NO07G02430, NO07G02430 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO07G02430 vs. NCBI_GenBank
Match: EWM27128.1 (small nuclear ribonucleoprotein associated protein b [Nannochloropsis gaditana]) HSP 1 Score: 200.7 bits (509), Expect = 4.800e-48 Identity = 111/132 (84.09%), Postives = 113/132 (85.61%), Query Frame = 0 Query: 1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXAKATPGGPGIGRAAGRGIAVGAPVMGAPVGLA 133 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVK+KKGS GP MLGLVLLRGENVVSLTVEGP XX AKATPGGPG+GRAAGRGIAVGAPVMGAPVGLA Sbjct: 35 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGP-TAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPXXDEEAKATPGGPGMGRAAGRGIAVGAPVMGAPVGLA 165
BLAST of NO07G02430 vs. NCBI_GenBank
Match: GAQ88900.1 (snRNP [Klebsormidium nitens]) HSP 1 Score: 160.2 bits (404), Expect = 7.200e-36 Identity = 93/153 (60.78%), Postives = 108/153 (70.59%), Query Frame = 0 Query: 1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGP---XXXXXXAKATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTPAG 151 MSMSKSSK+L++INYRMRVT+QD R LVG FMAFD+HMNLVLGDCEE+RK+ KKG ++ LGL+LLRGE VVSLTVEGP A A GGPG+GRAAGRGI AP+ A GLAGPVRG+GGPA ++M P G Sbjct: 1 MSMSKSSKLLHHINYRMRVTLQDGRQLVGKFMAFDKHMNLVLGDCEEFRKLPQKKGKSA--------EDREERRTLGLLLLRGEEVVSLTVEGPPPQEESRAKAMAASGGPGVGRAAGRGIPT-APLGQAAPGLAGPVRGVGGPAAAMMQPQG 144
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_016165879.1 (small nuclear ribonucleoprotein-associated proteins B and B' [Arachis ipaensis] >XP_020962665.1 small nuclear ribonucleoprotein-associated proteins B and B' [Arachis ipaensis]) HSP 1 Score: 158.7 bits (400), Expect = 2.100e-35 Identity = 95/153 (62.09%), Postives = 103/153 (67.32%), Query Frame = 0 Query: 1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXA-----KATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149 MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+ KG + LGLVLLRGE V+S+TVEGP A GGPGIGRAAGRGI APV+ A GLAGPVRG+GGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTA-----PGEDREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVNAAAMGGPGIGRAAGRGIP-AAPVVQAQPGLAGPVRGVGGPAPGMMQP 147
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_017430706.1 (PREDICTED: small nuclear ribonucleoprotein-associated protein B-like [Vigna angularis] >KOM46495.1 hypothetical protein LR48_Vigan07g019900 [Vigna angularis]) HSP 1 Score: 157.9 bits (398), Expect = 3.600e-35 Identity = 100/155 (64.52%), Postives = 107/155 (69.03%), Query Frame = 0 Query: 1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGS--ASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXAKATPG-----GPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149 MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+ KG A GG LGLVLLRGE V+S+TVEGP XXX G GPGIGRAAGRGI APV+ A GLAGPVRG+GGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGG-------DREDRRTLGLVLLRGEEVISMTVEGPPXXXESRSKAVGAAALAGPGIGRAAGRGIP-PAPVVQAQPGLAGPVRGVGGPAPGMMQP 147
BLAST of NO07G02430 vs. NCBI_GenBank
Match: BAT80740.1 (hypothetical protein VIGAN_03033900 [Vigna angularis var. angularis]) HSP 1 Score: 157.9 bits (398), Expect = 3.600e-35 Identity = 100/155 (64.52%), Postives = 107/155 (69.03%), Query Frame = 0 Query: 1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGS--ASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXAKATPG-----GPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149 MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+ KG A GG LGLVLLRGE V+S+TVEGP XXX G GPGIGRAAGRGI APV+ A GLAGPVRG+GGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGG-------DREDRRTLGLVLLRGEEVISMTVEGPPXXXESRSKAVGAAALAGPGIGRAAGRGIP-PAPVVQAQPGLAGPVRGVGGPAPGMMQP 147
