NO07G02140, NO07G02140 (gene) Nannochloropsis oceanica

Overview
NameNO07G02140
Unique NameNO07G02140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1097
Alignment locationchr7:636232..637328 +

Link to JBrowse

Properties
Property NameValue
DescriptionVacuolar protein sorting-associated protein 25
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:636232..637328 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000814ESCRT II complex
GO:0016020membrane
GO:0005768endosome
Vocabulary: Biological Process
TermDefinition
GO:0071985multivesicular body sorting pathway
GO:0006810transport
Vocabulary: INTERPRO
TermDefinition
IPR036390WH_DNA-bd_sf
IPR008570ESCRT-II_cplx_vps25-sub
Homology
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BLAST of NO07G02140 vs. NCBI_GenBank
Match: EWM27184.1 (vacuolar protein sorting-associated protein 25 [Nannochloropsis gaditana])

HSP 1 Score: 293.5 bits (750), Expect = 4.700e-76
Identity = 135/173 (78.03%), Postives = 156/173 (90.17%), Query Frame = 0 
Query:   17 LPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVADA 190
            LPEYH FPPFFTLQPV+ETRK+QL+LWRELVL+WHQA+G+Q L LNEWPLFANP INRTL L  R+EVVQ +V+SGHAEWKD+ +TTA V+WRS QE+AAS+L F+R NGMAGNVYTVY+L +GDEIT GADFHGT+PTIFRRALE+LE+QGKAALFKG+S E DGIKFVADA
Sbjct:   12 LPEYHGFPPFFTLQPVLETRKMQLKLWRELVLKWHQAKGVQILKLNEWPLFANPAINRTLPLDGRREVVQSLVSSGHAEWKDDSRTTALVLWRSAQEVAASILTFIRDNGMAGNVYTVYELRAGDEITVGADFHGTEPTIFRRALEILERQGKAALFKGSSEEGDGIKFVADA 184
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BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_002182843.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC45579.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 173.7 bits (439), Expect = 5.400e-40
Identity = 78/174 (44.83%), Postives = 117/174 (67.24%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKF 186
            + D   PE+++FPPFFT+QPV+ TR+ Q+ LWREL+LR+H  + I+ L +++ PL+ N  I R L     QEV+      GH EW+D  KTT  ++WR+P+++A  +  +  +NG  G+V TVY+L+SG+++  G  F G D  + RRAL +LE +GK  +F+G +SEEDGIKF
Sbjct:    1 MPDFQYPEFYSFPPFFTIQPVLATREKQMALWRELILRYHTEKKIKTLVVHDCPLWKNDNIKRRLQPGEIQEVLDDFCRHGHGEWQDANKTTCRILWRTPEQLATDIHQWAEKNGYVGSVCTVYELHSGEDVN-GMSFQGADEELLRRALSILEDRGKCTIFRGETSEEDGIKF 173
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BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_008899199.1 (hypothetical protein PPTG_06905 [Phytophthora parasitica INRA-310] >ETI55520.1 hypothetical protein F443_01799 [Phytophthora parasitica P1569] >ETK95351.1 hypothetical protein L915_01714 [Phytophthora parasitica] >ETL48742.1 hypothetical protein L916_01686 [Phytophthora parasitica] >ETM01798.1 hypothetical protein L917_01651 [Phytophthora parasitica] >ETM55032.1 hypothetical protein L914_01707 [Phytophthora parasitica] >ETN15678.1 hypothetical protein PPTG_06905 [Phytophthora parasitica INRA-310] >ETO84277.1 hypothetical protein F444_01800 [Phytophthora parasitica P1976] >ETP25351.1 hypothetical protein F441_01762 [Phytophthora parasitica CJ01A1] >ETP53353.1 hypothetical protein F442_01736 [Phytophthora parasitica P10297])

