NO07G02140, NO07G02140 (gene) Nannochloropsis oceanica

Overview
NameNO07G02140
Unique NameNO07G02140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1097
Alignment locationchr7:636232..637328 +

Link to JBrowse

Properties
Property NameValue
DescriptionVacuolar protein sorting-associated protein 25
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:636232..637328 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000814ESCRT II complex
GO:0016020membrane
GO:0005768endosome
Vocabulary: Biological Process
TermDefinition
GO:0071985multivesicular body sorting pathway
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR008570ESCRT-II_cplx_vps25-sub
Homology
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BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_002296748.1 (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >EED86949.1 predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 161.0 bits (406), Expect = 3.600e-36
Identity = 78/170 (45.88%), Postives = 113/170 (66.47%), Query Frame = 0 
Query:   17 LPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKD-EYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKF 186
            LP+++ FPPFFT+QPV+ TR+ QL  WREL+L++H    I+ L L+E PL+ N  I R L+ +    VV   V SGH EW+D   +T   ++WR P+++A+ V ++   NG  G+V TVY+L+SG+++  G  F G D  + RRAL +LE+Q K  +FKG +S EDGIKF
Sbjct:    9 LPDFYHFPPFFTIQPVLSTREKQLGQWRELILKYHTDLKIKTLVLHECPLWKNANIGRELNAEEILVVVDDFVKSGHGEWEDPNQRTRCRILWRKPEQLASDVYEWAVANGYIGSVCTVYELHSGEDVN-GMSFQGADEELLRRALGILEEQEKCTIFKGETSSEDGIKF 177
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BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_017698595.1 (PREDICTED: vacuolar protein sorting-associated protein 25-like [Phoenix dactylifera])

HSP 1 Score: 161.0 bits (406), Expect = 3.600e-36
Identity = 80/177 (45.20%), Postives = 120/177 (67.80%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNE-WPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVA 188
            L D  +P +  +PP++TLQPV ETR+ Q++LW+EL+L + + + I  + L E +PLF+NP+I R+LS +AR+  +  +VA GHAEW D+      ++W   Q+ AA +L+FV+ NG   +V TV D+ SG E T G +  G D  +  RAL LLEQ+GKAA+FKG S++++G+KF A
Sbjct:    4 LGDFKVPHFFNYPPYYTLQPVKETREKQVQLWKELILDYCRNQKIFVIGLEEDFPLFSNPVIERSLSHEARKVFLNALVAEGHAEWMDKSHKKCLILWLRIQDWAAYILNFVKENGFEDSVMTVEDIRSGIE-TRGTELAGIDRGVLMRALRLLEQKGKAAIFKGTSADDEGVKFSA 179
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BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_012472221.1 (PREDICTED: vacuolar protein sorting-associated protein 25 [Gossypium raimondii] >XP_016727258.1 PREDICTED: vacuolar protein sorting-associated protein 25 [Gossypium hirsutum] >KJB21086.1 hypothetical protein B456_003G186000 [Gossypium raimondii] >KJB21087.1 hypothetical protein B456_003G186000 [Gossypium raimondii] >KJB21089.1 hypothetical protein B456_003G186000 [Gossypium raimondii])

HSP 1 Score: 159.8 bits (403), Expect = 8.100e-36
Identity = 79/175 (45.14%), Postives = 119/175 (68.00%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNL-NEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKF 186
            L D  LP +  +PP+FTLQPV ETR+ Q++LW+EL+L + + + I  + L  E+PLF+N +I RTLS +AR+  +  +VA G AEW D+ +    ++W   QE A  +++FV+ NG   +V TV ++ SG E + G + HG D TI  RAL+LLEQ+GK A+FKG S++++G+KF
Sbjct:    4 LGDFKLPHFFNYPPYFTLQPVRETREKQIQLWKELILDYCRTQKIFIVRLEEEFPLFSNSVIERTLSHEAREAFLSALVAEGRAEWLDKGRRNCLILWHRIQEWADIIVNFVKDNGFEDSVMTVEEIRSGIE-SRGTELHGIDRTILMRALKLLEQKGKLAIFKGTSTDDEGVKF 177
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: GAX20654.1 (ESCRT-II complex subunit VPS25 [Fistulifera solaris])

