NO07G02240, NO07G02240 (gene) Nannochloropsis oceanica

Overview
NameNO07G02240
Unique NameNO07G02240
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1404
Alignment locationchr7:669338..670741 +

Link to JBrowse

Properties
Property NameValue
DescriptionArmadillo-like helical
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:669338..670741 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
Homology
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BLAST of NO07G02240 vs. NCBI_GenBank
Match: EWM27223.1 (Armadillo-like helical [Nannochloropsis gaditana])

HSP 1 Score: 501.5 bits (1290), Expect = 2.800e-138
Identity = 266/449 (59.24%), Postives = 324/449 (72.16%), Query Frame = 0 
Query:   21 PEAEFDLEELAPTMRSVEILRGPASVPSLPTHYDRHQGAYLYRVGAGPSGSSGGGNCGSSLS-HLVVPTHPKTQQNYAAPTLRPASSISSSAATSMTEKVESLAAPKMPFEMALFPLERCHYYTNKSAEDLHTDIEAALQEKGVVFNFVPAKFKFACEYRTGVNMVRFVCRAYFVPEDGRTVVEFQRRAGCCIVCAKVVDAVRSTLLARECNAEAAPIAIRAFQPKPLYITACLLHEKSQAEAP---SRQLAQQCTLMDDLRRCMAEGKDAVLTDFAVVLVPLSQLAPQRLLGDPSNAELLAALGQHVNVPNARLSALVCLANLAAICFPVSVESIFSLPSLRRCASSDPDNDVTDDAAANEPGPSVGEVCAWFDGVLLTLVRTLDAESEEDGNPHFRREAARALLHLTKESFARTMAVRGALEKCAAAGPVGKDRLLDSYVQGALRHM 466
            PEAEFD+EEL P  RS+ +  GP  V +LP+HY+RHQGAYLYR G G  G+ G G+     +  L +P  P+ Q   A   L  +S + S+ A  M      L AP +PFE +LFPLERCHYYTNK   +L +DI+ AL+EK VVF FVP KFKF+CEYRTGVN VRFVCRAYFVPEDGRTVVEFQRR+GCCIVCAKVVDAVRSTLLARECN+EA PI+IR F+PKPL  +ACL+ E+ ++ A    +RQ AQQC LM DL+ C+A+G+D VLTDFA VL+PLSQLAP+ LLG PS+AELLAALG+H  + + RLSALVCLANLAA CFP S E + S+P LRR  S+D ++D  D     EP PS G+VCAWF+ VL T++  L ++     + H RREAARAL HL+KESFART A R  LE C  +G   +D +L  YV+GAL HM
Sbjct:   29 PEAEFDIEELGPATRSIGVSSGPTPVQTLPSHYNRHQGAYLYRDGVGTGGNDGDGDKHVECTPPLTIPFMPQKQHQRADYLL--SSKLRSNDAVDMIP--AKLVAPNLPFETSLFPLERCHYYTNKPTPELFSDIQVALKEKAVVFKFVPGKFKFSCEYRTGVNNVRFVCRAYFVPEDGRTVVEFQRRSGCCIVCAKVVDAVRSTLLARECNSEALPISIRPFKPKPLAASACLVQEEGESSAKVERARQEAQQCKLMRDLQDCLAQGRDDVLTDFAKVLIPLSQLAPEHLLGQPSHAELLAALGRH-EIQSTRLSALVCLANLAAACFPQSGEGLSSVPFLRRGVSTDTEDDNPDVETGEEPAPSAGDVCAWFEDVLETIINALQSKFGPRSDAHVRREAARALWHLSKESFARTAAARQVLESC-VSGDAEEDHVLQEYVRGALEHM 471
The following BLAST results are available for this feature:
BLAST of NO07G02240 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27223.12.800e-13859.24Armadillo-like helical [Nannochloropsis gaditana][more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL096nonsL096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000648NSK000648Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02240.1NO07G02240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580739gene_2550Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g83gene3395Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02240.1NO07G02240.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02240 ID=NO07G02240|Name=NO07G02240|organism=Nannochloropsis oceanica|type=gene|length=1404bp
