NO07G02210, NO07G02210 (gene) Nannochloropsis oceanica

Overview
NameNO07G02210
Unique NameNO07G02210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length672
Alignment locationchr7:663900..664571 -

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Properties
Property NameValue
DescriptionEf-1 guanine nucleotide exchange domain-containing
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:663900..664571 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR036219eEF-1beta-like_sf
IPR036282Glutathione-S-Trfase_C_sf
IPR014038Transl_elong_fac_EF1B_bsu/dsu
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Homology
[Close]
BLAST of NO07G02210 vs. NCBI_GenBank
Match: EWM27134.1 (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 275.4 bits (703), Expect = 1.600e-70
Identity = 182/224 (81.25%), Postives = 199/224 (88.84%), Query Frame = 0 
Query:    1 MAPKFDFSKGIGDLEKHLSTRSYVEGYSFSSADSSTFAALPSVPSAASNPNAFRWYLHIAAISGLKTVL-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVDKIEAMDDQVQSVDINSFNKL 224
            M  KFDFSKG GDLEKHLSTRSY+EG+SFS+ADSSTF+ALPSVP A+S+PNA+RWYLHIA+++GLK +L G     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  T+SRAEQVAAMKA         KKRDRSQIVLEVKPTDTEVNLDELY TIK+EI PSGLTWGEGYNKSPVA+GIFKLIISMVV+DDEVSIDDVV+KIEAM+D VQSVDINSFNKL
Sbjct:    1 MPSKFDFSKGFGDLEKHLSTRSYIEGFSFSAADSSTFSALPSVPVASSHPNAYRWYLHIASLTGLKKILGGDGRAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMSRAEQVAAMKAXXXXXXXXXKKRDRSQIVLEVKPTDTEVNLDELYKTIKEEICPSGLTWGEGYNKSPVAFGIFKLIISMVVYDDEVSIDDVVEKIEAMEDSVQSVDINSFNKL 224
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BLAST of NO07G02210 vs. NCBI_GenBank
Match: EWM23852.1 (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana])

HSP 1 Score: 172.9 bits (437), Expect = 1.100e-39
Identity = 92/117 (78.63%), Postives = 100/117 (85.47%), Query Frame = 0 
Query:  107 KPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVDKIEAMDDQVQSVDINSFNKL 224
            K T+SRAEQVAAMKAE           DRSQIVLEVKPTDT+V+LD LY TIKKE+ P GLTWGEGYNK+PVA+GIFKLIIS+VVFDDEVSIDDVVDKIEAM+D VQSVDINSFNKL
Sbjct:   73 KATMSRAEQVAAMKAEXXXXXXXXXXXDRSQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 189
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BLAST of NO07G02210 vs. NCBI_GenBank
Match: XP_005853780.1 (ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana CCMP526] >EKU22580.1 ef-1 guanine nucleotide exchange domain-containing [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 161.8 bits (408), Expect = 2.500e-36
Identity = 87/117 (74.36%), Postives = 95/117 (81.20%), Query Frame = 0 
Query:  107 KPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVDKIEAMDDQVQSVDINSFNKL 224
            K T+SRAEQVAAMK                QIVLEVKPTDT+V+LD LY TIKKE+ P GLTWGEGYNK+PVA+GIFKLIIS+VVFDDEVSIDDVVDKIEAM+D VQSVDINSFNKL
Sbjct:   52 KATMSRAEQVAAMKXXXXXXXXXXXXXXXXQIVLEVKPTDTDVDLDALYKTIKKEVCPPGLTWGEGYNKAPVAFGIFKLIISLVVFDDEVSIDDVVDKIEAMEDSVQSVDINSFNKL 168
[Close]
BLAST of NO07G02210 vs. NCBI_GenBank
Match: CBN77382.1 (eukaryotic elongation factor-1 B beta [Ectocarpus siliculosus])

