NO07G02540, NO07G02540 (gene) Nannochloropsis oceanica

Overview
NameNO07G02540
Unique NameNO07G02540
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3825
Alignment locationchr7:732693..736517 -

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Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:732693..736517 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G02540 vs. NCBI_GenBank
Match: EWM27093.1 (hypothetical protein Naga_100046g4 [Nannochloropsis gaditana])

HSP 1 Score: 246.5 bits (628), Expect = 4.400e-61
Identity = 400/1318 (30.35%), Postives = 524/1318 (39.76%), Query Frame = 0 
Query:    5 NVDAEANDLAQYLR-QEXXXXXXXXXXXXXXXXXXXXXXXLKSPSLASILGAPTPSPNRRLLFDRDRDPQRAPFQSLDDLSNHHDRAQSLASDKKERVANSSFISTSSAGDNDNMTPIGKMGVSPIFRSPLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVEKSPSSLTPKHENETG-STSSSLSQKSG--RDMDSPIFYLXXXXXXXXXXXXXXXXXXYLDEKIAEVEENGVAAGEKGSRRNHASDEQQQEGVEYENITPTNASTASSPLLTSSTTSVKGMSPTLXXXRQFSXXXXXXXARPI---QPSCQPLRTFASPMPTFPRVXXXXXXXXXXXXXXXXXXXXXXXXXVDALISRAHAIHTPDVVEKERIKSWFSDRMLSAVKKFVWQDTQCQDLSGRPGAQQRQQQQHD-KISRRGEGREEGYLSTIHKEGDNGGEFLSIADLSDKSASLSLAEVKGKGKAGRGGEV-RFHSQT----SSISSFFASSSRQIGTNKMDVPVMESAQQLLQQPRWSIYTMEPPVSXXXXXXXXXXXXXXXXKPAERWDGFPTIPRSVQSPPSSTVSSSGDLTKAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPEGDSLFSISLPLLTGARRGWGADSACSRHRPELRSGHGQGNEKEDEGRTQVRRRMLALSSTGDDIRRDSESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPASSRGQIPFHXXXXXXXXXXXXXXXXXXXERGLSPSRPPPPTARLPHLYSPLQPAASLPQSEEGRKKGLTTHRTFEGLLQESDVEVSRRNSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVMPDVSLPITWREVLVGCAASRELQLRNCRPGPCIVHVAFTFHHQEDEDEEGGEAKREKEGCFHVSSCGKVREKDGEVVGADGILRLLITFLPVHSGLHRATLHLRVGVPVEEGRGAGEGKRGGGREEGMYDVDLVGTATDGE-------VGTAGG------IGGVVKTPLQLEVNFSDRSAKNRYLRRLYPS---RKGKDAAV----AVGAKSLRISDESP--MSPTHSTPTQPSSSNSAFLSSSSGTPGVGFAQTFINFGKQPLGSVNIQRVRLCNPLSAPQLVVLESASLPFVLAHRVIKLRPKAFVKLPLRFVPVHRGEFAVTLRANVHALHGEGQGIK------NGGSSR-------DITLELRGQVE 1275
