NO07G02280, NO07G02280 (gene) Nannochloropsis oceanica

Overview
NameNO07G02280
Unique NameNO07G02280
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1742
Alignment locationchr7:676852..678593 -

Link to JBrowse

Properties
Property NameValue
DescriptionHistone chaperone
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:676852..678593 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006333chromatin assembly or disassembly
GO:0016043cellular component organization
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR036747ASF1-like_sf
IPR006818Histone_chaperone_ASF1-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Homology
[Close]
BLAST of NO07G02280 vs. NCBI_GenBank
Match: XP_024585459.1 (anti-silencing partial [Plasmopara halstedii] >CEG49090.1 anti-silencing partial [Plasmopara halstedii])

HSP 1 Score: 235.3 bits (599), Expect = 2.000e-58
Identity = 112/153 (73.20%), Postives = 127/153 (83.01%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDW 154
            MA V LTNI VLDNPT+FTNPF FEVTFEC Q LE DLEWK+ YV SAE+  +DQVLEEV+VGPVPVG NKFV QS+PP+   IP+ED +GVTV L+TCSYR +EFVRVGYYVNN+YA+ F  ENPP  VD+ KL RNILADKPRVTRFP+DW
Sbjct:  322 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAQPLEADLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSDPPNPDMIPDEDKVGVTVALVTCSYRGREFVRVGYYVNNDYADPFLLENPPARVDVSKLQRNILADKPRVTRFPIDW 474
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BLAST of NO07G02280 vs. NCBI_GenBank
Match: CCA20191.1 (histone chaperone ASF1like protein putative [Albugo laibachii Nc14])

HSP 1 Score: 235.0 bits (598), Expect = 2.700e-58
Identity = 113/158 (71.52%), Postives = 127/158 (80.38%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDWGLGAG 159
            MA V LTNI VL NPT+FTNPF FEVTFEC   LEDDLEWK+ YV SAE+  +DQVLEEV+VGPVPVG NKFV QSEPP+   IP+ D IGVTV+L+TCSYR +EFVRVGYYVNN+YA+    ENPP  VD+ KL RNILADKPRVTRFP+DW  G G
Sbjct:    1 MAFVTLTNITVLANPTAFTNPFQFEVTFECAHALEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPNPDMIPDCDKIGVTVVLLTCSYRSKEFVRVGYYVNNDYADPLMLENPPPTVDVSKLQRNILADKPRVTRFPIDWSSGLG 158
[Close]
BLAST of NO07G02280 vs. NCBI_GenBank
Match: XP_008613096.1 (histone chaperone ASF1 [Saprolegnia diclina VS20] >EQC33456.1 histone chaperone ASF1 [Saprolegnia diclina VS20])

HSP 1 Score: 235.0 bits (598), Expect = 2.700e-58
Identity = 111/153 (72.55%), Postives = 128/153 (83.66%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDW 154
            MA V LTNI VLDNPT+FTNPF FEVTFEC   LEDDLEWK+ YV SAE+  +DQVLEEV+VGPVPVG NKFV QSEPP+ S IP+ED IGVTV+L+TC+Y+ +EFVRVGYYVNN+Y++    ENPP  VD+ KL RNILADKPRVTRFP+DW
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPNPSLIPDEDKIGVTVVLVTCAYKGREFVRVGYYVNNDYSDPALIENPPASVDITKLARNILADKPRVTRFPIDW 153
[Close]
BLAST of NO07G02280 vs. NCBI_GenBank
Match: XP_008892914.1 (hypothetical protein PPTG_01389 [Phytophthora parasitica INRA-310] >ETN21083.1 hypothetical protein PPTG_01389 [Phytophthora parasitica INRA-310])