HSP 1 Score: 144.4 bits (363), Expect = 4.100e-31
Identity = 131/238 (55.04%), Postives = 163/238 (68.49%), Query Frame = 0 
Query:    1 MAPKFDFS--KGIGDLEKHLSTRSYVEGYSFSSADSSTFAALPSVPSAASNPNAFRWYLHIAAISGLKTV------------LGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYMTI-KKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVDKIEAMDDQVQSVDINSFNKL 224
            MAPKFD S  KG+     ++S +SYVEGYS+S AD+  FA    VP     P+A+RWY+HIAAI G++++              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    SRAE++A  KA K+AK    KK DRSQIV EVKP DTE +L  L+  I K EI   GL WGE +   PVA+G+ KL++S VV DD+V ++D+ D IE  +D+VQSVD+ + N+L
Sbjct:    1 MAPKFDLSTPKGLMPFNGYISAKSYVEGYSYSQADADMFATCSGVPDKTKAPHAYRWYIHIAAIKGVRSLSLAPSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEKSRAEKMAEAKAAKDAK----KKIDRSQIVFEVKPWDTETDLKGLFAKICKTEI--EGLVWGEAHKLVPVAFGVKKLVLSCVVEDDKVGVEDITDVIEGFEDEVQSVDMTTMNRL 232
[Close]
BLAST of NO07G02210 vs. NCBI_GenBank
Match: POM64128.1 (EF-1 guanine nucleotide exchange domain containing hypothetical protein [Phytophthora palmivora var. palmivora] >POM69626.1 EF-1 guanine nucleotide exchange domain containing hypothetical protein [Phytophthora palmivora var. palmivora])

HSP 1 Score: 124.0 bits (310), Expect = 5.800e-25
Identity = 115/218 (52.75%), Postives = 140/218 (64.22%), Query Frame = 0 
Query:    6 DFSKGIGDLEKHLSTRSYVEGYSFSSADSSTFAALPSVPSAASNPNAFRWYLHIAAISGLKTVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVDKIEAMDDQVQSVDINSFNKL 224
            D   G+  L   L+ RSY+EGY FSSAD+S F    +VP AA   N +RWY+HIAA  GL+ +L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           +RSQ+V+EVKP + E +L+EL   I K +   GLTWGEG+   PVA+GI KL++  V+ DD V +DD+ D IE  +D VQSVD+ S NKL
Sbjct:    9 DQDAGLKKLNGFLTNRSYIEGYKFSSADASLFQQFSAVPDAAKYANVYRWYVHIAAKLGLRAILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSQVVIEVKPWEAETDLEELAAKI-KALPVEGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITDAIEGFEDYVQSVDVASMNKL 225
[Close]
BLAST of NO07G02210 vs. NCBI_GenBank
Match: XP_002908620.1 (EF-1 guanine nucleotide exchange domain-containing protein, putative [Phytophthora infestans T30-4] >EEY61703.1 EF-1 guanine nucleotide exchange domain-containing protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 117.9 bits (294), Expect = 4.200e-23
Identity = 114/220 (51.82%), Postives = 141/220 (64.09%), Query Frame = 0 
Query:    6 DFSKGIGDLEKHLSTRSYVEGYSFSSADSSTFAALPSVPSAASNPNAFRWYLHIAAISGLKTVL--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVDKIEAMDDQVQSVDINSFNKL 224
            D   G+  L   L+ RSY+EGY FSSAD++ F    +VP AA   N +RWY+HIAA  GL+ +L   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           +RSQ+V+EVKP + E +L+EL + I K +   GLTWGEG+   PVA+GI KL++  V+ DD V +DD+ D IE  +D VQSVD+ S NKL
Sbjct:    9 DQDAGLKKLNGFLTNRSYIEGYKFSSADAALFHKFSAVPDAAKFANVYRWYVHIAAKLGLRAILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSQVVIEVKPWEAETDLEELAVKI-KALPVEGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITDAIEGFEDYVQSVDVASMNKL 227
[Close]
BLAST of NO07G02210 vs. NCBI_GenBank
Match: ETP44969.1 (hypothetical protein F442_08510 [Phytophthora parasitica P10297])

