NO07G02790, NO07G02790 (gene) Nannochloropsis oceanica

Overview
NameNO07G02790
Unique NameNO07G02790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length482
Alignment locationchr7:796096..796577 -

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Properties
Property NameValue
DescriptionTransmembrane protein 167
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:796096..796577 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009653DUF1242
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of NO07G02790 vs. NCBI_GenBank
Match: EWM27090.1 (transmembrane protein 167 precursor [Nannochloropsis gaditana])

HSP 1 Score: 159.8 bits (403), Expect = 3.600e-36
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFFKK 83
            MSAIFDFSSLITV+LLFIVTCTYLRGFR+TIFDN PSADGAINRHEGLLGFCWKASRIGERKSEWVG+ACV MAVH LFFKK
Sbjct:   76 MSAIFDFSSLITVVLLFIVTCTYLRGFRSTIFDNAPSADGAINRHEGLLGFCWKASRIGERKSEWVGLACVGMAVHVLFFKK 157          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: GAY02769.1 (Hypothetical protein PINS_010610 [Pythium insidiosum])

HSP 1 Score: 96.3 bits (238), Expect = 4.900e-17
Identity = 51/80 (63.75%), Postives = 56/80 (70.00%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            MSA+F    LITVILLFI TCTY+R    TIFD          +HEGL G CWKASRIGERKSE+V +  VIMAVHTLFF
Sbjct:    1 MSALFSLQGLITVILLFICTCTYIRMKFPTIFDRGQQP----GKHEGLSGLCWKASRIGERKSEYVSVVLVIMAVHTLFF 76          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: CCI47621.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 91.7 bits (226), Expect = 1.200e-15
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            MSA+F    LITVILLFI TC+Y+R    T+FD          +HEGL G CWKASRIGERKS +V  A ++MA+HTLFF
Sbjct:    1 MSALFSLPGLITVILLFICTCSYIRAKFPTVFDRNQQP----GKHEGLSGLCWKASRIGERKSPYVAGALIVMAMHTLFF 76          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: CCA21670.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 91.3 bits (225), Expect = 1.600e-15
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            MSA+F    LITVILLFI TC+Y+R    T+FD          +HEGL G CWKASRIGERKS +V  A ++MA+HTLFF
Sbjct:    1 MSALFSLPGLITVILLFICTCSYIRAKFPTVFDRNQQP----GKHEGLSGLCWKASRIGERKSPYVAGALILMALHTLFF 76          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: XP_002997256.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >XP_002896891.1 conserved hypothetical protein [Phytophthora infestans T30-4] >AAN31496.1 unknown [Phytophthora infestans] >EEY66590.1 conserved hypothetical protein [Phytophthora infestans T30-4] >EEY69489.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 90.9 bits (224), Expect = 2.000e-15
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAI-NRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            MSA+F    L+TVILLFI TCTY++    T+FD      G +  +HEGL G CWKASRIGERKS++V  A V+MAVHTLFF
Sbjct:    1 MSALFSLQGLLTVILLFICTCTYIKMKFPTLFDR-----GQLPGKHEGLGGLCWKASRIGERKSQYVASALVVMAVHTLFF 76          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: GAX11542.1 (hypothetical protein FisN_22Lu266 [Fistulifera solaris])

HSP 1 Score: 90.5 bits (223), Expect = 2.700e-15
Identity = 47/82 (57.32%), Postives = 57/82 (69.51%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAIN-RHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFFK 82
            MSAIF+FSSL+TV+LL I TC YLR  R  IFD  P  +G    + EGL GF WK SRIGER S ++G+ C IMA+H LF +
Sbjct:    1 MSAIFNFSSLLTVLLLLICTCAYLRELRPGIFD-PPRKEGETKLKREGLTGFLWKMSRIGERLSPYIGVGCFIMAIHVLFIQ 81          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: POM64247.1 (Hypothetical protein PHPALM_20246 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 90.5 bits (223), Expect = 2.700e-15
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAI-NRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            MSA+F    L+TVILLFI TCTY++    T+FD      G +  +HEGL G CWKASRIGERKS++V  A VIMAVHTLFF
Sbjct:    1 MSALFSLQGLLTVILLFICTCTYIKMKFPTLFDR-----GQLPGKHEGLGGLCWKASRIGERKSQYVAGALVIMAVHTLFF 76          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: XP_008915726.1 (hypothetical protein PPTG_19126 [Phytophthora parasitica INRA-310] >ETI55261.1 hypothetical protein F443_02055 [Phytophthora parasitica P1569] >ETK93165.1 hypothetical protein L915_03609 [Phytophthora parasitica] >ETL46582.1 hypothetical protein L916_03554 [Phytophthora parasitica] >ETL99720.1 hypothetical protein L917_03473 [Phytophthora parasitica] >ETM54764.1 hypothetical protein L914_01952 [Phytophthora parasitica] >ETM98985.1 hypothetical protein PPTG_19126 [Phytophthora parasitica INRA-310] >ETO83995.1 hypothetical protein F444_02066 [Phytophthora parasitica P1976] >ETP25065.1 hypothetical protein F441_02021 [Phytophthora parasitica CJ01A1] >ETP53068.1 hypothetical protein F442_02008 [Phytophthora parasitica P10297])