ATGAGTGACCACACGCCGTGCACGCCGGGCCCTGAGAACGAGACGCAGCA
GCATGAGCACCCGGAAGCCGAATTTGACCTGGAGGAATTGGCCCCCACCA
TGCGCTCCGTAGAGATATTGCGCGGCCCCGCCTCGGTGCCCAGCCTGCCC
ACTCACTATGACCGTCATCAGGGTGCCTACTTGTATCGCGTAGGGGCGGG
ACCCAGCGGTAGCTCTGGTGGTGGTAATTGTGGGTCATCTTTGTCTCACT
TAGTCGTCCCCACGCACCCCAAGACGCAGCAAAATTATGCGGCCCCGACG
CTAAGGCCCGCGTCTTCAATATCATCGTCGGCGGCGACATCCATGACCGA
GAAAGTCGAGTCGTTGGCCGCACCTAAGATGCCATTTGAGATGGCGCTCT
TTCCCCTGGAGAGGTGCCACTACTACACCAACAAGTCGGCCGAAGATTTG
CACACCGACATTGAGGCAGCGCTTCAAGAGAAGGGCGTGGTTTTCAATTT
TGTGCCTGCAAAGTTCAAATTTGCCTGTGAGTATCGCACGGGCGTGAACA
TGGTGCGGTTTGTCTGTCGGGCATATTTTGTGCCCGAGGACGGTCGGACA
GTAGTGGAATTTCAACGCCGCGCGGGTTGCTGTATCGTCTGCGCGAAGGT
GGTGGACGCGGTGCGCTCGACGCTGCTGGCACGGGAATGCAACGCTGAGG
CAGCACCCATAGCCATTCGGGCCTTCCAGCCCAAGCCTTTGTATATAACT
GCATGCCTGCTCCACGAGAAAAGCCAGGCGGAGGCGCCGTCGCGTCAATT
AGCGCAGCAATGCACTTTGATGGACGATTTACGAAGGTGTATGGCGGAAG
GCAAGGACGCAGTCTTGACGGACTTTGCCGTGGTTCTAGTCCCACTTTCG
CAGCTCGCCCCGCAGCGATTACTGGGGGATCCAAGCAATGCTGAGCTTTT
GGCTGCACTAGGACAGCACGTGAATGTGCCAAACGCGCGCCTCAGCGCCT
TGGTCTGTTTGGCAAACTTGGCGGCGATCTGCTTCCCTGTAAGTGTGGAG
AGTATATTCAGCTTGCCATCCCTGCGAAGGTGCGCCAGCAGTGACCCGGA
TAACGACGTGACAGATGATGCGGCCGCGAACGAGCCCGGCCCAAGCGTGG
GCGAGGTATGTGCCTGGTTCGATGGCGTGCTCCTGACACTTGTGAGAACG
TTGGACGCAGAGTCAGAGGAGGATGGGAATCCGCATTTTCGCCGGGAGGC
GGCTCGCGCGCTTCTCCACTTAACGAAGGAGTCATTTGCGCGCACGATGG
CTGTGCGGGGGGCTTTGGAAAAGTGTGCTGCTGCTGGACCGGTGGGGAAG
GACCGCCTTTTGGATAGCTATGTCCAAGGAGCCCTGCGGCACATGGGGGC
GTGA
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protein sequence of NO07G02240.1

>NO07G02240.1-protein ID=NO07G02240.1-protein|Name=NO07G02240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MSDHTPCTPGPENETQQHEHPEAEFDLEELAPTMRSVEILRGPASVPSLP
THYDRHQGAYLYRVGAGPSGSSGGGNCGSSLSHLVVPTHPKTQQNYAAPT
LRPASSISSSAATSMTEKVESLAAPKMPFEMALFPLERCHYYTNKSAEDL
HTDIEAALQEKGVVFNFVPAKFKFACEYRTGVNMVRFVCRAYFVPEDGRT
VVEFQRRAGCCIVCAKVVDAVRSTLLARECNAEAAPIAIRAFQPKPLYIT
ACLLHEKSQAEAPSRQLAQQCTLMDDLRRCMAEGKDAVLTDFAVVLVPLS
QLAPQRLLGDPSNAELLAALGQHVNVPNARLSALVCLANLAAICFPVSVE
SIFSLPSLRRCASSDPDNDVTDDAAANEPGPSVGEVCAWFDGVLLTLVRT
LDAESEEDGNPHFRREAARALLHLTKESFARTMAVRGALEKCAAAGPVGK
DRLLDSYVQGALRHMGA*
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Synonyms
Publications