HSP 1 Score: 171.8 bits (434), Expect = 2.100e-39
Identity = 80/172 (46.51%), Postives = 114/172 (66.28%), Query Frame = 0 
Query:   16 SLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVA 188
            S PEY+ FPPFFTLQPV  TR+ QL LW++L+L +H+A  +         LF N  I+R ++   R  VV+ ++  GH  W+D+ KT   +MW+ P E AA + DF + +GM GNV+TVY+LY+G+E T G + HG +P + R AL +LE +GKAA+  G + EEDG+KF+A
Sbjct:    5 SYPEYYDFPPFFTLQPVRATREKQLVLWQQLILEYHRAHDLPLFQPLASTLFENVKISRNMAQDGRMAVVEHLIRCGHGRWEDDTKTRCRIMWKKPAEWAAEIYDFAKEHGMLGNVFTVYELYAGEE-TLGTNIHGMEPWLLREALRVLEGEGKAAVIAGETCEEDGVKFLA 175
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BLAST of NO07G02140 vs. NCBI_GenBank
Match: CCA18081.1 (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 171.0 bits (432), Expect = 3.500e-39
Identity = 79/172 (45.93%), Postives = 115/172 (66.86%), Query Frame = 0 
Query:   16 SLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVA 188
            + PEY  FPPFFT+QPV  TR+ QL LW++L+L +H A+ +   N    P+F N  I+R +  + R  +++ ++  G+A W+D  +T   VMW+ P E A  + DFV+  GM G +YTVY+LY+G+E T G+ FHG +P I R AL++LEQ GKA L  GA+ +EDG+KF+A
Sbjct:    8 TFPEYFDFPPFFTIQPVRATREKQLGLWKQLILDYHHAKEVSIFNPQTSPVFENSKISRKMKSEGRTTIIEFLIQCGNAMWEDISQTRCRVMWKKPTEWAVELYDFVKDRGMLGEIYTVYELYAGEE-TLGSQFHGMEPWILRDALKILEQHGKAMLIFGATCQEDGVKFIA 178
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_009830361.1 (hypothetical protein, variant [Aphanomyces astaci] >ETV80437.1 hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 170.2 bits (430), Expect = 6.000e-39
Identity = 83/174 (47.70%), Postives = 115/174 (66.09%), Query Frame = 0 
Query:   16 SLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVADA 190
            + PE++ FPPFFTLQPV  TR+ QL LW+ LVL +H++     L  N  P+F N  INR LS++AR  +V  +V  G+AEW+D+  T   + W+ P E AA +  F    GM  NVYTVY+L+SG+E T GA F+G +P + R+ALE+LE + KAA+  G + E DG+KF+A A
Sbjct:    9 TFPEHYGFPPFFTLQPVRSTREKQLILWKALVLDYHKSMNQPVLTPNSSPIFENQQINRKLSMEARTAIVTYLVRCGNAEWEDDTHTRLRIFWKPPAEWAAEIYTFATDRGMISNVYTVYELHSGEE-TQGASFYGLEPWLLRKALEILEHEAKAAIIHGDTPENDGVKFLATA 181
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: CCI11058.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 170.2 bits (430), Expect = 6.000e-39
Identity = 78/172 (45.35%), Postives = 116/172 (67.44%), Query Frame = 0 
Query:   16 SLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVA 188
            + PEY+ FPPFFTLQPV  TR+ QL LW++L+L +HQAR +   +    PLFAN  I+R +  + +  +++ ++  G+A W+D  +T   ++W+ P E AA + DFV+  GM G +YTVY+LY+G+E T G+ FHG +P   R AL++LE+ GK  L  G + EEDG+KF+A
Sbjct:    8 TFPEYYDFPPFFTLQPVRATREKQLGLWKQLILDYHQARHLSIFSPQTSPLFANCKISRKMKAEGQTAIIEYLIQCGNAIWEDASETRCRLIWKKPAEWAAELYDFVKGRGMLGKIYTVYELYAGEE-TLGSQFHGMEPWSLRDALKILEEHGKVVLISGTTCEEDGVKFIA 178
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_008617071.1 (hypothetical protein SDRG_12768 [Saprolegnia diclina VS20] >EQC29519.1 hypothetical protein SDRG_12768 [Saprolegnia diclina VS20])

