NO07G02790, NO07G02790 (gene) Nannochloropsis oceanica

Overview
NameNO07G02790
Unique NameNO07G02790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length482
Alignment locationchr7:796096..796577 -

Link to JBrowse

Properties
Property NameValue
DescriptionTransmembrane protein 167
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:796096..796577 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009653DUF1242
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO07G02790 vs. NCBI_GenBank
Match: KUF88410.1 (kish-A protein [Phytophthora nicotianae])

HSP 1 Score: 89.7 bits (221), Expect = 4.500e-15
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAI-NRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            MSA+F    L+TVILLFI TCTY++    T+FD      G +  +HEGL G CWKASRIGERKS++V  A V+MAVHTLFF
Sbjct:    1 MSALFSLHGLLTVILLFICTCTYIKMKFPTLFDR-----GQLPGKHEGLGGLCWKASRIGERKSQYVAGALVVMAVHTLFF 76          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: XP_009034822.1 (hypothetical protein AURANDRAFT_23438 [Aureococcus anophagefferens] >EGB09972.1 hypothetical protein AURANDRAFT_23438 [Aureococcus anophagefferens])

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-14
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADG------AINRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            MSAIFDFSSL+TV+LL I TCTY+R  R ++FD   SAD       +  R  G+ G CWKASRIGER S +V +    MA H L F
Sbjct:    1 MSAIFDFSSLVTVLLLIICTCTYVRAMRPSVFDGGLSADDLASPHLSYKRRSGIRGACWKASRIGERLSPYVSVVVAAMAFHILLF 86          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: XP_009539527.1 (hypothetical protein PHYSODRAFT_534932, partial [Phytophthora sojae] >EGZ05018.1 hypothetical protein PHYSODRAFT_534932, partial [Phytophthora sojae])

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-14
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    2 SAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAI-NRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            SA+F    L+TVILLFI TCTY++    T+FD      G +  +HEGL G CWKASRIGERKS++V  A V+MAVHTLFF
Sbjct:    1 SALFSLQGLLTVILLFICTCTYIKMKFPTLFDR-----GQLPGKHEGLGGLCWKASRIGERKSQYVAGALVVMAVHTLFF 75          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: OWZ09068.1 (putative membrane protein, partial [Phytophthora megakarya])

HSP 1 Score: 87.8 bits (216), Expect = 1.700e-14
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 0
Query:    2 SAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAI-NRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            SA+F    L+TVILLFI TCTY++    T+FD      G +  +HEGL G CWKASRIGERKS++V  A V+MA+HTLFF
Sbjct:    1 SALFSLQGLLTVILLFICTCTYIKMKFPTLFDR-----GQLPGKHEGLGGLCWKASRIGERKSQYVAGALVVMAIHTLFF 75          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: OQR89253.1 (hypothetical protein THRCLA_09829, partial [Thraustotheca clavata])

HSP 1 Score: 87.0 bits (214), Expect = 2.900e-14
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 0
Query:    2 SAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAI-NRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            +A+F+F+ ++T++LLFI TCTY+R    TIFD      G +  +HEGL G CWKASRIGERKSEWV      MA+H LFF
Sbjct:  360 TALFNFTGMVTMVLLFICTCTYIRMKFPTIFDR-----GQLPGKHEGLTGLCWKASRIGERKSEWVAGMLFAMALHRLFF 434          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: OQR80825.1 (serine/threonine protein kinase [Achlya hypogyna])

HSP 1 Score: 85.9 bits (211), Expect = 6.600e-14
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0
Query:    2 SAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAI-NRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLF 80
            +A+F+F+ ++T++LLFI TCTY+R    T+FD      G +  +HEGL G CWKASRIGERKSEWV    + MAVH LF
Sbjct:  535 TALFNFTGMLTMVLLFICTCTYIRMKFPTLFDR-----GQLPGKHEGLTGLCWKASRIGERKSEWVAGMLLAMAVHRLF 608          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: XP_008872260.1 (hypothetical protein H310_08335 [Aphanomyces invadans] >ETV98832.1 hypothetical protein H310_08335 [Aphanomyces invadans])

HSP 1 Score: 84.3 bits (207), Expect = 1.900e-13
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAI-NRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            M+A+F+F+ ++T++LL I TCTY+R    TIFD      G +  +HEG  G CWKASRIGERKSE+V    + MAVH LFF
Sbjct:    1 MTALFNFTGMLTMVLLIICTCTYIRLKMPTIFDR-----GQLPGKHEGFTGLCWKASRIGERKSEYVAALLLAMAVHRLFF 76          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: XP_001844384.1 (transmembrane protein 167 [Culex quinquefasciatus] >EDS36881.1 transmembrane protein 167 [Culex quinquefasciatus])