HSP 1 Score: 235.0 bits (598), Expect = 2.700e-58
Identity = 115/170 (67.65%), Postives = 131/170 (77.06%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDWGLGAGVEGGQQPQVTEE 171
            MA V LTNI VLDNPT+FTNPF FEVTFEC Q LE DLEWK+ YV  AE+  +DQVLEEV+VGPVPVG NKFV QS+PP+   IP+ED +GVTV L+TCSYR +EFVRVGYYVNN+YA+ F  ENPP  VD+ KL RNILADKPRVTRFP+DW       G Q P   E+
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAQPLEADLEWKITYVGCAEDESRDQVLEEVLVGPVPVGTNKFVFQSDPPNPDMIPDEDKVGVTVALVTCSYRGREFVRVGYYVNNDYADPFLLENPPARVDVSKLQRNILADKPRVTRFPIDW----SPAGAQDPNAMED 166
[Close]
BLAST of NO07G02280 vs. NCBI_GenBank
Match: OQS01262.1 (histone chaperone ASF1-like protein [Achlya hypogyna])

HSP 1 Score: 234.6 bits (597), Expect = 3.500e-58
Identity = 111/153 (72.55%), Postives = 127/153 (83.01%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDW 154
            MA V LTNI VLDNPT+FTNPF FEVTFEC   LEDDLEWK+ YV SAE+  +DQVLEEV+VGPVPVG NKFV QSEPP+ + IP+ED IGVTV+L+TCSY+ +EFVRVGYYVNN+Y + F  E PP  VD+ KL RNILADKPRVTRFP+DW
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPNPALIPDEDKIGVTVVLVTCSYKSREFVRVGYYVNNDYTDPFLLEAPPATVDITKLQRNILADKPRVTRFPIDW 153
[Close]
BLAST of NO07G02280 vs. NCBI_GenBank
Match: CCI44975.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 233.0 bits (593), Expect = 1.000e-57
Identity = 116/182 (63.74%), Postives = 132/182 (72.53%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDWGLGAGVEGGQQPQVTEEEAAAEGVVDFDA 183
            MA V LTNI VL NPT+FTNPF FEVTFEC   LEDDLEWK+ YV SAE+  +DQVLEEV+VGPVPVG NKFV QSEPP+   IP+ D IGVTV+L+TCSYR +EFVRVGYYVNN+YA+    ENPP  VD+ KL RNILADKPRVTRFP+DW  G   +       T     A   +  DA
Sbjct:    1 MAFVTLTNITVLANPTAFTNPFQFEVTFECAHALEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPNPEMIPDCDKIGVTVVLLTCSYRSKEFVRVGYYVNNDYADPLMLENPPSTVDVSKLQRNILADKPRVTRFPIDWSSGVPEDNMNCVDPTGISQGANSTIKLDA 182
[Close]
BLAST of NO07G02280 vs. NCBI_GenBank
Match: XP_012204819.1 (hypothetical protein SPRG_10374 [Saprolegnia parasitica CBS 223.65] >KDO24559.1 hypothetical protein SPRG_10374 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 233.0 bits (593), Expect = 1.000e-57
Identity = 112/179 (62.57%), Postives = 137/179 (76.54%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDWGLGAGVEGGQQPQVTEEEAAAEGVVD 180
            MA V LTNI VLDNPT+FTNPF FEVTFEC   LEDDLEWK+ YV SAE+  +DQVLEEV+VGPVPVG NKFV QSEPP+ + IP+ED IGVTV+L+TC+Y+ +EFVRVGYYVNN+Y++    ENPP  VD+ KL RNILADKPRVTRFP+DW   A ++        ++    E +++
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPNPALIPDEDKIGVTVVLVTCAYKGREFVRVGYYVNNDYSDPALVENPPANVDITKLARNILADKPRVTRFPIDWAPQAQMQAEDMAMTNDDLLNEEDLIN 179
[Close]
BLAST of NO07G02280 vs. NCBI_GenBank
Match: XP_012205338.1 (hypothetical protein SPRG_10716 [Saprolegnia parasitica CBS 223.65] >KDO24019.1 hypothetical protein SPRG_10716 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 232.6 bits (592), Expect = 1.300e-57
Identity = 112/179 (62.57%), Postives = 136/179 (75.98%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDWGLGAGVEGGQQPQVTEEEAAAEGVVD 180
            MA V LTNI VLDNPT+FTNPF FEVTFEC   LEDDLEWK+ YV SAE+  +DQVLEEV+VGPVPVG NKFV QSEPP+ + IP+ED IGVTV+L+TC+Y+ +EFVRVGYYVNN+Y++    ENPP  VD+ KL RNILADKPRVTRFP+DW   A  +        ++    E +++
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPNPALIPDEDKIGVTVVLVTCAYKGREFVRVGYYVNNDYSDPALVENPPANVDITKLARNILADKPRVTRFPIDWAPQAQTQAEDMAMTNDDLLNEEDLIN 179
[Close]
BLAST of NO07G02280 vs. NCBI_GenBank
Match: OQS02741.1 (histone chaperone ASF1 [Thraustotheca clavata])

