-------ANGHVGV-VEILLDKGAELGELKTPDRNSPLHEAAIRDXPXIMRMIIHRIQEXSNQFGNTPLHNAARTGSAECVAFLLEAGARADI----KNVNGSLPLHHACYCDKPNLRIVQRLVDAGSDVNHQDDQGYTPLMIAAKKNQTDVIDFL---RSHGADVQMQNQFGEDAMHFAKLRDNRDAMSLLEVAE 235
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BLAST of NO07G02800 vs. NCBI_GenBank
Match: XP_002288888.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED94324.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 63.9 bits (154), Expect = 8.500e-7
Identity = 70/268 (26.12%), Postives = 105/268 (39.18%), Query Frame = 0 
Query:   17 QQPSDANIALFEACAIAKDVSHVDKLLASGASPNWYNYQEGGQT-ALHAAARVPSSSPSSAHATVIVQRLLAHGAVTNVLTLPDFNLPLHFAASAGNLATVKLLVEHDQKHTTPKT------LSAAVASPFASLIKAPTIATCGVRQSNIFGNTPLHEACI---SGHEE-----------LITLLLANGADLRHMDQDGVGILHIAAMQGHREIVDHLLKEKMLGKAGW---TKDANGHSPMFYAKMKGFDEIEKMLSEAERDEVKGE 261
            Q  S  N  L++A A   D+  +   L  GA PN++N  + G    LHAAA+    S     A +  + L+  GA  +   + + N P+H AASAG+    ++L+E   K T  +                               ++N  G+T LH AC    +G E               LL  N  D+   D +G   LHIAA +G  ++V  L+       A     +K   G +P   AK  G +    ++ EA      GE
Sbjct:  410 QWNSSQNTELYDAAANG-DIRRLRNALEKGADPNYFNRNDDGTPGVLHAAAKAELLSNKDNEAALCAKELIGKGARVSAALISNRNAPIHEAASAGSKGVCEVLIEASPKCTKSENSFGNXXXXXXXXXXXXXXXXXXXXKGADSNKTNHRGSTALHIACFLASNGKEGGTMPTDPYLNIAAILLCDNALDVDTKDVNGYTALHIAAQRGCNDMVRLLIDSGASLTAKTYIDSKGRGGRTPAGMAKFGGQETTMSIVEEAVAAIENGE 676
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BLAST of NO07G02800 vs. NCBI_GenBank
Match: XP_015752369.1 (PREDICTED: ankyrin repeat domain-containing protein 39-like [Acropora digitifera])

HSP 1 Score: 63.9 bits (154), Expect = 8.500e-7
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 0 
Query:  154 VRQSNIFGNTPLHEACISGHEELITLLLANGADLRHMDQDGVGILHIAAMQGHREIVDHLLKEKMLGKAGWTKDANGHSPMFYAKMKGFDEIEKMLSEAERDE 257
            V Q N +G T L +ACISG+  L   LL  GADL+ +D DG   LH+A+ +GH E+V  L+    +      +D +G   +  AK    D++  +LS+A   E
Sbjct:   29 VNQPNKYGLTALQQACISGNLSLANFLLERGADLKIVDSDGRSSLHLASERGHLEVVSLLINSTCVDVN--ARDNSGRKAVDVAKN---DQVRALLSQAMLSE 126
The following BLAST results are available for this feature:
BLAST of NO07G02800 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
GAX96917.11.300e-728.29Hypothetical protein PINS_004783 [Pythium insidios... [more]
XP_002288888.18.500e-726.12predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_015752369.18.500e-736.89PREDICTED: ankyrin repeat domain-containing protei... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02800.1NO07G02800.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525422gene_2611Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02800.1NO07G02800.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02800 ID=NO07G02800|Name=NO07G02800|organism=Nannochloropsis oceanica|type=gene|length=1150bp
GCCAAAACACAGGACACAAGCCCACGTCTCCATTACAAAGAGCTACTTTT
ACCACTTCAGACTTTGTTGGTCTTGATGAATCATCCTATTTCCACCATCA
GACTTTCCAAATGGCCATGTCGTCCCCGCCGCCGCTGCCCCACAATTCCA
ATTTTCACCAACAGCCCAGCGACGCCAACATTGCCCTTTTCGAGGCATGT
GCCATAGCCAAGGATGTAAGCCATGTCGACAAGCTGCTCGCCTCTGGTGC
CAGCCCTAATTGGTATAATTATCAGGAGGGAGGGCAGACGGCGTTGCATG
CCGCTGCGCGTGTTCCCTCGTCCTCCCCCTCTTCTGCCCATGCCACCGTG
ATTGTGCAGCGCCTACTTGCACACGGTGCCGTGACCAACGTCCTGACCCT
GCCAGATTTTAACTTGCCCTTGCACTTTGCCGCCTCGGCGGGGAACCTGG
CGACGGTAAAGCTGCTTGTTGAGCACGACCAGAAGCACACAACTCCCAAA
ACCCTTTCCGCGGCCGTTGCTTCACCATTCGCCTCTCTTATAAAGGCCCC
CACCATTGCCACATGTGGCGTCCGCCAGAGCAATATATTCGGTAATACAC
CCCTTCATGAGGCGTGCATTTCGGGGCACGAAGAGgtaggatcgctggga
aaggaggtcacatataaatgatattaatcatctcttccacatcaccgcac
tcacattgcttttcttctttcattttcttctcattcacatgtggtccaaa
gtgcgcaaattacatcctatcccaagatagggccaccgcccggccctccc
tcgtcaacctttccaacaaacgcggctccactccactcctcttctcgctt
tatggctcccatccctccctcaagCTGATTACCCTCCTCCTTGCCAACGG
AGCAGACCTCCGTCACATGGATCAAGATGGAGTAGGTATCTTGCATATTG
CTGCAATGCAAGGCCATCGGGAGATAGTTGATCACCTTTTGAAAGAGAAA
ATGTTGGGGAAAGCAGGTTGGACGAAAGATGCGAATGGACATTCGCCCAT
GTTTTATGCCAAAATGAAGGGCTTTGATGAGATTGAAAAGATGTTGTCGG
AGGCTGAGAGAGATGAAGTGAAGGGGGAGAGGGAAAATGTCGGTGCTTGA
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protein sequence of NO07G02800.1

>NO07G02800.1-protein ID=NO07G02800.1-protein|Name=NO07G02800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=267bp
MAMSSPPPLPHNSNFHQQPSDANIALFEACAIAKDVSHVDKLLASGASPN
WYNYQEGGQTALHAAARVPSSSPSSAHATVIVQRLLAHGAVTNVLTLPDF
NLPLHFAASAGNLATVKLLVEHDQKHTTPKTLSAAVASPFASLIKAPTIA
TCGVRQSNIFGNTPLHEACISGHEELITLLLANGADLRHMDQDGVGILHI
AAMQGHREIVDHLLKEKMLGKAGWTKDANGHSPMFYAKMKGFDEIEKMLS
EAERDEVKGERENVGA*
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Synonyms
Publications