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_007142248.1 (hypothetical protein PHAVU_008G264900g [Phaseolus vulgaris] >ESW14242.1 hypothetical protein PHAVU_008G264900g [Phaseolus vulgaris]) HSP 1 Score: 157.5 bits (397), Expect = 4.700e-35 Identity = 101/155 (65.16%), Postives = 109/155 (70.32%), Query Frame = 0 Query: 1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGS--ASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGP-----XXXXXXAKATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149 MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+ KG A GG LGLVLLRGE V+S+TVEGP XXXX + A GPGIGRAAGRGI APV+ A GLAGPVRG+GGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPADGG-------DREDRRTLGLVLLRGEEVISMTVEGPPXXXXXXXXAVSAAALAGPGIGRAAGRGIP-PAPVIQAQPGLAGPVRGVGGPAPGMMQP 147
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_014505197.1 (small nuclear ribonucleoprotein-associated protein B [Vigna radiata var. radiata]) HSP 1 Score: 157.5 bits (397), Expect = 4.700e-35 Identity = 102/155 (65.81%), Postives = 110/155 (70.97%), Query Frame = 0 Query: 1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGS--ASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGP-----XXXXXXAKATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149 MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+RK+ KG A GG LGLVLLRGE V+S+TVEGP XXXXX + A GPGIGRAAGRGI APV+ A GLAGPVRG+GGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPAEGG-------DREDRRTLGLVLLRGEEVISMTVEGPPXXXXXXXXXVSAAALAGPGIGRAAGRGIP-PAPVVQAQPGLAGPVRGVGGPAPGMMQP 147
BLAST of NO07G02430 vs. NCBI_GenBank
Match: POE70722.1 (small nuclear ribonucleoprotein-associated protein b' [Quercus suber]) HSP 1 Score: 157.5 bits (397), Expect = 4.700e-35 Identity = 98/153 (64.05%), Postives = 108/153 (70.59%), Query Frame = 0 Query: 1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXA-----KATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149 MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+R + S KG + LGLVLLRGE V+S+TVEGP XXXXX A GPGIGRAAGRGI G P++ A GLAGPVRG+GGPA ++M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRNLPSSKGKTA---------PTEDRRTLGLVLLRGEEVISMTVEGPPXXXXXRAKAANAAAMAGPGIGRAAGRGIPTG-PLIQAQPGLAGPVRGVGGPAPNMMQP 143
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_023884273.1 (small nuclear ribonucleoprotein-associated protein B'-like [Quercus suber]) HSP 1 Score: 157.5 bits (397), Expect = 4.700e-35 Identity = 98/153 (64.05%), Postives = 108/153 (70.59%), Query Frame = 0 Query: 1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEGPXXXXXXA-----KATPGGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149 MSMSKSSKML YINYRMRVTIQD R LVG FMAFDRHMNLVLGDCEE+R + S KG + LGLVLLRGE V+S+TVEGP XXXXX A GPGIGRAAGRGI G P++ A GLAGPVRG+GGPA ++M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRNLPSSKGKTA---------PTEDRRTLGLVLLRGEEVISMTVEGPPXXXXXRAKAANAAAMAGPGIGRAAGRGIPTG-PLIQAQPGLAGPVRGVGGPAPNMMQP 143
BLAST of NO07G02430 vs. NCBI_GenBank
Match: XP_004229936.1 (PREDICTED: small nuclear ribonucleoprotein-associated proteins B and B'-like [Solanum lycopersicum]) HSP 1 Score: 157.1 bits (396), Expect = 6.100e-35 Identity = 94/154 (61.04%), Postives = 104/154 (67.53%), Query Frame = 0 Query: 1 MSMSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKSKKGSASGGPXXXXXXXXXXXXMLGLVLLRGENVVSLTVEG-PXXXXXXAKATP-----GGPGIGRAAGRGIAVGAPVMGAPVGLAGPVRGIGGPAQSLMTP 149 MSMSKSSKML YINYRMRVTIQD R L+G FMAFDRHMNLVLGDCEE+RK+ KGS LGLVLLRGE V+S+TVEG P KAT GPGIGRAAGRG+ G P++ A GLAGPVRG+GGPA +M P Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPTKGSKE---------EREDRRTLGLVLLRGEEVISMTVEGPPPPDDSRVKATTAGSAVSGPGIGRAAGRGVPTG-PLVHAQPGLAGPVRGVGGPAPGMMQP 144 The following BLAST results are available for this feature:
BLAST of NO07G02430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO07G02430 ID=NO07G02430|Name=NO07G02430|organism=Nannochloropsis oceanica|type=gene|length=1409bpback to top protein sequence of NO07G02430.1 >NO07G02430.1-protein ID=NO07G02430.1-protein|Name=NO07G02430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=222bpback to top Synonyms
Publications
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