HSP 1 Score: 232.6 bits (592), Expect = 1.300e-57
Identity = 110/153 (71.90%), Postives = 127/153 (83.01%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDW 154
            MA V LTNI VLDNPT+FTNPF FEVTFEC   LEDDLEWK+ YV SAE+  +DQVLEEV+VGPVPVG NKFV QSEPP+ + IPEED IGVTV+L+TCSY+ +EFVRVGYY+NN+Y + F  ENPP  VD+ KL RNILA+KPRVTRF +DW
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAHPLEDDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSEPPNPALIPEEDKIGVTVVLVTCSYKSREFVRVGYYINNDYTDPFLLENPPPIVDITKLQRNILAEKPRVTRFTIDW 153
[Close]
BLAST of NO07G02280 vs. NCBI_GenBank
Match: KUF95296.1 (Carboxypeptidase B2 [Phytophthora nicotianae])

HSP 1 Score: 227.3 bits (578), Expect = 5.600e-56
Identity = 112/163 (68.71%), Postives = 127/163 (77.91%), Query Frame = 0 
Query:    1 MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELED----------DLEWKVLYVSSAENAEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCSYREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFPVDW 154
            MA V LTNI VLDNPT+FTNPF FEVTFEC Q LE           DLEWK+ YV SAE+  +DQVLEEV+VGPVPVG NKFV QS+PP+   IP+ED +GVTV L+TCSYR +EFVRVGYYVNN+YA+ F  ENPP  VD+ KL RNILADKPRVTRFP+DW
Sbjct:    1 MAYVTLTNITVLDNPTAFTNPFQFEVTFECAQPLEAGALINPLIAVDLEWKITYVGSAEDESRDQVLEEVLVGPVPVGTNKFVFQSDPPNPDMIPDEDKVGVTVALVTCSYRGREFVRVGYYVNNDYADPFLLENPPARVDVSKLQRNILADKPRVTRFPIDW 163
The following BLAST results are available for this feature:
BLAST of NO07G02280 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_024585459.12.000e-5873.20anti-silencing partial [Plasmopara halstedii] >CEG... [more]
CCA20191.12.700e-5871.52histone chaperone ASF1like protein putative [Albug... [more]
XP_008613096.12.700e-5872.55histone chaperone ASF1 [Saprolegnia diclina VS20] ... [more]
XP_008892914.12.700e-5867.65hypothetical protein PPTG_01389 [Phytophthora para... [more]
OQS01262.13.500e-5872.55histone chaperone ASF1-like protein [Achlya hypogy... [more]
CCI44975.11.000e-5763.74unnamed protein product [Albugo candida][more]
XP_012204819.11.000e-5762.57hypothetical protein SPRG_10374 [Saprolegnia paras... [more]
XP_012205338.11.300e-5762.57hypothetical protein SPRG_10716 [Saprolegnia paras... [more]
OQS02741.11.300e-5771.90histone chaperone ASF1 [Thraustotheca clavata][more]
KUF95296.15.600e-5668.71Carboxypeptidase B2 [Phytophthora nicotianae][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL096nonsL096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000652NSK000652Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02280.1NO07G02280.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|332244gene_2554Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g77gene3389Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02280.1NO07G02280.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02280 ID=NO07G02280|Name=NO07G02280|organism=Nannochloropsis oceanica|type=gene|length=1742bp
