NO07G02780, NO07G02780 (gene) Nannochloropsis oceanica

Overview
NameNO07G02780
Unique NameNO07G02780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length910
Alignment locationchr7:795042..795951 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:795042..795951 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0070072vacuolar proton-transporting V-type ATPase complex assembly
GO:0070072vacuolar proton-transporting V-type ATPase complex assembly
Vocabulary: INTERPRO
TermDefinition
IPR019013Vma21
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO07G02780 vs. NCBI_GenBank
Match: OQR92312.1 (hypothetical protein ACHHYP_03820 [Achlya hypogyna])

HSP 1 Score: 71.6 bits (174), Expect = 1.600e-9
Identity = 38/90 (42.22%), Postives = 56/90 (62.22%), Query Frame = 0 
Query:    7 NLLMEPQNRHVGHKLFLYTMAMFSVPVLVFFICREWVFVSDPRRRDMWSGFASVASVNVIIALYVVMAFREDKDEEKRQPVPAVGVWAMQ 97
            N   +  NR V  KL L+T+ MF +P+  +++     F++    R MWSGF ++A VNV+I +Y++ AFRED   EK +PVPAVG +  Q
Sbjct:    9 NAANKAHNRAVIAKLGLFTVLMFVLPIATYYLLHN-TFLATWENRTMWSGFGAIAMVNVVIFVYILEAFREDAATEK-EPVPAVGKFKKQ 96
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BLAST of NO07G02780 vs. NCBI_GenBank
Match: XP_012206696.1 (hypothetical protein SPRG_12560 [Saprolegnia parasitica CBS 223.65] >KDO22580.1 hypothetical protein SPRG_12560 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 69.7 bits (169), Expect = 6.000e-9
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 0 
Query:   11 EPQNRHVGHKLFLYTMAMFSVPVLVFFICREWVFVSDPRRRDMWSGFASVASVNVIIALYVVMAFREDKDEEKRQPVPAVGVWAMQ 97
            +  NR V  KL L+T+ MF VP+  +++  +   ++    R MWSGF ++  VNV+I +Y++ AFRED     ++ VPAVG +  Q
Sbjct:   13 QAHNRAVIMKLALFTVLMFLVPIATYYVLHD-TLLAGWENRTMWSGFGAIGMVNVVIFVYILEAFREDAAASSKETVPAVGKFKKQ 97
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BLAST of NO07G02780 vs. NCBI_GenBank
Match: XP_008610932.1 (hypothetical protein SDRG_06899 [Saprolegnia diclina VS20] >EQC35615.1 hypothetical protein SDRG_06899 [Saprolegnia diclina VS20])

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-8
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 0 
Query:   11 EPQNRHVGHKLFLYTMAMFSVPVLVFFICREWVFVSDPRRRDMWSGFASVASVNVIIALYVVMAFREDKDEEKRQPVPAVGVWAMQ 97
            +  NR V  KL L+T+ MF VP+  ++     + V     R MWSGF ++  VNV+I +Y++ AFRED     ++ VPAVG +  Q
Sbjct:   13 QAHNRAVIMKLALFTVLMFLVPIATYYFLHNTLLVG-YENRTMWSGFGAIGMVNVVIVVYILEAFREDAAATSKETVPAVGKFKKQ 97
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BLAST of NO07G02780 vs. NCBI_GenBank
Match: GAX93389.1 (Hypothetical protein PINS_001330 [Pythium insidiosum])

HSP 1 Score: 65.1 bits (157), Expect = 1.500e-7
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 0 
Query:   14 NRHVGHKLFLYTMAMFSVPVLVFFICREWVFVSDPRRRDMWSGFASVASVNVIIALYVVMAFREDKDEEKRQPVPAVGVWAMQRTKE 101
            N+ V  KL  +T+ M  +PV  F+  R  +   D    DMWSGFA++  VN++I LY++ AF E KD+E     PAVG +A +  KE
Sbjct:   21 NQMVWRKLGFFTLLMIVLPVSTFYGVRR-LIKPDTLHADMWSGFAAILMVNIVIGLYILSAFLE-KDDEAPSAPPAVGRFAKETKKE 105
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BLAST of NO07G02780 vs. NCBI_GenBank
Match: XP_009827446.1 (hypothetical protein H257_04570 [Aphanomyces astaci] >ETV82775.1 hypothetical protein H257_04570 [Aphanomyces astaci])

HSP 1 Score: 63.2 bits (152), Expect = 5.600e-7
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 0 
Query:   14 NRHVGHKLFLYTMAMFSVPVLVFFICREWVFVSDPRRRDMWSGFASVASVNVIIALYVVMAFRED 79
            NRHV  KL  ++M MFS+P+  F+     VF  D   + MWSGF ++  VNV+I +Y+V AFRED
Sbjct:   17 NRHVIRKLVFFSMLMFSLPIATFYALNH-VF-RDSENKTMWSGFGAIGVVNVVIFVYIVEAFRED 79
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BLAST of NO07G02780 vs. NCBI_GenBank
Match: XP_008869955.1 (hypothetical protein H310_06605 [Aphanomyces invadans] >ETW00957.1 hypothetical protein H310_06605 [Aphanomyces invadans])

