NO07G02120, NO07G02120 (gene) Nannochloropsis oceanica

Overview
NameNO07G02120
Unique NameNO07G02120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1871
Alignment locationchr7:630846..632716 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:630846..632716 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO07G02120 vs. NCBI_GenBank
Match: EWM27220.1 (hypothetical protein Naga_100010g108 [Nannochloropsis gaditana])

HSP 1 Score: 140.2 bits (352), Expect = 1.500e-29
Identity = 175/407 (43.00%), Postives = 238/407 (58.48%), Query Frame = 0 
Query:    1 MPPKRASTIKIAAKEEAAKEQEKRMVERMKALTKGLENALLEKSEDAMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGMKPSTLVKRKSTSPVERLTKKQAIEEAAQILRVRSSNYSPSATTNASGTTKFQRTMTTSHPSMTFRGRGIPSRRHALSRPVM--TTDEKAETEXXXXXNDVVMPPARQNTRGLVQVSAPAPIRATHAPLVPLLSVRTSGGPSRRSYDKGEE---VGGKQS-------IGTLGHLGHGLFKLLTYAIIILSSVFALHVGVETYKLYTPLCFSDSFSNGQVMTGRPPNAGACKTTWCCPPLLHCHAGRIAGVVAL--EKVANAFGYTSITSTTSSPVPMEVAGG----RREYSMKEPEKPEEAWEDEGG 390
            MPPK+ S++K AAKEEA +EQ+KR+ ER K+L+K L+ A   + EDAMD           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        KRKS SPVERLTKKQAIE+A+  ++ RS+ +S S   ++S     ++   +   +   RGRGIPS+R    +PV            XXXXX      P R     +++VSA    R      VPL +     G +R    + EE   V  +Q+       +G L  LG+ +F+L+ YA++IL+  F LH+  E Y + TPLCF DS+S+G+V++G+  +   CKT   CPPL  CH G+I G+  +  EKV ++    SI+S + + VP  V  G     +  S  E ++ ++A E+EGG
Sbjct:   30 MPPKK-SSLKSAAKEEAIREQQKRISERTKSLSKALK-AAPTRDEDAMD----VDEEGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKSVSPVERLTKKQAIEDASNAIKARSNAHS-SLMASSSSAFSHRKVSASVQATAPARGRGIPSKRLGAVKPVQLRAXXXXXXXXXXXXXXXXXXAPWRSARHSVLRVSALTRRRVA----VPLAASPQPPGRARADRLRPEEELDVAKEQATENAVKPMGVLLRLGYAMFRLVGYAVVILTVAFTLHLSFEAYHVMTPLCFYDSYSDGKVLSGQ--SGKTCKTVVPCPPLFLCHGGQIRGLAGMIPEKVNDS---ASISSESQTEVPEHVKEGLSLNAQRNSPDEKDQLQDAGEEEGG 420
The following BLAST results are available for this feature:
BLAST of NO07G02120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27220.11.500e-2943.00hypothetical protein Naga_100010g108 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL103nonsL103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL096nonsL096Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR131ngnoR131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000623NSK000623Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02120.1NO07G02120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580710gene_2538Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g108gene3417Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02120.1NO07G02120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02120 ID=NO07G02120|Name=NO07G02120|organism=Nannochloropsis oceanica|type=gene|length=1871bp