            NV  EA++LA YL  +E                        +SP+LASILGA TPSPNRRLLF  DRD  RAP Q LDDL+NH            E++  S+ +  + AG  +  TP  +   + IF+SP                              DV K       +HE+     T  S + + G   +  SP FYL                  +L+E  A V+E    A  +  R   A  E ++        TP ++S +SSP   +S ++ +    T               A P+    P+       +SP P  PR+                         V  L++RA A+ TPD ++  RIKSWFSDRMLSAVKKFV+QDTQ       P   + +   H  K+            +    EG   G     +    + A+L  A+    G   R     R  S T    ++++S     +RQ   +++        +Q  Q      Y   P  S                K   R      +PR   +P ++ + +  DL+  +   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                              E         S P      RGWGAD++CSRHRPELR G G   E    G + V R  L   S G+   ++   G                                                                             SS+ Q                         G S     PP   LP+LYSPLQ           R++    HR     L E +   SR+ S P                                               PV     + I WR + VGCAA R+L LRN RPGPCIVH+AFT H  E              GC+ VSS  K RE+D EVVG+DG+LRLL+TF P   GLHRATLH+RV  P             GG ++ ++DV+LVG A   E           GG       G   + P  LE   S    K+  ++         KG+   +    +VG   +   DES   MS +H     P S+   FL S      V FAQ  ++FG  P+GSV+++RVRLCNP + PQLVVLE ASLPFVL HRVIKLRP+A+V+LP+RF+PV +GE+  TLRA+VH +  + + I       + G  R        I LELRGQ E
Sbjct:    6 NVLHEADNLANYLHMEEDAENRNPTAMSPGKRSNKSRERKTRSPTLASILGATTPSPNRRLLF--DRDASRAPLQCLDDLANH------------EKMFKSNQVG-NKAGSFET-TPDKRWSATSIFQSPCA-----------------SKKVERTTNFDDVRKRSGKAANRHESNCELPTPDSENARRGLVGEETSPFFYL-STDSSEDDNEDAVEGAIFLEE--ASVDERDDLAPRR--RATDAQKESERAVSVPPTATPESSSLSSSPRPDTSKSTGEATLRT--------------KALPVADHAPASCDHAVVSSPSPVQPRI---PPSLSPKIPRSIYSSTLSETQTVRTLLARARAVETPDEIKDGRIKSWFSDRMLSAVKKFVFQDTQPVPGRSLPHEDENEICSHSTKMECTASFLPSRPTTADAVEGTLSG---GASRTGLQPAALIAADPDVSGHTTRRMLARRLASSTVPAPAALASLAGGETRQSQRSELGKGRGRWEEQHQQ------YQEGPTPS--EMLASDVGLLGSDDKCTGRDFSSSALPR---TPCAAQIRTPSDLSAELSPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPLPDASVTASSATCAPPTSALTVTQQRHEN--------SAPACILNPRGWGADASCSRHRPELRGGQGTDAE---GGDSSVVREALGAMSKGE--TKECVGGQAKVVAPSPNLKSVLDVLAVASSQTSASSSPVFLLKESPSSEEERRAPLSCSFL---------------------EGSSKEQ-----------------------HAGCSAPLAAPPLPELPNLYSPLQ----------CRRRATGEHRDVGASLSELERAASRK-SCP-ENGRTCALAPRSGSTLSLRQMEQADARTGIPTSDSNARDSTTATAPPVEDSDPVCIAWRGLPVGCAAPRDLYLRNSRPGPCIVHIAFTHHEGEG-------------GCYQVSSSNKEREEDEEVVGSDGVLRLLVTFRPRRPGLHRATLHVRVSRP-----------HRGGHKDAVHDVELVGLAIVPEGLNGRTAYARVGGEASRAYTGHNREQPEGLE-KLSGIGRKSHDVKNFLAESEREKGRGGGMKPPSSVGGGKIGARDESDPCMSLSH-----PPSTIPHFLQSH-----VAFAQGLLSFGNHPVGSVSVERVRLCNPSTVPQLVVLERASLPFVLTHRVIKLRPRAYVQLPIRFIPVQQGEYECTLRASVHPVIEDEEVISVDSKVLSSGDFRLSCRRGKSIALELRGQGE 1150