HSP 1 Score: 62.8 bits (151), Expect = 7.400e-7
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 0 
Query:   14 NRHVGHKLFLYTMAMFSVPVLVFFICREWVFVSDPRRRDMWSGFASVASVNVIIALYVVMAFREDKDEEKRQPVPA 90
            NR V  KL  ++  MFS+P+  F++    VF  D   + MWSGF ++  VNV+I  Y++ AFRED    K   VP+
Sbjct:   18 NRQVIRKLVFFSFLMFSLPIAAFYVLNH-VF-RDSENKTMWSGFGAIGVVNVVIVAYIIEAFREDAAAAKDNAVPS 91
The following BLAST results are available for this feature:
BLAST of NO07G02780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
OQR92312.11.600e-942.22hypothetical protein ACHHYP_03820 [Achlya hypogyna... [more]
XP_012206696.16.000e-938.37hypothetical protein SPRG_12560 [Saprolegnia paras... [more]
XP_008610932.11.300e-839.53hypothetical protein SDRG_06899 [Saprolegnia dicli... [more]
GAX93389.11.500e-741.38Hypothetical protein PINS_001330 [Pythium insidios... [more]
XP_009827446.15.600e-747.69hypothetical protein H257_04570 [Aphanomyces astac... [more]
XP_008869955.17.400e-740.79hypothetical protein H310_06605 [Aphanomyces invad... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000584NSK000584Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02780.1NO07G02780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G02780.2NO07G02780.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02780.1NO07G02780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G02780.2NO07G02780.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02780 ID=NO07G02780|Name=NO07G02780|organism=Nannochloropsis oceanica|type=gene|length=910bp
ACAGGCTCTGTCATTGGTCGTCATAGCATCACTGCTCTTCTCCAGCAGTG
GGAACGCGCGTCCCCTGTCAACGTCCACTGCTGCTCCCCTCTTGCCTTCC
ACCGCCCCACCTCCATCATCCATCGTCCCACGTACCAGTCCAACAATGGT
GCTGCAACTCGTCAACCTgtgcgtacagttccctatgcactatctggcag
atttgcccactaatctctgcttcatggtccatcttgttcacaccccgcac
cacttttcccctcgatgcagGCTGATGGAGCCTCAAAATAGGCACGTCGG
ACACAAGCTCTTCCTGTATACCATGGCCATGTTTAGCGTTCCTGTCCTCG
TCTTTTTTATTTGTCGGGAATGGGTGTTTGTGTCGGATCCACGGCGAAGG
GACATGTGGAGgtaagcttcggtggagaaagaggtgaggtgtaatgcgta
cgcgtgcaggcctaggtgagaggggacagcattgggatcacagagcgcac
cacctacaagagattcaattagagcttaaccatacttttgtatttatttc
tatctctatgtttaaagCGGTTTCGCCTCCGTCGCGTCCGTGAATGTCAT
CATAGCCCTGTACGTGGTAATGGCCTTTCGAGAGGACAAAGACGAGGAGA
AACGCCAGCCTGTGCCTGCCGTTGGGGTATGGGCGATGCAGAGGACCAAG
GAACGAACTGATTGAAGAATGAGGAGGTGGAGGTGGCAGGTTATAAAAAG
ATTGGTCCAAATAAAGTACATAGACGCACGTGCTGCCAATTCGCGCCTGC
GCCTAACCCCCACAAGATATCAAGACATATGTACACCGGGGAAAAATGAA
AGAACAATGTACCCATAAGTGCGGAAAATATATGTCTCGATAGAAACAAG
CAGGTAGCGG
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protein sequence of NO07G02780.1

>NO07G02780.1-protein ID=NO07G02780.1-protein|Name=NO07G02780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MVLQLVNLLMEPQNRHVGHKLFLYTMAMFSVPVLVFFICREWVFVSDPRR
RDMWSGFASVASVNVIIALYVVMAFREDKDEEKRQPVPAVGVWAMQRTKE
RTD*
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protein sequence of NO07G02780.2

>NO07G02780.2-protein ID=NO07G02780.2-protein|Name=NO07G02780.2|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MVLQLVNLCVQFPMHYLADLPTNLCFMVHLVHTPHHFSPRCRLMEPQNRH
VGHKLFLYTMAMFSVPVLVFFICREWVFVSDPRRRDMWSGFASVASVNVI
IALYVVMAFREDKDEEKRQPVPAVGVWAMQRTKERTD*
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Synonyms
Publications