ACCGGGTCTATCAGGAGACCCGTTCTGTCGCCATCAGTCACCAAGCAACG
TGCGGTCGTGTCACAAGACTTTTCCACGAGAGCGCATCACATATTGAGGT
CACCTTTAGGCTTGTACGGCCTGTTGAGAGCACCGGTAAAATGAGCATAT
GAAACAACTGCTGGCTGGCTTGCTTACCCATCCAGCTCCCTAGCGCCCAC
GTTCGCATGCATGCCTTCAACAACCCCACATATCGCACAACTACCACCAC
AGCTCGTACATCGCTAACAAATCCTTCCCATCATCAGGGAGGATGCCTCC
AAAGgtacgtgagctgagtacatggatatacgtgtggccaatctttttgc
aaggagtaaaaccttggcaccttaagtgatgatgattacctaattgctcg
ttcctgatccctacacgttagAGGGCCTCCACGATAAAAATCGCGGCCAA
GGAAGAGGCAGCGAAGGAACAGGAAAAACGGATGGTTGAGCGGATGAAGG
CATTGACGAAGGGCCTGGAGAATGCACTTTTAGAAAAGAGTGAAGACGCC
ATGGACATCGACGAAGACGAGGAGGAAGACAGGACGCCCCGCCCCAGCAC
CGCCCGTGCCGGCGCCCGCTCCCGCACCGCCACCAGCACGACTAGTACAT
CAAGCAGGATAAGAAGCAACAGAAGTAGCTGCGGGAGTGGCAGTGGTAGC
AAGAGCGGCATGAAACCGAGCACCTTAGTCAAGCGGAAGAGTACATCGCC
AGTCGAGCGATTGACCAAGAAGCAGGCCATCGAAGAGGCAGCCCAGATCC
TCCGAGTCCGCAGCAGCAATTACTCTCCCTCCGCTACCACAAATGCCTCC
GGTACTACGAAGTTTCAACGGACCATGACGACGTCCCATCCTTCCATGAC
TTTTCGAGGCCGTGGTATCCCTTCGCGACGGCATGCCCTATCCCGGCCTG
TGATGACGACCGACGAGAAGGCGGAAACAGAGGAGGACGAAGAAGACAAT
GATGTGGTCATGCCTCCTGCTCGCCAAAATACCCGAGGACTCGTTCAAGT
ATCGGCGCCGGCGCCGATAAGAGCAACCCATGCTCCTCTTGTGCCCCTGC
TGTCCGTCCGCACGAGCGGAGGCCCGTCACGTCGTTCGTACGATAAGGGC
GAGGAAGTGGGGGGAAAACAGTCCATTGGTACACTGGGTCATTTGGGCCA
CGGCCTGTTCAAGCTCCTAACGTACGCCATCATCATTTTGAGCTCTGTAT
TTGCCCTCCATGTGGGGGTCGAAACATATAAACTCTACACGCCGTTGTGC
TTCTCCGACTCCTTTAGCAACGGACAGGTCATGACGGGACGTCCTCCGAA
TGCGGGGGCATGTAAAACCACGTGGTGTTGCCCCCCATTACTCCATTGCC
ATGCTGGTCGCATCGCGGGCGTCGTGGCTCTGGAGAAAGTCGCCAACGCC
TTTGGCTACACCAGCATCACAAGCACCACCAGCAGCCCTGTGCCTATGGA
AGTTGCCGGGGGGAGGAGGGAGTATTCGATGAAGGAACCGGAAAAGCCCG
AAGAGGCATGGGAAGATGAGGGGGGGGACGATGGATATTCGGAGGAGATG
GAGGACAAGGATCATTGGGCAGAGCAGGAGGCGATGGGAGATACCCACGA
GCATGCGGAGGAGCACAACGATCTTGAGTACTCGCAAGAGACGGAGCACG
GGCAGTGAAGAGGAGTATACACCCACCCAGTAAGGATACATGTCAGACTA
TCAAAGCATAGTAGTATATTATTTATTTTATCTTATTTCAAAATGGCATC
GGCCAACTCCACGGGAACAATAGATACATACAATGAGCACTAAGAAGAGT
GGCAAATGCATTTTGAGGAGA
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protein sequence of NO07G02120.1

>NO07G02120.1-protein ID=NO07G02120.1-protein|Name=NO07G02120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MPPKRASTIKIAAKEEAAKEQEKRMVERMKALTKGLENALLEKSEDAMDI
DEDEEEDRTPRPSTARAGARSRTATSTTSTSSRIRSNRSSCGSGSGSKSG
MKPSTLVKRKSTSPVERLTKKQAIEEAAQILRVRSSNYSPSATTNASGTT
KFQRTMTTSHPSMTFRGRGIPSRRHALSRPVMTTDEKAETEEDEEDNDVV
MPPARQNTRGLVQVSAPAPIRATHAPLVPLLSVRTSGGPSRRSYDKGEEV
GGKQSIGTLGHLGHGLFKLLTYAIIILSSVFALHVGVETYKLYTPLCFSD
SFSNGQVMTGRPPNAGACKTTWCCPPLLHCHAGRIAGVVALEKVANAFGY
TSITSTTSSPVPMEVAGGRREYSMKEPEKPEEAWEDEGGDDGYSEEMEDK
DHWAEQEAMGDTHEHAEEHNDLEYSQETEHGQ*
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Synonyms
Publications