HSP 1 Score: 168.7 bits (426), Expect = 1.700e-38
Identity = 85/185 (45.95%), Postives = 120/185 (64.86%), Query Frame = 0 
Query:    5 TSTSPIVLADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVADA 190
            T+T+P   A    PE++ FPPFFTLQP+  TR+ QL LW+ LV+ +H+A        N  P+F N  INR LS++AR  VV  +V  G+ EW+D+  T   + W+SP E AA +  F + NGM  NVYT+Y+L++GDE T GA F+G +  + R+ALE+LE + KAA+  G + E DG+KF+A A
Sbjct:    2 TTTAP---AGFEFPEHYHFPPFFTLQPIRSTREKQLILWKTLVVEYHRALQQPIFTPNTTPIFENTTINRKLSMEARHAVVSYIVRCGNGEWEDDTHTRCRIFWKSPAEWAAEIYAFAQDNGMLNNVYTLYELHAGDE-TEGASFYGIEMWLLRKALEVLEHEAKAAIIHGDTPENDGVKFLATA 182
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: XP_010924814.1 (PREDICTED: vacuolar protein sorting-associated protein 25 [Elaeis guineensis] >XP_010924815.1 PREDICTED: vacuolar protein sorting-associated protein 25 [Elaeis guineensis])

HSP 1 Score: 166.4 bits (420), Expect = 8.600e-38
Identity = 84/177 (47.46%), Postives = 121/177 (68.36%), Query Frame = 0 
Query:   12 LADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNE-WPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVA 188
            L D  LP +  +PP+FTLQPV ETR+ Q++LW+EL+L + + + I  + L E +PLF+NP+I R+LS +AR+  +  +VA GHAEW D+      ++WR  Q+ AA +L+FV+ NG   +V TV D+ SG E T G D  G D  +  RAL LLEQ+GKAA+FKG S++++G+KF A
Sbjct:    4 LGDFKLPYFFNYPPYFTLQPVRETREKQVQLWKELILDYCRNQKIFVIGLEEDFPLFSNPVIERSLSHEARKVFLNALVAEGHAEWMDKSHKKCLILWRRIQDWAAYILNFVKENGFEDSVMTVEDIRSGIE-TRGTDLAGIDRGVLMRALRLLEQKGKAAIFKGTSADDEGVKFSA 179
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: OQR84489.1 (hypothetical protein ACHHYP_13295 [Achlya hypogyna])

HSP 1 Score: 164.1 bits (414), Expect = 4.300e-37
Identity = 80/184 (43.48%), Postives = 119/184 (64.67%), Query Frame = 0 
Query:    6 STSPIVLADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVADA 190
            +T+P      + PE++ FPPFFTLQP+  TR+ QL LW+ LV+ +H+A        N  P+F N  I+R LS++AR  VV  +V  G+AEW+D+  T   + W+SP E AA +  F +  GM  NVYT+++L++G+E T GA F+G +  + R+ALE+LE + KAA+  G + E DG+KF+A A
Sbjct:    2 TTAPAPATTFTFPEHYHFPPFFTLQPIRSTREKQLILWKALVVDYHRALNQPIFTPNTTPIFENRDISRKLSMEARHAVVSYLVRCGNAEWEDDTHTRCRIFWKSPAEWAAEIYAFAQERGMLNNVYTLFELHAGEE-TQGASFYGIESWLLRKALEVLEHEAKAAIIHGDTPENDGVKFLATA 184
[Close]
BLAST of NO07G02140 vs. NCBI_GenBank
Match: GAY02892.1 (Hypothetical protein PINS_010729 [Pythium insidiosum])