The following BLAST results are available for this feature:
BLAST of NO07G02540 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27093.14.400e-6130.35hypothetical protein Naga_100046g4 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR072ncniR072Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000606NSK000606Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02540.1NO07G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580826gene_2582Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02540.1NO07G02540.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02540 ID=NO07G02540|Name=NO07G02540|organism=Nannochloropsis oceanica|type=gene|length=3825bp
ATGGCAACAACCAATGTCGATGCCGAGGCCAATGACCTGGCGCAGTATCT
GCGGCAGGAGGAGGACTCGGAGAACCGCACGCCGGTGGCTGCGTCGAGCC
ACAAGAAACGACGAGAGCACCATCAGCAACTGAAGAGTCCAAGCCTCGCC
TCTATACTTGGTGCGCCGACGCCCTCCCCGAACCGTCGACTGCTGTTTGA
CCGTGACCGGGACCCGCAGCGGGCACCCTTTCAAAGCCTTGACGACTTGA
GCAACCATCACGACCGAGCGCAGTCTCTTGCCTCGGACAAAAAGGAAAGG
GTGGCCAACAGCAGCTTCATCAGTACCAGCAGCGCGGGCGACAACGACAA
CATGACACCCATCGGCAAGATGGGTGTCAGCCCTATCTTTCGTTCCCCTT
TGACCACGACAAAACCCGAAAAAAAACACGGTGGTAGCAGCAGCGATGCC
AGGAGTGCGACAAGCAGCAGCGGTCGTCGTCGGTTGATAGATGTGGAGAA
GAGTCCGTCATCATTGACCCCCAAGCACGAAAATGAAACCGGCAGTACCT
CCAGTAGCCTCAGCCAGAAGTCTGGTAGGGACATGGATAGTCCCATATTT
TATTTGAGCTCTGATTCGAGCGATAATGATGACGATGAAGAGGGAGCGGA
AGCGGCCCTGTATTTGGACGAAAAAATAGCGGAGGTAGAAGAAAACGGAG
TAGCAGCAGGTGAAAAAGGAAGTCGACGGAACCATGCAAGCGACGAGCAA
CAACAAGAAGGAGTAGAATATGAGAATATCACACCCACCAACGCGTCTAC
TGCCTCTTCCCCTCTACTCACTTCCTCTACCACAAGTGTCAAAGGCATGT
CCCCCACGTTGTCAACGACACGACAATTCTCCTCCTCCGGCTCTCCTACC
CTCGCCCGTCCTATTCAGCCCTCTTGTCAGCCACTCCGGACCTTCGCCTC
CCCCATGCCTACATTTCCCCGTGTCCCCGCACCTTCTCCTATCTCTCCCA
TCTCTCCTCCCCCACCCGGACTCCAAGCACCAGCGCCAAGCACCCCGTCA
GTAGATGCCCTGATATCCCGGGCTCACGCAATCCATACACCTGACGTCGT
TGAGAAAGAGAGGATTAAGAGTTGGTTTAGCGATCGCATGCTTTCTGCAG