HSP 1 Score: 159.5 bits (402), Expect = 1.100e-35
Identity = 74/175 (42.29%), Postives = 116/175 (66.29%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKAR-QEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKF 186
            +++   PE+++FPPFFT+QPV+ +R+ QL LWREL+LR+H    I+ L +++ PL+ N  I+R L       +V++  V  GH EW+D  KT   ++WR P+++AA +  +  + G  G+V TVY+L+SG+++  G  F G D  + RRAL +LE+ GK  +F+G +SEE GIKF
Sbjct:    1 MSNFEYPEFYSFPPFFTIQPVLSSREKQLTLWRELILRYHAEHKIKTLVVHDCPLWKNDAIHRQLRYPEEVMQVMEDFVKHGHGEWEDGNKTRCRILWRKPEQLAADIYQWAEQTGHIGSVCTVYELHSGEDV-HGLSFQGLDEELLRRALAILEKSGKCTIFQGDTSEEVGIKF 174
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_024175015.1 (vacuolar protein sorting-associated protein 25 [Rosa chinensis] >XP_024175016.1 vacuolar protein sorting-associated protein 25 [Rosa chinensis] >PRQ18988.1 putative ESCRT-II complex, vps25 subunit, winged helix-turn-helix DNA-binding protein [Rosa chinensis])

HSP 1 Score: 159.1 bits (401), Expect = 1.400e-35
Identity = 77/175 (44.00%), Postives = 121/175 (69.14%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNE-WPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKF 186
            L D  LP++  +PP+FTLQPV +TR+ Q++LW+EL+L + + + I  + L E +PLF+NP+I R+LS +AR+  +  +V+ G AEW D+      ++W   QE A  +L+FV+ NG+  +V TV ++ SG E + G + HG D TI  RAL+LLEQ+GK A+FKG +++++G+KF
Sbjct:    4 LGDYKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCRTQKIFVIGLEEDFPLFSNPVIERSLSHEAREAFLSILVSDGRAEWLDKRHRKCLILWHRIQEWANIILNFVKENGLEDSVMTVEEIRSGIE-SRGTELHGIDRTILMRALKLLEQKGKLAIFKGTTADDEGVKF 177
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_015897317.1 (PREDICTED: vacuolar protein sorting-associated protein 25-like [Ziziphus jujuba])

HSP 1 Score: 158.7 bits (400), Expect = 1.800e-35
Identity = 79/175 (45.14%), Postives = 119/175 (68.00%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNL-NEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKF 186
            L D  LP +  +PP+FTLQPV +TR+ Q++LW+EL+L + + + I  + L  E+PLF+NP+I RTLS +AR+  +  +V+ G AEW D+      ++W   QE A  +L+FV+ NG+  +V TV ++ SG E + G +  G D TI  RAL+LLEQ+GK A+FKG S++++GIKF
Sbjct:    4 LGDFKLPHFFNYPPYFTLQPVRDTREKQVQLWKELILDYCRTQKIFVIGLEEEFPLFSNPVIERTLSHEAREAFLSALVSEGRAEWLDKGHRKCLILWHRIQEWADIILNFVKDNGLEDSVMTVEEIRSGTE-SRGTELSGIDRTILMRALKLLEQKGKLAIFKGTSADDEGIKF 177
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_021274731.1 (vacuolar protein sorting-associated protein 25 [Herrania umbratica] >XP_021274741.1 vacuolar protein sorting-associated protein 25 [Herrania umbratica])

