NO07G02710, NO07G02710 (gene) Nannochloropsis oceanica

Overview
NameNO07G02710
Unique NameNO07G02710
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2022
Alignment locationchr7:781841..783862 +

Link to JBrowse

Properties
Property NameValue
DescriptionMitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:781841..783862 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Homology
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BLAST of NO07G02710 vs. NCBI_GenBank
Match: EWM27108.1 (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 183.0 bits (463), Expect = 5.100e-43
Identity = 84/104 (80.77%), Postives = 92/104 (88.46%), Query Frame = 0 
Query:    2 FHRYDVTPLPAEASRGQVIVQAVRIRTAGACKHSFLLATFLGLYSGTSCAAEKTIGRRNWATSFVGGFSAGTFAGLTTGHPHHAITWGVGTGLASMIVYALQGG 106
            FHRYD  PLP +ASRGQ++++  R R  GACKHSFLLATFLGLYSG+SC AEKT+GRRNWATSFVGG SAG FAGLTTGHPHHA+TWGVGTGLASMIVY LQGG
Sbjct:   37 FHRYDTVPLPTKASRGQIMLRIFRTRAVGACKHSFLLATFLGLYSGSSCVAEKTMGRRNWATSFVGGLSAGAFAGLTTGHPHHAMTWGVGTGLASMIVYGLQGG 140
The following BLAST results are available for this feature:
BLAST of NO07G02710 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27108.15.100e-4380.77Mitochondrial inner membrane translocase subunit T... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL094nonsL094Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR133ngnoR133Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000578NSK000578Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02710.1NO07G02710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO07G02710.2NO07G02710.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628624gene_2604Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100046g38gene3458Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02710.1NO07G02710.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO07G02710.2NO07G02710.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02710 ID=NO07G02710|Name=NO07G02710|organism=Nannochloropsis oceanica|type=gene|length=2022bp
TACGCTGTCCCTCATTACGCTTCTTTCATTTTCTTACTTCCCATTTTCAG
TCTTTTCCGGCAGCAGTAACTTTCCGTCACCCCGTTCCTCCTCCTTCTCT
CTCTCCCCGTCTATATTTCTTCGAGTAGGCAACCCCCTTCAATTGACAAC
GCACTTCCCGACAGCGCTGTTTGCCAGCTGCCTCCATGGGCAACGGCAGC
TTCCTCCTCGCGCCTCTCTCGTACGAACCCTTGATGACGTTGACATTGAG
ACGGAAGAGATACATCATTTCCTCCAACGGTGCAGTTTCCTCCTTATCCT
CCCTCTCTTCCTCTCGCCCGCTCCCATCTGCTTTGTCATTCAATCGTTTT
GCACCTTTTCCCGTCAAGCCGACATAATCCTTGAGTAGAAAATACAAGGC
TTCGGCGGAGGACAACAAACCCTCTCCCTTTGAGTGATAGCGCCAACACA
ATGATTCTTTCGGAGGGTCCTTTAGCTTCACCCTTTTGGTCAACCTCGTG
ATCCCTGGGTGCTCTAACACCTTGGTTGTATTATTCCATCGTGAATCCAA
AACAACCACACGTTCAATTGATGCGAGATCTGCAACGGGAAGCTCATCAA
GTGTGATTGCGTCTTTGGAGGGAAAGAGAACGAGAGTCTTCTCCACATCC
CAATTTTCCCTTTCCAGTGCCTCCAAACCCCCGGTCCACGAATCCCATAC
ACGGATAGAAGAGGAAGCAACCACACCTACTTGAATAGCAGTGGATTTTT
TGCGGTTATCGGCCAGCACAATGTCCACATTCACGGGTAGGCGTAGGCGA
GGAGCGTCCACATGCGAAGGCACCCCTATCCAGCAGACGCAATTCGCACA
GTAAAAACGTTTTTCCGCCGTACATCCATCGGTGGGACAAGGTGATTTGA
CCCAGTCGTCCACCAGGTAAGGTAGAGGCGCGGCCAGGTAGGCTTGGAGC
AAGGCGCTCGCATTGGGTGGGGAGGTTGACGATTCCATGTTGCAGACCGC
AACGCCTGAGGCCCACAATGCCTGGATCACGAGCACCCGGCTGTAATCCT
TGCAACTATGTTGTTTGTGATTGTTACGTCGCAGGCGTAAGTCTTTAAAA
ACAGGTGTATGCAAAGGGGTCAGCTGGATCATTCCCCTCGACATGGACGG
CGACGACGAGCAATGTTACTAACATCACTCTGTCGCCCCTCAAACCACAC
TACTACTCATCTAGCAGCCCCATGCCGGTGGCATACCCAACTCAAAGGTA
CAGTCCGCCATGCGACGCGCGACTGGCAGAAGGTAAGAGACACTGGGCTA
TTATATTGCCACACCCACTCCACTCCCCCCTCTCCCACCCTCCCTAATCT
CTCGTCCTCTGTCTCTTGACTCCCCCAACCATTTCCCTCCAGGGTGTATT
CGTGGCTTCTATGTTGGGGCATTGTGGGGCGCCATGTTTCATCGGTACGA
TGTCACACCTTTACCGGCAGAGGCGTCGCGAGGACAAGTCATTGTCCAAG
CCGTGAGAATACGGACCGgtgcgtgacgggaaggtaggggatggaagggc
aaccgcatgcgctgaatgctcgcgaaggctaattcacaccctgacatctg
ataactttccatttaaccacagCCGGCGCCTGCAAGCATTCCTTCCTCCT
GGCCACGTTCCTGGGGCTGTACAGTGGCACCTCGTGCGCAGCGGAGAAGA
CAATCGGGCGACGGAATTGGGCCACCAGTTTTGTGGGAGGTTTTAGCGCA
GGCACTTTCGCAGGGCTTACAACAGGCCACCCGCATCATGCAATTACTTG
GGGGGTAGGGACGGGCTTGGCGAGCATGATTGTGTATGCTTTACAGGGCG
GCGGGCCGTGAGGAGGTGGGGCATGGGCCATGATGCAAGGCGGTGTGGAG
GAGGCCTGGGAAAGGAAAGAATAGCGATATTCCAAATGTACGAATCAATT
TATCAAAGAAGAAAACTATTGTGCCCTTGATTAGATTTAGACGTCTGTTT
GGGAAATGTTCACGGGAAAAAA
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protein sequence of NO07G02710.1

>NO07G02710.1-protein ID=NO07G02710.1-protein|Name=NO07G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MPVAYPTQRYSPPCDARLAEGCIRGFYVGALWGAMFHRYDVTPLPAEASR
GQVIVQAVRIRTAGACKHSFLLATFLGLYSGTSCAAEKTIGRRNWATSFV
GGFSAGTFAGLTTGHPHHAITWGVGTGLASMIVYALQGGGP*
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protein sequence of NO07G02710.2

>NO07G02710.2-protein ID=NO07G02710.2-protein|Name=NO07G02710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=108bp
MFHRYDVTPLPAEASRGQVIVQAVRIRTAGACKHSFLLATFLGLYSGTSC
AAEKTIGRRNWATSFVGGFSAGTFAGLTTGHPHHAITWGVGTGLASMIVY
ALQGGGP*
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Synonyms
Publications