NO07G02250, NO07G02250 (gene) Nannochloropsis oceanica

Overview
NameNO07G02250
Unique NameNO07G02250
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1545
Alignment locationchr7:671279..672823 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:671279..672823 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
[Close]
BLAST of NO07G02250 vs. NCBI_GenBank
Match: EWM27170.1 (hypothetical protein Naga_100010g82 [Nannochloropsis gaditana])

HSP 1 Score: 67.4 bits (163), Expect = 1.300e-7
Identity = 42/112 (37.50%), Postives = 53/112 (47.32%), Query Frame = 0 
Query:  154 RLIHREELVTCATINYGHDLEPESITRGLDRARFVTGLETIDLATVTVDLEDHRTPRGQPLLESLRRMMECLDRLAXXXXXXXXXXXXXXXXXXXXXPPLQHYAIELRLPFY 266
            RL+ REELVTCATIN GHDL+  SI R L+R R                  D  TPRG+ LLE+L+ +ME  D +                      PP+Q Y  +  +PFY
Sbjct:    5 RLVQREELVTCATINRGHDLDIGSIARSLERPR----------------ASDSHTPRGRALLETLKSVMEYFDHIG----------SPPKPECYVYPPPIQCYGKDTCVPFY 90
The following BLAST results are available for this feature:
BLAST of NO07G02250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27170.11.300e-737.50hypothetical protein Naga_100010g82 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL096nonsL096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02250.1NO07G02250.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580742gene_2551Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g82gene3394Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02250.1NO07G02250.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02250 ID=NO07G02250|Name=NO07G02250|organism=Nannochloropsis oceanica|type=gene|length=1545bp
ATGTGGGCTGGTCGTGGTCTTCAAGGCACCTTGAGACGGAAGTTGCTCTC
GCCCTCGTCCTCGCCCCCAGTCCTCTTCCTCCTCCCCCTCCTGCGATGCA
GCCACACCATTCCGGGTCGGGCCACACGGAGGGGCTGTCATGGTTTTTAT
GACCGTTTGCAAAAAGATCAGGAGGAGGAGGATCAGATGAAAGGCCAATC
AAAAGGTGGGGGTGAGTCCAACCCCTCCAGTCGAATGCTCACTGCAGTCC
TTCCCAAAGCGGGCTGGGAAGTGGGGGCCTTGTCGTTCGGACTTCCTAGA
AGACCCCATGGCTTGGGAGATGCCCTCGAGACAACACTTATGGCTGCTGT
GGTTATAGCAAAGCAGAATCTCATCCAAGTGTATGACGCGAGCAGTCATT
CGAGCGAAGAGATTGGCTTGACATCCTGTCGTGCCCTCCACACACTGATT
CAGACCCGCAGgtacgcaatacgggcgcaaaaggcagatttctaagtctg
catgagtctctttgacttttcaagtgacctattctgccttttctcgccat
caatcctcgatacctcttctaaacatctcttttatatggatccatctatt
ttcgtgcttatgaattcactcagGCTCATACACCGCGAAGAATTGGTGAC
CTGTGCGACCATTAACTATGGTCATGACCTTGAGCCGGAGTCCATTACAA
GAGGATTAGACAGAGCGCGCTTTGTGACAGGGTTGGAAACTATAGATCTG
GCCACGGTTACTGTAGATCTAGAGGACCACCGCACACCACGGGGCCAACC
GTTACTAGAAAGCTTGCGGCGCATGATGGAATGCTTGGACAGATTGGCGG
AGCAACCTTCATCTTCTCCCTCCTCCCCCTCCTCTTCTTCTTCTTTCTCC
TCCTCCTCGCTTCCTCCTCTTCAACATTATGCGATTGAGCTTCGCCTACC
GTTCTACATGCAGCATAAAAACCACCAAGAATTGACCGAAGAGGAGGCTC
CTGGATATAAAAATGCTGGCATGGCCTTGACAACAGCCCAGCAAGAAGAG
CTACTACTACCGAGAATCGTGGAGGAGGCGGCTCTGGTAGGAAGAAGCAA
ATTGGCTATGGTCACGTACCCCATACAACTGACAGGAAAGCATTTGGTGA
CTTTACCTCTCATGCAACCTGAAAGCAAGGCAGGGCGACAAGGTCAAATG
CGTCCAGTGTCCCGCCTGGCCCGTGGCGCGCTGGTGGGATGTACTGATGC
TGGCGAATCGCTTTCTTTGTCGTCCGAGTTACTCCCGCCTGACACAGTGA
CTCGGCTCAACGCCGCGCTGAATGGAATGTCCCCGGCCCTCCGCAGTAGC
CCACTTCTCGAGGCAAAAGTAATACGAAGCGTGCTAGCTGCCGAGATAGA
TATTGTGCAGCTCGATGTCGACGACATGCTTGGTCTTTTGCCCAGATTTA
CTGAAACTGGAGGATTGTTAGTGCGGCGCAAGGATCGCCTACAATTTCAG
CAATGTAGGCGAGTTTTCGATGAGTTTTATCTCCCTGCTTTATAA
back to top

protein sequence of NO07G02250.1

>NO07G02250.1-protein ID=NO07G02250.1-protein|Name=NO07G02250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MWAGRGLQGTLRRKLLSPSSSPPVLFLLPLLRCSHTIPGRATRRGCHGFY
DRLQKDQEEEDQMKGQSKGGGESNPSSRMLTAVLPKAGWEVGALSFGLPR
RPHGLGDALETTLMAAVVIAKQNLIQVYDASSHSSEEIGLTSCRALHTLI
QTRRLIHREELVTCATINYGHDLEPESITRGLDRARFVTGLETIDLATVT
VDLEDHRTPRGQPLLESLRRMMECLDRLAEQPSSSPSSPSSSSSFSSSSL
PPLQHYAIELRLPFYMQHKNHQELTEEEAPGYKNAGMALTTAQQEELLLP
RIVEEAALVGRSKLAMVTYPIQLTGKHLVTLPLMQPESKAGRQGQMRPVS
RLARGALVGCTDAGESLSLSSELLPPDTVTRLNAALNGMSPALRSSPLLE
AKVIRSVLAAEIDIVQLDVDDMLGLLPRFTETGGLLVRRKDRLQFQQCRR
VFDEFYLPAL*
back to top
Synonyms
Publications