HSP 1 Score: 90.1 bits (222), Expect = 3.500e-15
Identity = 48/81 (59.26%), Postives = 58/81 (71.60%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAI-NRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            MSA+F    L+TVILLFI TCTY++    T+FD      G +  +HEGL G CWKASRIGERKS++V  A V+MAVHTLFF
Sbjct:    1 MSALFSLQGLLTVILLFICTCTYIKMKFPTLFDR-----GQLPGKHEGLGGLCWKASRIGERKSQYVAGALVVMAVHTLFF 76          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: XP_002180165.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC48356.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 90.1 bits (222), Expect = 3.500e-15
Identity = 48/81 (59.26%), Postives = 53/81 (65.43%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFFK 82
            MSAIFDFSSL+TV+LL I TCTYLR  R  IFD            EG  GF WK SR+GER S +VG  C +MAVH LFFK
Sbjct:    1 MSAIFDFSSLVTVLLLLICTCTYLRELRPGIFD---------AAREGFWGFLWKLSRVGERLSPYVGAGCALMAVHILFFK 72          
BLAST of NO07G02790 vs. NCBI_GenBank
Match: XP_024581380.1 (Uncharacterized conserved protein [Plasmopara halstedii] >CEG45011.1 Uncharacterized conserved protein [Plasmopara halstedii])

HSP 1 Score: 89.7 bits (221), Expect = 4.500e-15
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 0
Query:    1 MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLGFCWKASRIGERKSEWVGMACVIMAVHTLFF 81
            MSA+F+   L+TVILLFI TCTY++    T+FD          +HEGL G CWKASRIGERKS +V  A V+MAVHTLFF
Sbjct:   20 MSALFNLQGLLTVILLFICTCTYIKMKFPTLFDRGQMP----GKHEGLGGLCWKASRIGERKSPYVAGALVLMAVHTLFF 95          
The following BLAST results are available for this feature:
BLAST of NO07G02790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27090.13.600e-3692.68transmembrane protein 167 precursor [Nannochlorops... [more]
GAY02769.14.900e-1763.75Hypothetical protein PINS_010610 [Pythium insidios... [more]
CCI47621.11.200e-1557.50unnamed protein product [Albugo candida][more]
CCA21670.11.600e-1557.50conserved hypothetical protein [Albugo laibachii N... [more]
XP_002997256.12.000e-1559.26conserved hypothetical protein [Phytophthora infes... [more]
GAX11542.12.700e-1557.32hypothetical protein FisN_22Lu266 [Fistulifera sol... [more]
POM64247.12.700e-1560.49Hypothetical protein PHPALM_20246 [Phytophthora pa... [more]
XP_008915726.13.500e-1559.26hypothetical protein PPTG_19126 [Phytophthora para... [more]
XP_002180165.13.500e-1559.26predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_024581380.14.500e-1558.75Uncharacterized conserved protein [Plasmopara hals... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02790.1NO07G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580927gene_2610Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100046g31gene3452Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02790.1NO07G02790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02790 ID=NO07G02790|Name=NO07G02790|organism=Nannochloropsis oceanica|type=gene|length=482bp
ATGgtacgtctcgctctttctctgtgggtccagcagtttaggatcgtcgt
tcaccgctggctgcatgtctgctgtagtcgacgtcttgcgcaaaaacaga
ggactgtctctggcgccgacgcccttgccacagacacatgcatccacacc
cagacacatatgtatccctcccacatcctcgtagtccgctatccacactc
tgacacacatgtatccctcccaaatccccctagTCCGCAATCTTCGATTT
CTCTAGCCTCATTACCGTCATTCTTCTCTTCATCGTCACTTGTACCTATC
TTCGTGGGTTTCGCGCCACGATTTTCGACAATAAACCCTCGGCCGACGGG
GCCATTAATCGGCATGAGGGCTTGCTCGGGTTTTGTTGGAAAGCGTCTCG
GATTGGGGAACGGAAGAGTGAGTGGGTAGGTATGGCATGTGTGATCATGG
CAGTGCATACCTTATTTTTCAAAAAGCCTTAA
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protein sequence of NO07G02790.1

>NO07G02790.1-protein ID=NO07G02790.1-protein|Name=NO07G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MSAIFDFSSLITVILLFIVTCTYLRGFRATIFDNKPSADGAINRHEGLLG
FCWKASRIGERKSEWVGMACVIMAVHTLFFKKP*
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Synonyms
Publications