HSP 1 Score: 117.1 bits (292), Expect = 7.100e-23
Identity = 115/220 (52.27%), Postives = 139/220 (63.18%), Query Frame = 0 
Query:    6 DFSKGIGDLEKHLSTRSYVEGYSFSSADSSTFAALPSVPSAASNPNAFRWYLHIAAISGLKTVL--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVDKIEAMDDQVQSVDINSFNKL 224
            D   G+  L   L+ RSY+EGY FSSAD+  F    +VP AA   N +RWY+HIAA  GL+ +L   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           +RSQ+V+EVKP + E +L+EL   I K +   GLTWGEG+   PVA+GI KL++  V+ DD V +DD+ D IE  +D VQSVDI S NKL
Sbjct:    9 DQDAGLKKLNGFLTNRSYIEGYKFSSADADLFHKFSAVPDAAKFANVYRWYVHIAAKLGLRAILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSQVVIEVKPWEAETDLEELAAKI-KALPVEGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITDAIEGFEDYVQSVDIASMNKL 227
[Close]
BLAST of NO07G02210 vs. NCBI_GenBank
Match: XP_024584060.1 (ef-1 guanine nucleotide exchange domain-containing [Plasmopara halstedii] >CEG47691.1 ef-1 guanine nucleotide exchange domain-containing [Plasmopara halstedii])

HSP 1 Score: 117.1 bits (292), Expect = 7.100e-23
Identity = 112/218 (51.38%), Postives = 142/218 (65.14%), Query Frame = 0 
Query:    6 DFSKGIGDLEKHLSTRSYVEGYSFSSADSSTFAALPSVPSAASNPNAFRWYLHIAAISGLKTVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVDKIEAMDDQVQSVDINSFNKL 224
            D   G+  L   L++RSY+EG+ FSSAD+  F    SVP AA   N +RWY+H+AA  GL+ +L XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           +RSQ+V+EVKP + E +L+EL + I K +   GL+WGEG+   PVA+GI KL++  V+ D+ V +DD+ + IEA +D VQSVDI S NKL
Sbjct:    9 DQDGGLKKLNGFLTSRSYIEGFKFSSADADLFHKFLSVPDAAKYANVYRWYVHVAARLGLRAILVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSQVVIEVKPWEAETDLEELAVKI-KALPIEGLSWGEGHKLVPVAFGIKKLLVQCVIVDELVLLDDITEAIEAFEDYVQSVDIASMNKL 225
[Close]
BLAST of NO07G02210 vs. NCBI_GenBank
Match: OWY92749.1 (hypothetical protein PHMEG_00038115, partial [Phytophthora megakarya])

HSP 1 Score: 117.1 bits (292), Expect = 7.100e-23
Identity = 110/218 (50.46%), Postives = 136/218 (62.39%), Query Frame = 0 
Query:    6 DFSKGIGDLEKHLSTRSYVEGYSFSSADSSTFAALPSVPSAASNPNAFRWYLHIAAISGLKTVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVDKIEAMDDQVQSVDINSFNKL 224
            D   G+  L   L+ RSY+EG+ FS+AD++ F    SVP AA   N +RWY+HIAA  GL+ VL     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           +RSQ+V+EVKP + E +L+EL   I K +   GLTWGEG+   PVA+GI KL++  V+ DD V +DD+ D IE  +D VQSVD+ S NKL
Sbjct:    9 DQDAGLKKLNGFLTNRSYIEGFQFSAADAALFKQFSSVPDAAKFANVYRWYVHIAAKLGLRAVL-VTKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSQVVIEVKPWEAETDLEELAAKI-KALPVEGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITDAIEGFEDYVQSVDVASMNKL 224
[Close]
BLAST of NO07G02210 vs. NCBI_GenBank
Match: ETK87061.1 (hypothetical protein L915_08398 [Phytophthora parasitica] >ETL40476.1 hypothetical protein L916_08326 [Phytophthora parasitica])