HSP 1 Score: 163.7 bits (413), Expect = 5.600e-37
Identity = 77/166 (46.39%), Postives = 112/166 (67.47%), Query Frame = 0 
Query:   18 PEYHAFPPFFTLQPVVETRKIQLRLWRELVLRWHQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEYKTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFHGTDPTIFRRALELLEQQGKAALFKGASSEEDGI 184
            PEY+ FPPFFTLQPV  TR+ QL LW++L+L +H++           PLF N  I+R +S + R  VV+ ++  G+  W+D+ +T   +MW+ P E AA + DF +  GM GNV+TVY+LY+G+E T G+  HG +P + R AL++LE +GKAA+ +GA+ EEDGI
Sbjct:    7 PEYYDFPPFFTLQPVRATREKQLTLWKQLILEYHRSHAQPLFQPFSSPLFENAKISRKMSQEGRVAVVEYLIRCGNGAWEDDTRTRCRIMWKKPTEWAAELYDFAQDRGMLGNVFTVYELYAGEE-TLGSAIHGMEPWLLREALKVLESEGKAAIIEGATLEEDGI 171
The following BLAST results are available for this feature:
BLAST of NO07G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM27184.14.700e-7678.03vacuolar protein sorting-associated protein 25 [Na... [more]
XP_002182843.15.400e-4044.83predicted protein [Phaeodactylum tricornutum CCAP ... [more]
XP_008899199.12.100e-3946.51hypothetical protein PPTG_06905 [Phytophthora para... [more]
CCA18081.13.500e-3945.93conserved hypothetical protein [Albugo laibachii N... [more]
XP_009830361.16.000e-3947.70hypothetical protein, variant [Aphanomyces astaci]... [more]
CCI11058.16.000e-3945.35unnamed protein product [Albugo candida][more]
XP_008617071.11.700e-3845.95hypothetical protein SDRG_12768 [Saprolegnia dicli... [more]
XP_010924814.18.600e-3847.46PREDICTED: vacuolar protein sorting-associated pro... [more]
OQR84489.14.300e-3743.48hypothetical protein ACHHYP_13295 [Achlya hypogyna... [more]
GAY02892.15.600e-3746.39Hypothetical protein PINS_010729 [Pythium insidios... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL103nonsL103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL096nonsL096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR131ngnoR131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000621NSK000621Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02140.1NO07G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580719gene_2540Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g110gene3418Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02140.1NO07G02140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02140 ID=NO07G02140|Name=NO07G02140|organism=Nannochloropsis oceanica|type=gene|length=1097bp
TATTATATTGCTTCAAAAGAATAATAAGTTCTAAGGACTACATTTGGCAT
AGGGTTCCCAAAGAATAAAACGGCAACAAGAGGTCAACTCCAAGTACTAT
CTTTGTTTTGCTTACTGGCTCTACAGCTGAGCCAAACTCGGGGTGCCGAT
GGCCCCCAGACTTCCCCTCTCCTCCTCAGCACGCTGATCTTTTTTCTCTT
GAGGGGAGGTTGAGGATGTTATCGCAACGACAGCGCCACTTTTATGCATC
ATGCATGATAATAACAACACACAACCTACAGGCTATCTCCTCCCCTAGCT
ACGTCAGATTATTCCTCTCGCCCTCCTCTGACTTATCCTATTTTCCGCCC
GAGCCCCTCAGATTTTGTCTGGGGCTCCACGTCGATTCCCCCGGCCTCAG
CTTTTTCTTCTACACAAAAGCAACAAATGGCAACCACCACGTCCACGTCC
CCCATCGTCCTGGCAGACACCAGCCTGCCGGAGTACCATGCCTTCCCGCC
CTTTTTTACACTTCAGCCCGTCGTGGAAACTCGGAAGATCCAGCTTCGGC
TATGGCGGGAGCTGGTGCTACGGTGGCATCAAGCCCGGGGCATACAAAAC
CTAAACCTTAACGAGTGGCCGCTCTTTGCCAACCCTATCATCAATCGTAC
CTTATCCTTGAAGGCACGCCAGGAGGTGGTGCAGGGCATGGTGGCGAGCG
GGCACGCAGAATGGAAAGACGAGTATAAGACCACGGCCTTTGTCATGTGG
CGGTCCCCGCAAGAAATTGCAGCCTCCGTCCTGGACTTTGTGCGGAGAAA
TGGAATGGCTGGCAATGTGTACACGGTATATGATTTGTACTCTGGAGATG
AGATAACTGCGGGCGCAGATTTTCATGGCACGGACCCTACCATTTTTCGA
CGTGCCCTGGAATTATTAGAGCAGCAAGGCAAGGCAGCCTTGTTCAAAGG
AGCGTCGTCGGAAGAAGATGGCATTAAGTTTGTCGCGGATGCCTAGGCAA
CATTTTGGGAGTGAGAATAACATAACATTTAAGTGTGAAAATACCAACGG
TGATTTCGATTGCAAAAGTATGGAAGAAATAAAGTACTTGAGGAAAG
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protein sequence of NO07G02140.1

>NO07G02140.1-protein ID=NO07G02140.1-protein|Name=NO07G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
MATTTSTSPIVLADTSLPEYHAFPPFFTLQPVVETRKIQLRLWRELVLRW
HQARGIQNLNLNEWPLFANPIINRTLSLKARQEVVQGMVASGHAEWKDEY
KTTAFVMWRSPQEIAASVLDFVRRNGMAGNVYTVYDLYSGDEITAGADFH
GTDPTIFRRALELLEQQGKAALFKGASSEEDGIKFVADA*
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Synonyms
Publications