HSP 1 Score: 158.7 bits (400), Expect = 1.800e-35
Identity = 79/175 (45.14%), Postives = 119/175 (68.00%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNL-NEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKF 186
            L D  LP +  +PP+FTLQPV ETR+ Q++LW++L+L + + + I  L L  E+PLF+NP+I RTLS +AR+  +  +V+ G AEW D+      ++W   Q+ A S+L FV+ NG   +V TV ++ SG E + G + HG D TI  RAL++LEQ+GK A+FKG S++++G+KF
Sbjct:    4 LGDFKLPHFFNYPPYFTLQPVRETREKQVQLWKDLILDYCRTQKIFVLGLEEEFPLFSNPVIERTLSHEAREAFLSALVSEGRAEWLDKGHRKCRILWHRIQDWADSILKFVKDNGFEDSVMTVEEIRSGIE-SRGTELHGIDRTILIRALKILEQKGKLAIFKGTSADDEGVKF 177
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: EOY25230.1 (E2F/DP family winged-helix DNA-binding domain isoform 1 [Theobroma cacao] >EOY25231.1 E2F/DP family winged-helix DNA-binding domain isoform 1 [Theobroma cacao])

HSP 1 Score: 158.3 bits (399), Expect = 2.400e-35
Identity = 77/175 (44.00%), Postives = 118/175 (67.43%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNL-NEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKF 186
            L D  LP +  +PP+FTLQPV ETR+ Q++LW++L+L + + + I  + L  E+PLF+NP+I RTLS +AR+     +V+ G AEW D+      ++W   Q+ A  +L+FV+ NG   +V TV ++ SG E + G + HG D TI  RAL++LEQ+GK A+FKG S++++G+KF
Sbjct:    4 LGDFKLPHFFNYPPYFTLQPVRETREKQVQLWKDLILDYCRTQKIFIIGLEEEFPLFSNPVIERTLSHEAREAFFSALVSEGRAEWLDKGHRKCLILWHRIQDWAGIILNFVKDNGFEDSVMTVEEIRSGIE-SRGTELHGIDRTILMRALKILEQKGKLAIFKGTSADDEGVKF 177
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_015868328.1 (PREDICTED: vacuolar protein sorting-associated protein 25 [Ziziphus jujuba] >XP_015868329.1 PREDICTED: vacuolar protein sorting-associated protein 25 [Ziziphus jujuba])

HSP 1 Score: 158.3 bits (399), Expect = 2.400e-35
Identity = 78/175 (44.57%), Postives = 119/175 (68.00%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNL-NEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKF 186
            L D  LP +  +PP+FTLQPV +TR+ Q++LW+EL+L + + + I  + L  E+PLF+NP+I RTLS +AR+  +  +V+ G AEW D+      ++W   QE A  +L+FV+ NG+  +V TV ++ SG E + G +  G D TI  RAL+LLEQ+GK A+FKG S++++G+KF
Sbjct:    4 LGDFKLPHFFNYPPYFTLQPVRDTREKQVQLWKELILDYCRTQKIFVIGLEEEFPLFSNPVIERTLSHEAREAFLSALVSEGRAEWLDKGHRKCLILWHRIQEWADIILNFVKDNGLEDSVMTVEEIRSGTE-SRGTELSGIDRTILMRALKLLEQKGKLAIFKGTSADDEGVKF 177
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_024030551.1 (vacuolar protein sorting-associated protein 25 [Morus notabilis] >XP_024030552.1 vacuolar protein sorting-associated protein 25 [Morus notabilis] >XP_024030553.1 vacuolar protein sorting-associated protein 25 [Morus notabilis])

