NO07G02460, NO07G02460 (gene) Nannochloropsis oceanica

Overview
NameNO07G02460
Unique NameNO07G02460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1972
Alignment locationchr7:711764..713735 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:711764..713735 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G02460 vs. NCBI_GenBank
Match: EWM27129.1 (hypothetical protein Naga_100419g2 [Nannochloropsis gaditana])

HSP 1 Score: 811.2 bits (2094), Expect = 2.100e-231
Identity = 413/565 (73.10%), Postives = 472/565 (83.54%), Query Frame = 0 
Query:   10 VARLLGAAASSLLFVSSTSAQSFPGCSSADMRQLTFVGRGLMGCFSLSLSEVFMFMGGMSADQDAWLERCSQSSEDYQSECFQLLESFLQQAASQPGSLPAKVVSNVYKNPPQVLDCVAQINNQVETFSPTCKDGAMLGQITRASARLAPYIDSIQPWRLPPQIQGCAVNDLLNLQLAYLPFIDCLNFNFTQLAEGFTTSSGPGMGAQLEDATIRAGISCLYDPHMSNADCMYLVVVASTKLQGGSWSDMGVYAMRALTDYPQACQCVRGASQSAAFSAVATSCPAHDTLNFLTALEASCAFEPQIQSSLSKALNGCSDADVVRTELVGLQVLDCMEANGGDLAGSTDVLTEARVAQIANCVNKPGYDNAECLGLLGSLARIAADEPDSLEAQVVEKMTKDGAAFCGCLDRAARSPPAKDLSPTCEVPYSGIKFLQDNKKYCEAIAAVPPSFWTAAAAGIAAAAKAPLSSETVPKAGEKPTETPVTEEVELGPTGPKHLPQKSDSGFWDHLPAFSSASFMSQSSESDEGGKDVETGRRLEHGGDDKLRLVGGAKAELVGEHPHLR 575
            VA +  AAA SLL  SSTSAQ+FPGCSS DMRQLT+VGRGLM CFSLSL EVFMFMGG+S+DQ  WL+RCS+SS+ YQ+ECFQLLES LQQAASQPGS+PAKVV  +Y+NPP+VL+CVA++NNQV +FSPTC DG  LGQITR+SARLAPY++SI+PW LPPQ++GCAVNDLLNLQLAYLPFIDCLNFNFTQL EGF +SS P MGAQLEDATIRAGISCLYDPHM+N+DCMYLV++A+TKLQGGSWSDMGVYAMRALTDYPQACQCVRGASQSAA+ AV+TSCPAHD+LNFLTALEASCAFEPQIQSSLSKALNGCSDADVVR ELVGLQ+LDCM A+GGDLAGSTD LTEAR+AQIANCVN PGY+NAECLGLLGSLARIAAD PDSLEA++V++MT DG+ FC CLDRAA SPPA DL   CEVP+SG+ FL++NKKYCEAIAAVPP+FW  AAAGI AAA APLS+ET        +  P  + VE+ P+       K     W +LP  SS+  +S  S+S+   + +   RRLE G D K RLVG  KAE+V    HLR
Sbjct:   38 VAHITFAAAMSLLLASSTSAQTFPGCSSTDMRQLTWVGRGLMNCFSLSLGEVFMFMGGLSSDQSIWLDRCSESSDQYQNECFQLLESILQQAASQPGSVPAKVVGVIYQNPPEVLNCVAEVNNQVGSFSPTCTDGVSLGQITRSSARLAPYVNSIKPWHLPPQMEGCAVNDLLNLQLAYLPFIDCLNFNFTQLIEGFGSSS-PNMGAQLEDATIRAGISCLYDPHMTNSDCMYLVILATTKLQGGSWSDMGVYAMRALTDYPQACQCVRGASQSAAYQAVSTSCPAHDSLNFLTALEASCAFEPQIQSSLSKALNGCSDADVVRAELVGLQILDCMGADGGDLAGSTDELTEARIAQIANCVNDPGYENAECLGLLGSLARIAADAPDSLEAKLVDEMTTDGSEFCACLDRAAHSPPANDLGAVCEVPFSGVDFLRENKKYCEAIAAVPPAFWATAAAGIVAAANAPLSTETA--TVHSVSTRPGQDTVEISPSSSHR--GKDKGNLWGYLP--SSSGVLSYFSDSEATNEQI---RRLEEGKDGKFRLVGKPKAEIVEGQMHLR 592
The following BLAST results are available for this feature:
BLAST of NO07G02460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27129.12.100e-23173.10hypothetical protein Naga_100419g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL100nonsL100Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000614NSK000614Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02460.1NO07G02460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580804gene_2571Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100419g2gene3424Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02460.1NO07G02460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02460 ID=NO07G02460|Name=NO07G02460|organism=Nannochloropsis oceanica|type=gene|length=1972bp
ACAAAAGATCTGACCATGGTGGGTTTCCTTCCTCGTGTCGGCGTCGCCCG
CCTTTTGGGCGCTGCCGCGTCTTCGCTGCTGTTCGTCTCATCCACATCAG
CCCAAAGCTTTCCAGGTTGCTCGTCAGCCGATATGCGCCAGCTCACGTTT
GTCGGCCGGGGGCTGATGGGCTGCTTTAGCTTGTCCTTGAGCGAGGTGTT
CATGTTCATGGGGGGGATGTCGGCGGATCAAGACGCGTGGCTGGAGCGCT
GCTCCCAGTCATCGGAAGACTATCAAAGCGAATGCTTTCAGCTCCTCGAG
TCTTTTTTGCAGCAGGCCGCCAGTCAGCCAGGTTCTCTGCCAGCCAAGGT
AGTGAGCAACGTGTACAAGAACCCGCCCCAAGTGCTCGATTGCGTGGCGC
AGATCAACAACCAGGTGGAAACGTTTAGCCCCACGTGCAAGGATGGTGCC
ATGCTCGGGCAAATCACCCGGGCATCAGCTCGCCTGGCACCTTACATTGA
CAGCATCCAGCCTTGGCGTTTGCCTCCCCAAATTCAGGGATGTGCGGTGA
ACGACTTACTGAACTTGCAGCTGGCTTATTTGCCTTTTATTGACTGCCTG
AATTTCAATTTCACCCAGCTCGCGGAGGGCTTCACGACGTCAAGCGGCCC
TGGAATGGGTGCGCAATTGGAGGACGCCACTATCCGTGCAGGAATTAGCT
GCTTGTATGACCCACATATGAGTAATGCCGATTGTATGTACTTGGTGGTC
GTGGCTTCGACCAAGTTGCAGGGTGGGAGCTGGAGTGACATGGGGGTATA
TGCCATGCGGGCCTTGACTGACTACCCGCAAGCCTGTCAGTGCGTCCGTG
GAGCGAGCCAATCCGCAGCCTTCTCGGCGGTGGCGACCAGCTGCCCCGCA
CATGATACGTTGAATTTCCTGACGGCCTTGGAAGCGTCCTGTGCGTTTGA
GCCGCAGATCCAGTCGAGTTTGAGCAAGGCGCTGAATGGCTGCTCGGATG
CAGATGTGGTGCGGACAGAGTTGGTTGGGCTGCAGGTTCTTGATTGTATG
GAGGCAAACGGGGGGGATCTAGCGGGGAGCACGGATGTGTTGACGGAGGC
GAGGGTTGCTCAGATTGCCAACTGTGTGAATAAGCCCGGGTATGATAATG
CAGAGTGCTTGGGCTTATTAGGTTCGCTTGCCCGCATTGCGGCAGATGAG
CCTGATAGCTTGGAGGCGCAGGTGGTGGAGAAGATGACAAAAGACGGGGC
GGCTTTTTGTGGATGCTTGGACCGGGCGGCTAGGAGCCCTCCGGCAAAAG
ACTTGTCGCCCACATGCGAGGTGCCTTATTCGGGGATCAAATTTCTACAA
GACAACAAGAAATACTGCGAGGCCATTGCGGCCGTGCCTCCCTCTTTTTG
GACGGCGGCAGCTGCGGGGATTGCAGCTGCGGCCAAGGCGCCCTTATCTT
CCGAGACGGTACCAAAGGCGGGGGAAAAGCCGACCGAGACCCCAGTGACG
GAGGAGGTGGAGCTGGGGCCGACCGGACCAAAGCATCTTCCTCAAAAATC
GGACAGTGGCTTTTGGGACCATTTGCCGGCCTTTTCTTCGGCGAGTTTTA
TGAGTCAGTCCTCGGAGTCGGATGAAGGCGGAAAGGATGTGGAGACAGGA
AGGCGATTGGAGCATGGCGGGGACGACAAGCTACGTCTTGTGGGGGGAGC
GAAGGCCGAGTTGGTGGGCGAGCACCCACATTTGCGGTTCAAAGGAAATA
CCCAAAAGCAGAAGGAGGCGTAACTCATGGTAATGAATGTATCCAGACAG
AAGGGGTTGAACTAAATGTGTGTGAGAGAAGAAATGCTAGGGTGTATGAG
TAAGATGAAAATAGATGCGTGCTAGCAAGAGGCGGGGAATTTACATTTCA
CTGTGGCTCTTTCGACTGGAATCGAGAAACAAAGACTCAAATGAAATGCC
GCGAAGCTTTGAAATGAAATGA
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protein sequence of NO07G02460.1