HSP 1 Score: 84.0 bits (206), Expect = 2.500e-13
Identity = 43/80 (53.75%), Postives = 53/80 (66.25%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            MSAIF+F SL++VILL I TC YLR    +I D K +         G+LG  WK +RIGERKS WVG+ACV+MA   LF+
Sbjct:    1 MSAIFNFQSLLSVILLMICTCAYLRSLFPSIIDRKKT---------GMLGIFWKLARIGERKSPWVGLACVLMAASILFY 71          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: XP_018575251.1 (protein kish-A [Anoplophora glabripennis])

HSP 1 Score: 84.0 bits (206), Expect = 2.500e-13
Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFFK 82
            MSAIFDF SL+TV+LL I TC YLRG   +I D             G++G  WK +RIGERKS W+G  C++MA+  LFFK
Sbjct:    1 MSAIFDFQSLLTVVLLLICTCAYLRGLFPSIMD---------RNKVGVMGTFWKCARIGERKSPWIGACCILMALSILFFK 72          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: XP_009836967.1 (hypothetical protein H257_11668 [Aphanomyces astaci] >ETV73541.1 hypothetical protein H257_11668 [Aphanomyces astaci])

HSP 1 Score: 81.6 bits (200), Expect = 1.200e-12
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAI-NRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            M+A+F+F+ ++T++LL I TCTY+R    TIFD      G +  +HEG  G CWKASRIGERKSE+V    + MAVH L F
Sbjct:    1 MTALFNFTGMLTMLLLIICTCTYIRLKMPTIFDR-----GQLPGKHEGFTGLCWKASRIGERKSEYVAALLLAMAVHRLLF 76          
The following BLAST results are available for this feature:
BLAST of NO07G02790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
KUF88410.14.500e-1559.26kish-A protein [Phytophthora nicotianae][more]
XP_009034822.11.300e-1453.49hypothetical protein AURANDRAFT_23438 [Aureococcus... [more]
XP_009539527.11.300e-1458.75hypothetical protein PHYSODRAFT_534932, partial [P... [more]
OWZ09068.11.700e-1457.50putative membrane protein, partial [Phytophthora m... [more]
OQR89253.12.900e-1455.00hypothetical protein THRCLA_09829, partial [Thraus... [more]
OQR80825.16.600e-1454.43serine/threonine protein kinase [Achlya hypogyna][more]
XP_008872260.11.900e-1353.09hypothetical protein H310_08335 [Aphanomyces invad... [more]
XP_001844384.12.500e-1353.75transmembrane protein 167 [Culex quinquefasciatus]... [more]
XP_018575251.12.500e-1351.85protein kish-A [Anoplophora glabripennis][more]
XP_009836967.11.200e-1251.85hypothetical protein H257_11668 [Aphanomyces astac... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02790.1NO07G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580927gene_2610Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100046g31gene3452Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02790.1NO07G02790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02790 ID=NO07G02790|Name=NO07G02790|organism=Nannochloropsis oceanica|type=gene|length=482bp
ATGgtacgtctcgctctttctctgtgggtccagcagtttaggatcgtcgt
tcaccgctggctgcatgtctgctgtagtcgacgtcttgcgcaaaaacaga
ggactgtctctggcgccgacgcccttgccacagacacatgcatccacacc
cagacacatatgtatccctcccacatcctcgtagtccgctatccacactc
tgacacacatgtatccctcccaaatccccctagTCCGCAATCTTCGATTT
CTCTAGCCTCATTACCGTCATTCTTCTCTTCATCGTCACTTGTACCTATC
TTCGTGGGTTTCGCGCCACGATTTTCGACAATAAACCCTCGGCCGACGGG
GCCATTAATCGGCATGAGGGCTTGCTCGGGTTTTGTTGGAAAGCGTCTCG
GATTGGGGAACGGAAGAGTGAGTGGGTAGGTATGGCATGTGTGATCATGG
CAGTGCATACCTTATTTTTCAAAAAGCCTTAA
back to top

protein sequence of NO07G02790.1

>NO07G02790.1-protein ID=NO07G02790.1-protein|Name=NO07G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLG
FCWKASRIGERKSEWVGMACVIMAVHTLFFKKP*
back to top
Synonyms
Publications