TCAAGAAGTTTGTGTGGCAGGACACACAGTGTCAGGATCTCTCCGGACGG
CCTGGCGCGCAGCAGCGGCAGCAGCAGCAACACGACAAAATTTCTCGTCG
AGGGGAGGGAAGAGAAGAAGGATATCTGTCTACGATACATAAGGAGGGAG
ATAATGGTGGTGAATTCCTTTCTATTGCTGACTTGTCCGACAAGTCGGCG
TCGTTATCGTTGGCGGAAGTGAAGGGAAAAGGGAAGGCCGGGCGTGGTGG
GGAAGTGCGCTTTCATTCGCAGACGTCTTCAATCTCCTCCTTCTTCGCCT
CGTCTTCTCGGCAAATCGGCACCAATAAGATGGACGTACCGGTAATGGAG
AGCGCACAGCAGCTATTGCAGCAGCCACGCTGGTCTATCTACACGATGGA
GCCCCCCGTGTCTCCTCCGCGCCAACTGCAGCAGCACCAGCAGCAGCACC
ACCACCACCCAAAGCCAGCGGAGCGTTGGGATGGCTTTCCTACCATTCCT
CGGTCTGTTCAATCTCCGCCTTCTTCGACCGTCAGTTCCTCCGGTGACTT
AACCAAAGCGGTCTCCTCCCAAGCAGCAGCAGCAGCAGCACGCGCAGCGG
CTAGGGCGGCAGCAGTAGCAACAGCAGCAGCAATAGCTGTATCCAGTTCG
GCGTCTTCAAGCAGAGAAAGACCCTTTTCTGCTTCTGCTGCCGCTGCGGT
CCCGTCCTCCTCTCTCTCCTCCTCATTTTCCTCGTCTTCCTCCTGTGTGT
CTGCCCCCTCCCTTTCTGCTGCAGAAAGGAAAAAGGAGCCAGAGGGAGAC
TCCCTCTTTTCGATCTCTCTTCCTCTTTTGACCGGGGCTCGCCGTGGGTG
GGGGGCAGACAGTGCCTGTTCGCGGCATCGACCCGAACTACGCAGTGGTC
ACGGGCAGGGGAACGAGAAGGAGGACGAAGGCCGAACGCAGGTCCGACGG
CGGATGCTGGCTCTTTCCTCTACAGGTGACGATATCAGGAGGGACAGTGA
GAGCGGCAGCAGCAGCAGTAGCATGAATGGTACGGGCATGAGGGAAGGCA
GGAAGGGCAACTGCAGCAACAGCGCTAGCAGTAGTGCCAGCCTCAGCAGT
AGAGCGATGGTCACCACCGCATTTCCAACGAGTCCCAAGTCGGTGCTGGA
AGTGCTAGCTATGGCTTCCTCCTCCCCTACCTCCTTCGCTGCCTCCCTTG
CGTCCTGCTCTTCCTCTATCTCCTCCTTCCGTCCCGCTTCTTCCCGTGGG
CAGATACCTTTCCATTTTAGCATGAGCAGCGATGAAGAACAGGAGCAAGA
GCAAGAAGTTGCAGAGGCAGCAGAGCGGGGCCTGTCACCAAGCCGCCCTC
CTCCACCAACCGCACGGTTGCCCCATTTATATTCGCCTCTGCAGCCTGCT
GCTTCTTTGCCGCAAAGCGAGGAAGGTAGAAAGAAAGGACTAACAACTCA
TCGAACATTTGAAGGATTACTTCAGGAAAGCGATGTGGAGGTGTCTCGCC
GCAATTCTGCACCGTCCTCTAATTCCTCCTCCTTTTCCCCGTCGTCCATC
TCCTCTTCCTCAACTTTATCGCCTTCTGCACCTTCACCTTCGTACCCCAA
CAAGCCGACTTGTATTACAACAATCGCCGCTACTACTGCTGCTCGTCCTT
CCCCTCCAGTCATGCCCGACGTTTCCTTGCCAATCACTTGGCGCGAAGTC
TTAGTGGGCTGTGCCGCTTCCCGTGAACTTCAACTCCGAAACTGTCGGCC
TGGCCCTTGCATTGTTCACGTTGCCTTTACCTTCCATCATCAGGAGGACG
AGGACGAAGAAGGGGGGGAGGCCAAGAGGGAGAAGGAGGGTTGTTTTCAC
GTGAGCAGCTGCGGCAAGGTCCGGGAGAAGGACGGGGAGGTAGTGGGTGC
TGACGGCATTCTACGTTTGTTGATTACCTTTCTTCCTGTGCACTCAGGCT
TGCATCGTGCCACGTTGCATTTGCGTGTGGGTGTGCCTGTTGAGGAGGGT
AGAGGAGCGGGAGAAGGAAAAAGAGGAGGGGGAAGGGAAGAAGGGATGTA
CGACGTTGACCTGGTGGGAACGGCGACTGACGGAGAAGTGGGGACAGCGG
