NO07G02050, NO07G02050 (gene) Nannochloropsis oceanica

Overview
NameNO07G02050
Unique NameNO07G02050
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1125
Alignment locationchr7:600642..601766 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:600642..601766 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO07G02050 vs. NCBI_GenBank
Match: EWM27225.1 (hypothetical protein Naga_100010g100 [Nannochloropsis gaditana])

HSP 1 Score: 313.5 bits (802), Expect = 8.600e-82
Identity = 182/365 (49.86%), Postives = 232/365 (63.56%), Query Frame = 0 
Query:    8 LLRLRYIASTNTQANAICEELALALRLSTSQASSSNASPHSCLQLGNALLEFTPLPLWMTLARHSTMLKRPQVARLCGIDVFTNSAI------MTPAPLSSSYHDARAWLLEDRPIVTPTVRTVPSTSSVSLASTMSPQVREIVLGAGANLAELASIITDEVGAHPCPGLPHVYALHDGMKGNSAGNKAPLNANSIIDAPGFLKQAQSPQQQHSSLSLQRNSIALRLLHSPMSALVLQVESGGLAAAKEDLWHRGVKFEEIGGTGAAEGQILLSSPHLHGLDVRICDGEAALSPFFNEGDEVLCEHVLEELNPAISKSLAAVGEGWKQASSPAAAYRQMGTGMGDCWSEFRSQLKRPGGFFMSSS 367
            ++RL Y+ ++++ A AI   LA  L+L +S +S+S       L LGNA+LEF+ LP W+  AR S +LKRPQV+RL  I+VFT ++        T A  S  + +ARAWL EDRP++TPT +   S  S    +  +P VRE+VLGAG    E+  ++TDE+ A PCPG PH+Y LH       + +KAP                              + I +RLLHSPMSA+VLQV +GGL   KEDL  RGV FEEIG TGA EGQ+LLSS  L GLDVR+CD +A LSP+FNEGDEVL EHV+EELNP +S  LA+V E  +QA+SPA  YR+MG   GDCWSEFRSQ+KRPGGFF +SS
Sbjct:    9 IMRLHYVTASDSHARAIVSVLASVLQLPSSSSSAS-------LHLGNAVLEFSALPAWVNYARQSRVLKRPQVSRLRAIEVFTGTSCGEGSKGSTAAQSSFPHQNARAWLTEDRPLITPTFQK-SSFCSAPTNAVATPFVREVVLGAGLRWVEMTRLVTDELDAIPCPGFPHLYVLH----AELSDSKAP----------------------------PSSGIFVRLLHSPMSAVVLQVRAGGLNKLKEDLRRRGVTFEEIGSTGATEGQLLLSSHLLRGLDVRLCDADAVLSPYFNEGDEVLREHVIEELNPGLSLPLASV-EAGQQANSPAEEYRRMGARTGDCWSEFRSQIKRPGGFFTASS 332
The following BLAST results are available for this feature:
BLAST of NO07G02050 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27225.18.600e-8249.86hypothetical protein Naga_100010g100 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL103nonsL103Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL101nonsL101Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR071ncniR071Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR134ngnoR134Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR131ngnoR131Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR130ngnoR130Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK000632NSK000632Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO07G02050.1NO07G02050.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580681gene_2529Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100010g100gene3410Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO07G02050.1NO07G02050.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO07G02050 ID=NO07G02050|Name=NO07G02050|organism=Nannochloropsis oceanica|type=gene|length=1125bp
ATGACCACCACCACCACAGCACTTTTACGCCTCCGCTACATTGCTTCCAC
CAATACTCAAGCGAACGCAATTTGCGAAGAGCTTGCCTTGGCTCTCCGCC
TGTCTACATCTCAGGCCTCCTCCTCTAATGCATCGCCCCACTCTTGTCTG
CAATTGGGTAATGCATTGCTTGAATTTACGCCCTTGCCTCTTTGGATGAC
TTTGGCCAGACATTCAACCATGCTGAAGCGCCCACAAGTGGCGCGGCTGT
GTGGTATTGATGTTTTCACAAATTCCGCTATCATGACCCCTGCCCCCTTG
TCTTCTTCATACCACGACGCGCGGGCTTGGCTACTCGAGGACCGACCCAT
AGTCACCCCAACAGTGCGTACCGTTCCTTCGACCAGCAGCGTATCCTTGG
CTTCCACCATGAGTCCGCAAGTACGAGAAATCGTGCTAGGGGCGGGTGCG
AATTTGGCCGAGCTGGCCAGCATCATCACGGATGAAGTCGGTGCTCATCC
ATGCCCAGGCCTGCCACATGTCTATGCTTTACACGACGGAATGAAGGGCA
ATAGTGCAGGTAATAAAGCACCCTTAAATGCCAACAGCATCATTGACGCC
CCGGGCTTCCTCAAGCAGGCGCAATCACCGCAGCAGCAGCATTCCTCCCT
GTCACTCCAACGCAACAGCATCGCCTTACGCCTTCTACACTCGCCCATGT
CAGCATTGGTCCTTCAGGTAGAATCAGGTGGGCTGGCTGCAGCCAAGGAG
GATCTGTGGCATCGTGGAGTAAAGTTTGAGGAGATAGGAGGCACGGGTGC
GGCAGAGGGACAGATTTTGCTTTCCTCTCCGCATTTGCATGGCTTGGATG
TACGGATCTGTGATGGTGAGGCAGCTCTTTCTCCTTTTTTCAACGAGGGA
GATGAGGTCCTGTGCGAGCACGTACTTGAGGAGCTGAATCCTGCAATTTC
CAAATCGCTGGCCGCCGTGGGGGAAGGTTGGAAGCAAGCCTCATCACCCG
CCGCGGCGTACCGACAAATGGGAACGGGTATGGGGGACTGCTGGTCGGAG
TTCCGCTCTCAATTGAAGCGGCCTGGGGGGTTCTTCATGTCTTCCTCATC
ATCGTTTGGGTCCTCTTCAAAGTGA
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protein sequence of NO07G02050.1

>NO07G02050.1-protein ID=NO07G02050.1-protein|Name=NO07G02050.1|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MTTTTTALLRLRYIASTNTQANAICEELALALRLSTSQASSSNASPHSCL
QLGNALLEFTPLPLWMTLARHSTMLKRPQVARLCGIDVFTNSAIMTPAPL
SSSYHDARAWLLEDRPIVTPTVRTVPSTSSVSLASTMSPQVREIVLGAGA
NLAELASIITDEVGAHPCPGLPHVYALHDGMKGNSAGNKAPLNANSIIDA
PGFLKQAQSPQQQHSSLSLQRNSIALRLLHSPMSALVLQVESGGLAAAKE
DLWHRGVKFEEIGGTGAAEGQILLSSPHLHGLDVRICDGEAALSPFFNEG
DEVLCEHVLEELNPAISKSLAAVGEGWKQASSPAAAYRQMGTGMGDCWSE
FRSQLKRPGGFFMSSSSSFGSSSK*
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Synonyms
Publications