CGGGAAGCCACCAAAGGCCTTCCCGCGGCATGCTTTGCCAGCGGGTAGTC
TGGTCTGTAACTCATGGCCTTGCCTTCTCATCCTTTATTTGAGACCAATA
AACAACGGTCATCTCCCTCGCGCTCGCCACCGTGTGTATCAGACGTCCCA
TTGCGAGTGTGTTACCTTCTCTTTCCTTTGCCTATGGCCTTAATACTGCC
CGCCAAGAGTGCAAGCCCGCCCCCCCCCTTGCCCCATAACCACCACGACA
ATCCCCAGGGCTTTGTCCTACTCCGCCACTATGGTAGGTCCTCGTTCTCG
CCACCCAAGTCACCATTCCCACCGTTCCTTTCCCGCACAGTGGCTTTTTC
TTCCCTCCACACATAATGGCGCTCGTAAACTTGACCAACATCGTGGTGCT
GGACAACCCCACCAGCTTCACGAACCCCTTCACATTCGAGGTCACCTTTG
AGTGCGTGCAAGAGCTCGAAGACGgtatgtggcttggtggtatgtgtgtg
tgtcagaggggaggggggttgtaatattttgagtagagacaatctcgtgg
gaacggagggtcttccttcagggcaggacttttccctggttcccttcgag
cccacgcgtgtgcaaccctctctctatccagttgtatctcttttaagcaa
gcactacatgtcggttctgccgctttcaccatcttgtcctcatttcctac
ccacccaaccctcagACTTGGAATGGAAGGTGCTCTACGTTTCATCGGCG
GAAAATGCGGAGCAGGACCAGGTACTGGAGGAAGTGATGGTCGGCCCCGT
GCCCGTGGGTGTGAACAAATTCGTGCTGCAATCGGAGCCCCCGGACGTGA
GTCGTATTCCCGAGGAAGACATCATCGGCGTGACCGTCATCCTCATAACC
TGCTCCTACCGCGAGCAAGAATTTGTCCGCGTCGGCTACTACGTCAACAA
CGAGTACGCGGAGGCATTTGATCCTGAAAACCCTCCACGGCCCGTGGATC
TGGGAAAGCTGGTGCGTAACATTCTTGCTGACAAGCCACGTGTTACGCGC
TTCCCGGTCGACTGGGGCCTGGGTGCGGGGGTGGAAGGCGGGCAACAACC
GCAGGTCACGGAGGAGGAGGCGGCCGCGGAGGGGGTGGTGGATTTCGACG
CGCTGGACCAGCAGGCTGGGGATGAGGACGAGGAAGAGGAAGGCGGGGAG
GACGGAGACGGGGACGAGGATCGGGACGTGGGGGAGGAGGACAGTGACGA
GCCCGGGGGGTTGCATGAGGGGGGGGCGATGGACATGGAGATGGTGTCGC
CCGCTTTTAAAGGCTCGGTGGCACGGGGAGACAGCATGTCAGAGTCCCCC
CCTCTTTACGCGGCTTCATCGTGACTTATTTGTCGCTGAAGCTGAAATGT
ACGAGAGCGAAGAGGAAATGATTAGGAGAACGAAGAGAGAAGAGATGAAA
AGTAGTGTTGGGACGAGAGGAAAGCTGAAGATGATGTGGTCGGCGTGTTT
ATATCAGGGAGAGAAGAAGAAACCGAAAGTCAGAAGGAAAAAAGGGTAAA
GAAATGTGATGGGATAGTGTGACAAGAAGGAAAGATGAAGGACATTTGTG
TGCGGATCAGACAAGCAAGAAGAGTGCAGGAGATGGGAGAGGCACGTGCC
GTACCCGAAATTGCAGCTCATGACAACGAACGGCTCACCCATCAAGAGTA
AAGAATAGAACCGTGTGTGTAATTTCTTACCACATCTTAAAC
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protein sequence of NO07G02280.1

>NO07G02280.1-protein ID=NO07G02280.1-protein|Name=NO07G02280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MALVNLTNIVVLDNPTSFTNPFTFEVTFECVQELEDDLEWKVLYVSSAEN
AEQDQVLEEVMVGPVPVGVNKFVLQSEPPDVSRIPEEDIIGVTVILITCS
YREQEFVRVGYYVNNEYAEAFDPENPPRPVDLGKLVRNILADKPRVTRFP
VDWGLGAGVEGGQQPQVTEEEAAAEGVVDFDALDQQAGDEDEEEEGGEDG
DGDEDRDVGEEDSDEPGGLHEGGAMDMEMVSPAFKGSVARGDSMSESPPL
YAASS*
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Synonyms
Publications