GAGGGATTGGAGGAGTGGTTAAGACACCCTTGCAGCTGGAGGTGAATTTT
AGTGATCGAAGCGCCAAAAACAGATATTTGAGGAGGCTCTACCCCAGCAG
GAAGGGAAAGGATGCGGCAGTAGCAGTGGGCGCGAAGTCATTAAGAATCT
CGGATGAGTCCCCCATGTCTCCAACACACTCGACACCAACACAACCATCG
TCCTCCAATTCCGCCTTTTTATCTTCTTCTTCCGGGACCCCTGGGGTAGG
TTTTGCTCAAACCTTTATCAACTTTGGGAAGCAACCACTGGGCAGCGTGA
ACATCCAGAGGGTGCGGCTGTGTAACCCTCTTTCCGCGCCGCAGCTGGTT
GTGTTGGAATCTGCCTCCCTTCCCTTCGTCTTGGCCCATCGGGTCATAAA
GCTGAGACCGAAGGCTTTTGTCAAGCTTCCTTTGCGGTTTGTGCCGGTGC
ATCGTGGTGAGTTCGCAGTTACCTTGCGGGCAAATGTGCATGCTTTACAC
GGGGAGGGGCAGGGGATTAAAAATGGTGGGAGTAGCCGGGACATAACGCT
GGAATTGCGTGGACAAGTGGAGTGA
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protein sequence of NO07G02540.1

>NO07G02540.1-protein ID=NO07G02540.1-protein|Name=NO07G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=1275bp
MATTNVDAEANDLAQYLRQEEDSENRTPVAASSHKKRREHHQQLKSPSLA
SILGAPTPSPNRRLLFDRDRDPQRAPFQSLDDLSNHHDRAQSLASDKKER
VANSSFISTSSAGDNDNMTPIGKMGVSPIFRSPLTTTKPEKKHGGSSSDA
RSATSSSGRRRLIDVEKSPSSLTPKHENETGSTSSSLSQKSGRDMDSPIF
YLSSDSSDNDDDEEGAEAALYLDEKIAEVEENGVAAGEKGSRRNHASDEQ
QQEGVEYENITPTNASTASSPLLTSSTTSVKGMSPTLSTTRQFSSSGSPT
LARPIQPSCQPLRTFASPMPTFPRVPAPSPISPISPPPPGLQAPAPSTPS
VDALISRAHAIHTPDVVEKERIKSWFSDRMLSAVKKFVWQDTQCQDLSGR
PGAQQRQQQQHDKISRRGEGREEGYLSTIHKEGDNGGEFLSIADLSDKSA
SLSLAEVKGKGKAGRGGEVRFHSQTSSISSFFASSSRQIGTNKMDVPVME
SAQQLLQQPRWSIYTMEPPVSPPRQLQQHQQQHHHHPKPAERWDGFPTIP
RSVQSPPSSTVSSSGDLTKAVSSQAAAAAARAAARAAAVATAAAIAVSSS
ASSSRERPFSASAAAAVPSSSLSSSFSSSSSCVSAPSLSAAERKKEPEGD
SLFSISLPLLTGARRGWGADSACSRHRPELRSGHGQGNEKEDEGRTQVRR
RMLALSSTGDDIRRDSESGSSSSSMNGTGMREGRKGNCSNSASSSASLSS
RAMVTTAFPTSPKSVLEVLAMASSSPTSFAASLASCSSSISSFRPASSRG
QIPFHFSMSSDEEQEQEQEVAEAAERGLSPSRPPPPTARLPHLYSPLQPA
ASLPQSEEGRKKGLTTHRTFEGLLQESDVEVSRRNSAPSSNSSSFSPSSI
SSSSTLSPSAPSPSYPNKPTCITTIAATTAARPSPPVMPDVSLPITWREV
LVGCAASRELQLRNCRPGPCIVHVAFTFHHQEDEDEEGGEAKREKEGCFH
VSSCGKVREKDGEVVGADGILRLLITFLPVHSGLHRATLHLRVGVPVEEG
RGAGEGKRGGGREEGMYDVDLVGTATDGEVGTAGGIGGVVKTPLQLEVNF
SDRSAKNRYLRRLYPSRKGKDAAVAVGAKSLRISDESPMSPTHSTPTQPS
SSNSAFLSSSSGTPGVGFAQTFINFGKQPLGSVNIQRVRLCNPLSAPQLV
VLESASLPFVLAHRVIKLRPKAFVKLPLRFVPVHRGEFAVTLRANVHALH
GEGQGIKNGGSSRDITLELRGQVE*
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Synonyms
Publications