>NO07G02460.1-protein ID=NO07G02460.1-protein|Name=NO07G02460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MVGFLPRVGVARLLGAAASSLLFVSSTSAQSFPGCSSADMRQLTFVGRGL
MGCFSLSLSEVFMFMGGMSADQDAWLERCSQSSEDYQSECFQLLESFLQQ
AASQPGSLPAKVVSNVYKNPPQVLDCVAQINNQVETFSPTCKDGAMLGQI
TRASARLAPYIDSIQPWRLPPQIQGCAVNDLLNLQLAYLPFIDCLNFNFT
QLAEGFTTSSGPGMGAQLEDATIRAGISCLYDPHMSNADCMYLVVVASTK
LQGGSWSDMGVYAMRALTDYPQACQCVRGASQSAAFSAVATSCPAHDTLN
FLTALEASCAFEPQIQSSLSKALNGCSDADVVRTELVGLQVLDCMEANGG
DLAGSTDVLTEARVAQIANCVNKPGYDNAECLGLLGSLARIAADEPDSLE
AQVVEKMTKDGAAFCGCLDRAARSPPAKDLSPTCEVPYSGIKFLQDNKKY
CEAIAAVPPSFWTAAAAGIAAAAKAPLSSETVPKAGEKPTETPVTEEVEL
GPTGPKHLPQKSDSGFWDHLPAFSSASFMSQSSESDEGGKDVETGRRLEH
GGDDKLRLVGGAKAELVGEHPHLRFKGNTQKQKEA*
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Synonyms
Publications