HSP 1 Score: 116.7 bits (291), Expect = 9.300e-23
Identity = 114/220 (51.82%), Postives = 139/220 (63.18%), Query Frame = 0 
Query:    6 DFSKGIGDLEKHLSTRSYVEGYSFSSADSSTFAALPSVPSAASNPNAFRWYLHIAAISGLKTVL--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVNLDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDDVVDKIEAMDDQVQSVDINSFNKL 224
            D   G+  L   L+ RSY+EGY FSSAD+  F    +VP AA   N +RWY+HIAA  GL+ +L   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           +RSQ+V+EVKP + E +L+EL   I K +   GLTWGEG+   PVA+GI KL++  V+ DD V +DD+ D IE  +D VQSVD+ S NKL
Sbjct:    9 DQDAGLKKLNGFLTNRSYIEGYKFSSADADLFHKFSAVPDAAKFANVYRWYVHIAAKLGLRAILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSQVVIEVKPWEAETDLEELAAKI-KALPVEGLTWGEGHKLVPVAFGIKKLLVQCVIIDDLVLLDDITDAIEGFEDYVQSVDVASMNKL 227
The following BLAST results are available for this feature:
BLAST of NO07G02210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27134.11.600e-7081.25ef-1 guanine nucleotide exchange domain-containing... [more]
EWM23852.11.100e-3978.63ef-1 guanine nucleotide exchange domain-containing... [more]
XP_005853780.12.500e-3674.36ef-1 guanine nucleotide exchange domain-containing... [more]
CBN77382.14.100e-3155.04eukaryotic elongation factor-1 B beta [Ectocarpus ... [more]
POM64128.15.800e-2552.75EF-1 guanine nucleotide exchange domain containing... [more]
XP_002908620.14.200e-2351.82EF-1 guanine nucleotide exchange domain-containing... [more]
ETP44969.17.100e-2352.27hypothetical protein F442_08510 [Phytophthora para... [more]
XP_024584060.17.100e-2351.38ef-1 guanine nucleotide exchange domain-containing... [more]
OWY92749.17.100e-2350.46hypothetical protein PHMEG_00038115, partial [Phyt... [more]
ETK87061.19.300e-2351.82hypothetical protein L915_08398 [Phytophthora para... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL096nonsL096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000645NSK000645Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02210.1NO07G02210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580733gene_2547Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g89gene3400Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02210.1NO07G02210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02210 ID=NO07G02210|Name=NO07G02210|organism=Nannochloropsis oceanica|type=gene|length=672bp
ATGGCTCCTAAGTTTGACTTTAGCAAGGGCATCGGCGACCTGGAAAAGCA
TCTGTCGACCCGCTCATACGTTGAGGGCTACTCCTTCAGCTCCGCGGACT
CCTCAACCTTTGCTGCCCTCCCCTCCGTGCCCTCTGCTGCTTCCAACCCC
AATGCCTTCCGTTGGTACCTGCATATTGCTGCCATTTCTGGTCTTAAGAC
TGTGCTGGGTGGCGGTGGTGGCGCCGCGACCCCGTCCGTCAAGGCCCAGC
CGGCAGGCAAGGCGGCGGATGATGAAGACATGGACCTCTTCGGTGACGAT
GACGAAGAGGAGGCCGCAAAGCCCACGCTGTCGCGCGCCGAGCAAGTGGC
GGCAATGAAGGCAGAAAAAGAGGCAAAAGAGAAGGCGAATAAGAAGCGAG
ACAGGAGTCAGATCGTGTTGGAAGTCAAGCCGACCGACACGGAGGTGAAC
CTTGACGAGCTGTACATGACAATCAAGAAGGAGATAAGCCCGTCCGGTTT
GACGTGGGGGGAGGGCTACAACAAGTCGCCCGTGGCATACGGCATCTTTA
AGCTTATCATCTCCATGGTGGTGTTCGACGACGAGGTCTCGATCGACGAC
GTGGTGGATAAAATTGAGGCTATGGACGACCAGGTGCAGTCCGTGGACAT
CAACTCGTTCAACAAGCTCTAA
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protein sequence of NO07G02210.1

>NO07G02210.1-protein ID=NO07G02210.1-protein|Name=NO07G02210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MAPKFDFSKGIGDLEKHLSTRSYVEGYSFSSADSSTFAALPSVPSAASNP
NAFRWYLHIAAISGLKTVLGGGGGAATPSVKAQPAGKAADDEDMDLFGDD
DEEEAAKPTLSRAEQVAAMKAEKEAKEKANKKRDRSQIVLEVKPTDTEVN
LDELYMTIKKEISPSGLTWGEGYNKSPVAYGIFKLIISMVVFDDEVSIDD
VVDKIEAMDDQVQSVDINSFNKL*
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Synonyms
Publications