HSP 1 Score: 157.9 bits (398), Expect = 3.100e-35
Identity = 77/175 (44.00%), Postives = 119/175 (68.00%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNL-NEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKF 186
            L D  LP +  +PP+FTLQPV + R+ Q++LW+EL+L + + + I  + L  E+PLF+NP+I R+L+ +AR+  +  +V+ G AEW D+      ++W   QE A  +++FV+ NG+   V TV ++ SG E + G D HG D TI  RAL+LLEQ+GK ALFKG+S++++G+KF
Sbjct:    4 LGDLKLPHFFNYPPYFTLQPVRDIREKQIQLWKELILEYCRFQKIFVIGLEEEFPLFSNPVIERSLNHEAREAFLSALVSEGRAEWLDKGHRKCLILWHRIQEWADIIVNFVKDNGLEDTVMTVEEIRSGIE-SRGTDLHGIDRTILMRALKLLEQKGKLALFKGSSADDEGVKF 177
The following BLAST results are available for this feature:
BLAST of NO07G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002296748.13.600e-3645.88predicted protein, partial [Thalassiosira pseudona... [more]
XP_017698595.13.600e-3645.20PREDICTED: vacuolar protein sorting-associated pro... [more]
XP_012472221.18.100e-3645.14PREDICTED: vacuolar protein sorting-associated pro... [more]
GAX20654.11.100e-3542.29ESCRT-II complex subunit VPS25 [Fistulifera solari... [more]
XP_024175015.11.400e-3544.00vacuolar protein sorting-associated protein 25 [Ro... [more]
XP_015897317.11.800e-3545.14PREDICTED: vacuolar protein sorting-associated pro... [more]
XP_021274731.11.800e-3545.14vacuolar protein sorting-associated protein 25 [He... [more]
EOY25230.12.400e-3544.00E2F/DP family winged-helix DNA-binding domain isof... [more]
XP_015868328.12.400e-3544.57PREDICTED: vacuolar protein sorting-associated pro... [more]
XP_024030551.13.100e-3544.00vacuolar protein sorting-associated protein 25 [Mo... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL103nonsL103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL096nonsL096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR131ngnoR131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000621NSK000621Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02140.1NO07G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580719gene_2540Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g110gene3418Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02140.1NO07G02140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02140 ID=NO07G02140|Name=NO07G02140|organism=Nannochloropsis oceanica|type=gene|length=1097bp
TATTATATTGCTTCAAAAGAATAATAAGTTCTAAGGACTACATTTGGCAT
AGGGTTCCCAAAGAATAAAACGGCAACAAGAGGTCAACTCCAAGTACTAT
CTTTGTTTTGCTTACTGGCTCTACAGCTGAGCCAAACTCGGGGTGCCGAT
GGCCCCCAGACTTCCCCTCTCCTCCTCAGCACGCTGATCTTTTTTCTCTT
GAGGGGAGGTTGAGGATGTTATCGCAACGACAGCGCCACTTTTATGCATC
ATGCATGATAATAACAACACACAACCTACAGGCTATCTCCTCCCCTAGCT
ACGTCAGATTATTCCTCTCGCCCTCCTCTGACTTATCCTATTTTCCGCCC
GAGCCCCTCAGATTTTGTCTGGGGCTCCACGTCGATTCCCCCGGCCTCAG
CTTTTTCTTCTACACAAAAGCAACAAATGGCAACCACCACGTCCACGTCC
CCCATCGTCCTGGCAGACACCAGCCTGCCGGAGTACCATGCCTTCCCGCC
CTTTTTTACACTTCAGCCCGTCGTGGAAACTCGGAAGATCCAGCTTCGGC
TATGGCGGGAGCTGGTGCTACGGTGGCATCAAGCCCGGGGCATACAAAAC
CTAAACCTTAACGAGTGGCCGCTCTTTGCCAACCCTATCATCAATCGTAC
CTTATCCTTGAAGGCACGCCAGGAGGTGGTGCAGGGCATGGTGGCGAGCG
GGCACGCAGAATGGAAAGACGAGTATAAGACCACGGCCTTTGTCATGTGG
CGGTCCCCGCAAGAAATTGCAGCCTCCGTCCTGGACTTTGTGCGGAGAAA
TGGAATGGCTGGCAATGTGTACACGGTATATGATTTGTACTCTGGAGATG
AGATAACTGCGGGCGCAGATTTTCATGGCACGGACCCTACCATTTTTCGA
CGTGCCCTGGAATTATTAGAGCAGCAAGGCAAGGCAGCCTTGTTCAAAGG
AGCGTCGTCGGAAGAAGATGGCATTAAGTTTGTCGCGGATGCCTAGGCAA
CATTTTGGGAGTGAGAATAACATAACATTTAAGTGTGAAAATACCAACGG
TGATTTCGATTGCAAAAGTATGGAAGAAATAAAGTACTTGAGGAAAG
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protein sequence of NO07G02140.1

>NO07G02140.1-protein ID=NO07G02140.1-protein|Name=NO07G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MATTTSTSPIVLADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRW
HQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEY
KTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFH
GTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVADA*
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Synonyms
Publications